co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0006105: succinate metabolic process	0.00E+00
3	GO:0000390: spliceosomal complex disassembly	0.00E+00
4	GO:0032497: detection of lipopolysaccharide	0.00E+00
5	GO:0019484: beta-alanine catabolic process	0.00E+00
6	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
7	GO:0042344: indole glucosinolate catabolic process	6.94E-06
8	GO:0052544: defense response by callose deposition in cell wall	1.37E-05
9	GO:0042732: D-xylose metabolic process	6.98E-05
10	GO:0048544: recognition of pollen	1.45E-04
11	GO:0006491: N-glycan processing	1.64E-04
12	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	2.00E-04
13	GO:0046167: glycerol-3-phosphate biosynthetic process	2.00E-04
14	GO:0035266: meristem growth	2.00E-04
15	GO:0009450: gamma-aminobutyric acid catabolic process	2.00E-04
16	GO:0007292: female gamete generation	2.00E-04
17	GO:0015760: glucose-6-phosphate transport	2.00E-04
18	GO:1990641: response to iron ion starvation	2.00E-04
19	GO:0010184: cytokinin transport	2.00E-04
20	GO:0071366: cellular response to indolebutyric acid stimulus	2.00E-04
21	GO:0009865: pollen tube adhesion	2.00E-04
22	GO:0046520: sphingoid biosynthetic process	2.00E-04
23	GO:0006540: glutamate decarboxylation to succinate	2.00E-04
24	GO:0045948: positive regulation of translational initiation	4.48E-04
25	GO:0009308: amine metabolic process	4.48E-04
26	GO:0010033: response to organic substance	4.48E-04
27	GO:0006641: triglyceride metabolic process	4.48E-04
28	GO:0009727: detection of ethylene stimulus	4.48E-04
29	GO:0006101: citrate metabolic process	4.48E-04
30	GO:0051788: response to misfolded protein	4.48E-04
31	GO:0006811: ion transport	4.74E-04
32	GO:0045087: innate immune response	5.66E-04
33	GO:0002237: response to molecule of bacterial origin	5.92E-04
34	GO:0035436: triose phosphate transmembrane transport	7.29E-04
35	GO:0030029: actin filament-based process	7.29E-04
36	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.29E-04
37	GO:0060968: regulation of gene silencing	7.29E-04
38	GO:0015714: phosphoenolpyruvate transport	7.29E-04
39	GO:0006954: inflammatory response	7.29E-04
40	GO:0019563: glycerol catabolic process	7.29E-04
41	GO:1900140: regulation of seedling development	7.29E-04
42	GO:0006882: cellular zinc ion homeostasis	1.04E-03
43	GO:0006624: vacuolar protein processing	1.04E-03
44	GO:0048194: Golgi vesicle budding	1.04E-03
45	GO:0006020: inositol metabolic process	1.04E-03
46	GO:2001289: lipid X metabolic process	1.04E-03
47	GO:0070301: cellular response to hydrogen peroxide	1.04E-03
48	GO:0072334: UDP-galactose transmembrane transport	1.04E-03
49	GO:0006072: glycerol-3-phosphate metabolic process	1.04E-03
50	GO:0015749: monosaccharide transport	1.04E-03
51	GO:0006809: nitric oxide biosynthetic process	1.04E-03
52	GO:0009399: nitrogen fixation	1.04E-03
53	GO:0009963: positive regulation of flavonoid biosynthetic process	1.04E-03
54	GO:0006878: cellular copper ion homeostasis	1.38E-03
55	GO:0006542: glutamine biosynthetic process	1.38E-03
56	GO:0015743: malate transport	1.38E-03
57	GO:0033320: UDP-D-xylose biosynthetic process	1.38E-03
58	GO:0006536: glutamate metabolic process	1.38E-03
59	GO:0015713: phosphoglycerate transport	1.38E-03
60	GO:0010188: response to microbial phytotoxin	1.38E-03
61	GO:0048367: shoot system development	1.44E-03
62	GO:0043097: pyrimidine nucleoside salvage	1.76E-03
63	GO:0006014: D-ribose metabolic process	2.17E-03
64	GO:0050665: hydrogen peroxide biosynthetic process	2.17E-03
65	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.17E-03
66	GO:0015691: cadmium ion transport	2.17E-03
67	GO:0048827: phyllome development	2.17E-03
68	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.17E-03
69	GO:0048232: male gamete generation	2.17E-03
70	GO:0043248: proteasome assembly	2.17E-03
71	GO:0006206: pyrimidine nucleobase metabolic process	2.17E-03
72	GO:0031930: mitochondria-nucleus signaling pathway	2.60E-03
73	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.60E-03
74	GO:0034389: lipid particle organization	2.60E-03
75	GO:0006694: steroid biosynthetic process	2.60E-03
76	GO:0048280: vesicle fusion with Golgi apparatus	2.60E-03
77	GO:0098869: cellular oxidant detoxification	3.06E-03
78	GO:0009395: phospholipid catabolic process	3.06E-03
79	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.06E-03
80	GO:0006333: chromatin assembly or disassembly	3.06E-03
81	GO:0048364: root development	3.09E-03
82	GO:0048573: photoperiodism, flowering	3.29E-03
83	GO:0006950: response to stress	3.29E-03
84	GO:0006102: isocitrate metabolic process	3.55E-03
85	GO:0006644: phospholipid metabolic process	3.55E-03
86	GO:0009690: cytokinin metabolic process	3.55E-03
87	GO:0006605: protein targeting	3.55E-03
88	GO:0009415: response to water	3.55E-03
89	GO:0010078: maintenance of root meristem identity	3.55E-03
90	GO:0009817: defense response to fungus, incompatible interaction	3.65E-03
91	GO:0006367: transcription initiation from RNA polymerase II promoter	4.06E-03
92	GO:0010119: regulation of stomatal movement	4.21E-03
93	GO:0006098: pentose-phosphate shunt	4.60E-03
94	GO:0046916: cellular transition metal ion homeostasis	4.60E-03
95	GO:0016051: carbohydrate biosynthetic process	4.61E-03
96	GO:0006099: tricarboxylic acid cycle	4.82E-03
97	GO:0055114: oxidation-reduction process	5.11E-03
98	GO:0008202: steroid metabolic process	5.15E-03
99	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.15E-03
100	GO:0042542: response to hydrogen peroxide	5.71E-03
101	GO:0009688: abscisic acid biosynthetic process	5.74E-03
102	GO:0048829: root cap development	5.74E-03
103	GO:0009970: cellular response to sulfate starvation	5.74E-03
104	GO:0006896: Golgi to vacuole transport	5.74E-03
105	GO:0006995: cellular response to nitrogen starvation	5.74E-03
106	GO:0042742: defense response to bacterium	5.80E-03
107	GO:0006979: response to oxidative stress	5.88E-03
108	GO:0009651: response to salt stress	6.09E-03
109	GO:0010015: root morphogenesis	6.34E-03
110	GO:0009682: induced systemic resistance	6.34E-03
111	GO:0043085: positive regulation of catalytic activity	6.34E-03
112	GO:0010152: pollen maturation	6.96E-03
113	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.96E-03
114	GO:0009737: response to abscisic acid	7.11E-03
115	GO:0000165: MAPK cascade	7.20E-03
116	GO:0035556: intracellular signal transduction	7.51E-03
117	GO:0010102: lateral root morphogenesis	7.61E-03
118	GO:0080167: response to karrikin	8.02E-03
119	GO:0006541: glutamine metabolic process	8.28E-03
120	GO:0009933: meristem structural organization	8.28E-03
121	GO:0090351: seedling development	8.97E-03
122	GO:0007033: vacuole organization	8.97E-03
123	GO:0009225: nucleotide-sugar metabolic process	8.97E-03
124	GO:0005985: sucrose metabolic process	8.97E-03
125	GO:0006863: purine nucleobase transport	9.68E-03
126	GO:0009409: response to cold	9.82E-03
127	GO:0045333: cellular respiration	1.04E-02
128	GO:0006487: protein N-linked glycosylation	1.04E-02
129	GO:0006825: copper ion transport	1.12E-02
130	GO:0009269: response to desiccation	1.19E-02
131	GO:0046686: response to cadmium ion	1.25E-02
132	GO:0031348: negative regulation of defense response	1.27E-02
133	GO:0030433: ubiquitin-dependent ERAD pathway	1.27E-02
134	GO:0001944: vasculature development	1.35E-02
135	GO:0009625: response to insect	1.35E-02
136	GO:0071215: cellular response to abscisic acid stimulus	1.35E-02
137	GO:0042147: retrograde transport, endosome to Golgi	1.52E-02
138	GO:0010051: xylem and phloem pattern formation	1.60E-02
139	GO:0015991: ATP hydrolysis coupled proton transport	1.60E-02
140	GO:0042631: cellular response to water deprivation	1.60E-02
141	GO:0080022: primary root development	1.60E-02
142	GO:0042391: regulation of membrane potential	1.60E-02
143	GO:0009790: embryo development	1.67E-02
144	GO:0010182: sugar mediated signaling pathway	1.69E-02
145	GO:0046323: glucose import	1.69E-02
146	GO:0010154: fruit development	1.69E-02
147	GO:0042752: regulation of circadian rhythm	1.78E-02
148	GO:0019252: starch biosynthetic process	1.87E-02
149	GO:0008654: phospholipid biosynthetic process	1.87E-02
150	GO:0009851: auxin biosynthetic process	1.87E-02
151	GO:0006623: protein targeting to vacuole	1.87E-02
152	GO:0010183: pollen tube guidance	1.87E-02
153	GO:0006635: fatty acid beta-oxidation	1.97E-02
154	GO:0071554: cell wall organization or biogenesis	1.97E-02
155	GO:0006891: intra-Golgi vesicle-mediated transport	1.97E-02
156	GO:0009630: gravitropism	2.06E-02
157	GO:0071281: cellular response to iron ion	2.16E-02
158	GO:0006914: autophagy	2.25E-02
159	GO:0019760: glucosinolate metabolic process	2.25E-02
160	GO:0010252: auxin homeostasis	2.25E-02
161	GO:0010286: heat acclimation	2.35E-02
162	GO:0010468: regulation of gene expression	2.37E-02
163	GO:0009617: response to bacterium	2.37E-02
164	GO:0016126: sterol biosynthetic process	2.55E-02
165	GO:0016310: phosphorylation	2.71E-02
166	GO:0009627: systemic acquired resistance	2.76E-02
167	GO:0042128: nitrate assimilation	2.76E-02
168	GO:0006888: ER to Golgi vesicle-mediated transport	2.87E-02
169	GO:0016049: cell growth	2.98E-02
170	GO:0010311: lateral root formation	3.20E-02
171	GO:0006970: response to osmotic stress	3.30E-02
172	GO:0006499: N-terminal protein myristoylation	3.31E-02
173	GO:0009631: cold acclimation	3.42E-02
174	GO:0006468: protein phosphorylation	3.49E-02
175	GO:0006865: amino acid transport	3.54E-02
176	GO:0009723: response to ethylene	3.55E-02
177	GO:0006508: proteolysis	3.93E-02
178	GO:0030001: metal ion transport	4.01E-02
179	GO:0046777: protein autophosphorylation	4.06E-02
180	GO:0006897: endocytosis	4.13E-02
181	GO:0009640: photomorphogenesis	4.37E-02
182	GO:0051707: response to other organism	4.37E-02
183	GO:0006886: intracellular protein transport	4.68E-02
184	GO:0009965: leaf morphogenesis	4.75E-02
185	GO:0006855: drug transmembrane transport	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
2	GO:1990446: U1 snRNP binding	0.00E+00
3	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
4	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
5	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
6	GO:0019211: phosphatase activator activity	0.00E+00
7	GO:0009045: xylose isomerase activity	0.00E+00
8	GO:0010293: abscisic aldehyde oxidase activity	0.00E+00
9	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
10	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
11	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
12	GO:0004370: glycerol kinase activity	0.00E+00
13	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.16E-05
14	GO:0005524: ATP binding	8.40E-05
15	GO:0004012: phospholipid-translocating ATPase activity	9.69E-05
16	GO:0009679: hexose:proton symporter activity	2.00E-04
17	GO:0035671: enone reductase activity	2.00E-04
18	GO:0000170: sphingosine hydroxylase activity	2.00E-04
19	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	2.00E-04
20	GO:0046870: cadmium ion binding	2.00E-04
21	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	2.00E-04
22	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.00E-04
23	GO:0050200: plasmalogen synthase activity	2.00E-04
24	GO:0052595: aliphatic-amine oxidase activity	2.00E-04
25	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.00E-04
26	GO:0003867: 4-aminobutyrate transaminase activity	2.00E-04
27	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.00E-04
28	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	2.00E-04
29	GO:0032791: lead ion binding	4.48E-04
30	GO:0003994: aconitate hydratase activity	4.48E-04
31	GO:0015152: glucose-6-phosphate transmembrane transporter activity	4.48E-04
32	GO:0038199: ethylene receptor activity	4.48E-04
33	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	4.48E-04
34	GO:0042284: sphingolipid delta-4 desaturase activity	4.48E-04
35	GO:0019200: carbohydrate kinase activity	4.48E-04
36	GO:0016301: kinase activity	6.61E-04
37	GO:0004383: guanylate cyclase activity	7.29E-04
38	GO:0004096: catalase activity	7.29E-04
39	GO:0071917: triose-phosphate transmembrane transporter activity	7.29E-04
40	GO:0005047: signal recognition particle binding	7.29E-04
41	GO:0019829: cation-transporting ATPase activity	7.29E-04
42	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	7.29E-04
43	GO:0005507: copper ion binding	8.03E-04
44	GO:0004707: MAP kinase activity	9.79E-04
45	GO:0051740: ethylene binding	1.04E-03
46	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	1.04E-03
47	GO:0001653: peptide receptor activity	1.04E-03
48	GO:0048027: mRNA 5'-UTR binding	1.04E-03
49	GO:0015086: cadmium ion transmembrane transporter activity	1.04E-03
50	GO:0004108: citrate (Si)-synthase activity	1.04E-03
51	GO:0030527: structural constituent of chromatin	1.04E-03
52	GO:0009916: alternative oxidase activity	1.38E-03
53	GO:0015120: phosphoglycerate transmembrane transporter activity	1.38E-03
54	GO:0004031: aldehyde oxidase activity	1.38E-03
55	GO:0050302: indole-3-acetaldehyde oxidase activity	1.38E-03
56	GO:0005253: anion channel activity	1.38E-03
57	GO:0004576: oligosaccharyl transferase activity	1.38E-03
58	GO:0004356: glutamate-ammonia ligase activity	1.76E-03
59	GO:0005459: UDP-galactose transmembrane transporter activity	1.76E-03
60	GO:0015145: monosaccharide transmembrane transporter activity	1.76E-03
61	GO:0048040: UDP-glucuronate decarboxylase activity	2.17E-03
62	GO:0019137: thioglucosidase activity	2.17E-03
63	GO:0000293: ferric-chelate reductase activity	2.17E-03
64	GO:0031369: translation initiation factor binding	2.17E-03
65	GO:0036402: proteasome-activating ATPase activity	2.17E-03
66	GO:0004559: alpha-mannosidase activity	2.60E-03
67	GO:0070403: NAD+ binding	2.60E-03
68	GO:0004849: uridine kinase activity	2.60E-03
69	GO:0070300: phosphatidic acid binding	2.60E-03
70	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.60E-03
71	GO:0004747: ribokinase activity	2.60E-03
72	GO:0004602: glutathione peroxidase activity	2.60E-03
73	GO:0015140: malate transmembrane transporter activity	3.06E-03
74	GO:0004672: protein kinase activity	3.43E-03
75	GO:0008865: fructokinase activity	3.55E-03
76	GO:0004525: ribonuclease III activity	3.55E-03
77	GO:0005375: copper ion transmembrane transporter activity	4.06E-03
78	GO:0050897: cobalt ion binding	4.21E-03
79	GO:0003993: acid phosphatase activity	4.82E-03
80	GO:0047617: acyl-CoA hydrolase activity	5.15E-03
81	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.15E-03
82	GO:0015020: glucuronosyltransferase activity	5.74E-03
83	GO:0004673: protein histidine kinase activity	5.74E-03
84	GO:0005315: inorganic phosphate transmembrane transporter activity	7.61E-03
85	GO:0000155: phosphorelay sensor kinase activity	7.61E-03
86	GO:0008081: phosphoric diester hydrolase activity	7.61E-03
87	GO:0008131: primary amine oxidase activity	8.28E-03
88	GO:0031625: ubiquitin protein ligase binding	8.87E-03
89	GO:0030552: cAMP binding	8.97E-03
90	GO:0030553: cGMP binding	8.97E-03
91	GO:0017025: TBP-class protein binding	8.97E-03
92	GO:0043424: protein histidine kinase binding	1.12E-02
93	GO:0005345: purine nucleobase transmembrane transporter activity	1.12E-02
94	GO:0005216: ion channel activity	1.12E-02
95	GO:0005516: calmodulin binding	1.28E-02
96	GO:0003727: single-stranded RNA binding	1.43E-02
97	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.47E-02
98	GO:0005249: voltage-gated potassium channel activity	1.60E-02
99	GO:0030551: cyclic nucleotide binding	1.60E-02
100	GO:0004872: receptor activity	1.87E-02
101	GO:0005506: iron ion binding	1.96E-02
102	GO:0048038: quinone binding	1.97E-02
103	GO:0004197: cysteine-type endopeptidase activity	2.06E-02
104	GO:0000156: phosphorelay response regulator activity	2.16E-02
105	GO:0005200: structural constituent of cytoskeleton	2.35E-02
106	GO:0016413: O-acetyltransferase activity	2.45E-02
107	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.52E-02
108	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.76E-02
109	GO:0008375: acetylglucosaminyltransferase activity	2.76E-02
110	GO:0004683: calmodulin-dependent protein kinase activity	2.87E-02
111	GO:0102483: scopolin beta-glucosidase activity	2.87E-02
112	GO:0030247: polysaccharide binding	2.87E-02
113	GO:0000287: magnesium ion binding	3.01E-02
114	GO:0046982: protein heterodimerization activity	3.01E-02
115	GO:0016788: hydrolase activity, acting on ester bonds	3.13E-02
116	GO:0005096: GTPase activator activity	3.20E-02
117	GO:0004222: metalloendopeptidase activity	3.31E-02
118	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.42E-02
119	GO:0004674: protein serine/threonine kinase activity	3.50E-02
120	GO:0050660: flavin adenine dinucleotide binding	3.55E-02
121	GO:0003697: single-stranded DNA binding	3.65E-02
122	GO:0004497: monooxygenase activity	3.80E-02
123	GO:0000149: SNARE binding	3.89E-02
124	GO:0008422: beta-glucosidase activity	3.89E-02
125	GO:0030246: carbohydrate binding	3.92E-02
126	GO:0051539: 4 iron, 4 sulfur cluster binding	4.01E-02
127	GO:0005484: SNAP receptor activity	4.37E-02
128	GO:0051537: 2 iron, 2 sulfur cluster binding	4.62E-02
129	GO:0035091: phosphatidylinositol binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0031981: nuclear lumen	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0016021: integral component of membrane	4.10E-09
5	GO:0005886: plasma membrane	4.82E-07
6	GO:0005783: endoplasmic reticulum	1.59E-05
7	GO:0005789: endoplasmic reticulum membrane	6.99E-05
8	GO:0005777: peroxisome	5.22E-04
9	GO:0005802: trans-Golgi network	1.01E-03
10	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.38E-03
11	GO:0005776: autophagosome	1.38E-03
12	GO:0005794: Golgi apparatus	1.94E-03
13	GO:0030140: trans-Golgi network transport vesicle	2.17E-03
14	GO:0005774: vacuolar membrane	2.25E-03
15	GO:0031597: cytosolic proteasome complex	2.60E-03
16	GO:0030173: integral component of Golgi membrane	2.60E-03
17	GO:0016363: nuclear matrix	2.60E-03
18	GO:0031595: nuclear proteasome complex	3.06E-03
19	GO:0012507: ER to Golgi transport vesicle membrane	3.55E-03
20	GO:0030131: clathrin adaptor complex	3.55E-03
21	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.06E-03
22	GO:0000786: nucleosome	4.41E-03
23	GO:0008540: proteasome regulatory particle, base subcomplex	5.15E-03
24	GO:0031902: late endosome membrane	5.48E-03
25	GO:0030125: clathrin vesicle coat	5.74E-03
26	GO:0005773: vacuole	6.17E-03
27	GO:0005665: DNA-directed RNA polymerase II, core complex	6.96E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	8.97E-03
29	GO:0070469: respiratory chain	1.12E-02
30	GO:0005905: clathrin-coated pit	1.19E-02
31	GO:0031410: cytoplasmic vesicle	1.27E-02
32	GO:0005770: late endosome	1.69E-02
33	GO:0005768: endosome	1.71E-02
34	GO:0031965: nuclear membrane	1.87E-02
35	GO:0000785: chromatin	2.06E-02
36	GO:0005829: cytosol	2.21E-02
37	GO:0000932: P-body	2.55E-02
38	GO:0016020: membrane	3.00E-02
39	GO:0000325: plant-type vacuole	3.42E-02
40	GO:0031201: SNARE complex	4.13E-02
41	GO:0009506: plasmodesma	4.78E-02