co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0090042: tubulin deacetylation	0.00E+00
4	GO:0006427: histidyl-tRNA aminoacylation	1.13E-05
5	GO:0034755: iron ion transmembrane transport	3.00E-05
6	GO:0009152: purine ribonucleotide biosynthetic process	8.23E-05
7	GO:0046653: tetrahydrofolate metabolic process	8.23E-05
8	GO:0048564: photosystem I assembly	3.08E-04
9	GO:0071482: cellular response to light stimulus	3.52E-04
10	GO:0006098: pentose-phosphate shunt	3.97E-04
11	GO:0006779: porphyrin-containing compound biosynthetic process	4.44E-04
12	GO:0006782: protoporphyrinogen IX biosynthetic process	4.91E-04
13	GO:0006879: cellular iron ion homeostasis	5.39E-04
14	GO:0006094: gluconeogenesis	6.40E-04
15	GO:0016575: histone deacetylation	9.08E-04
16	GO:0042335: cuticle development	1.26E-03
17	GO:0001666: response to hypoxia	1.95E-03
18	GO:0010027: thylakoid membrane organization	1.95E-03
19	GO:0015995: chlorophyll biosynthetic process	2.17E-03
20	GO:0009853: photorespiration	2.72E-03
21	GO:0006855: drug transmembrane transport	3.59E-03
22	GO:0006857: oligopeptide transport	4.15E-03
23	GO:0006096: glycolytic process	4.43E-03
24	GO:0009058: biosynthetic process	6.09E-03
25	GO:0042254: ribosome biogenesis	1.01E-02
26	GO:0006869: lipid transport	1.40E-02
27	GO:0032259: methylation	1.48E-02

Rank	GO Term	Adjusted P value
1	GO:0043014: alpha-tubulin binding	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0051721: protein phosphatase 2A binding	0.00E+00
4	GO:0042903: tubulin deacetylase activity	0.00E+00
5	GO:0004821: histidine-tRNA ligase activity	1.13E-05
6	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.13E-05
7	GO:0015194: L-serine transmembrane transporter activity	1.13E-05
8	GO:0005528: FK506 binding	1.39E-05
9	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.40E-05
10	GO:0008864: formyltetrahydrofolate deformylase activity	5.40E-05
11	GO:0048487: beta-tubulin binding	8.23E-05
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.77E-04
13	GO:0004332: fructose-bisphosphate aldolase activity	1.86E-04
14	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.52E-04
15	GO:0005381: iron ion transmembrane transporter activity	4.44E-04
16	GO:0005215: transporter activity	6.54E-04
17	GO:0004407: histone deacetylase activity	8.54E-04
18	GO:0004721: phosphoprotein phosphatase activity	2.17E-03
19	GO:0015238: drug transmembrane transporter activity	2.40E-03
20	GO:0043621: protein self-association	3.41E-03
21	GO:0019843: rRNA binding	5.87E-03
22	GO:0015297: antiporter activity	7.11E-03
23	GO:0008168: methyltransferase activity	9.69E-03
24	GO:0016788: hydrolase activity, acting on ester bonds	1.01E-02
25	GO:0008289: lipid binding	1.93E-02
26	GO:0005509: calcium ion binding	3.58E-02
27	GO:0003824: catalytic activity	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0031977: thylakoid lumen	2.00E-08
2	GO:0009543: chloroplast thylakoid lumen	1.80E-07
3	GO:0009507: chloroplast	1.50E-05
4	GO:0009579: thylakoid	2.94E-04
5	GO:0016020: membrane	4.86E-04
6	GO:0030095: chloroplast photosystem II	6.92E-04
7	GO:0009654: photosystem II oxygen evolving complex	9.08E-04
8	GO:0019898: extrinsic component of membrane	1.46E-03
9	GO:0009941: chloroplast envelope	3.97E-03
10	GO:0009570: chloroplast stroma	6.06E-03
11	GO:0009705: plant-type vacuole membrane	7.34E-03
12	GO:0046658: anchored component of plasma membrane	8.92E-03
13	GO:0009535: chloroplast thylakoid membrane	1.07E-02
14	GO:0031969: chloroplast membrane	1.16E-02
15	GO:0031225: anchored component of membrane	3.15E-02
16	GO:0005840: ribosome	3.93E-02
17	GO:0005886: plasma membrane	4.82E-02