GO Enrichment Analysis of Co-expressed Genes with
AT3G56090
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901671: positive regulation of superoxide dismutase activity | 0.00E+00 |
| 2 | GO:0016048: detection of temperature stimulus | 0.00E+00 |
| 3 | GO:0006216: cytidine catabolic process | 0.00E+00 |
| 4 | GO:0009946: proximal/distal axis specification | 0.00E+00 |
| 5 | GO:0051290: protein heterotetramerization | 0.00E+00 |
| 6 | GO:0042026: protein refolding | 4.99E-09 |
| 7 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.21E-07 |
| 8 | GO:0007005: mitochondrion organization | 4.57E-07 |
| 9 | GO:0006458: 'de novo' protein folding | 2.49E-06 |
| 10 | GO:0009658: chloroplast organization | 5.35E-06 |
| 11 | GO:0006438: valyl-tRNA aminoacylation | 2.08E-05 |
| 12 | GO:0010020: chloroplast fission | 2.34E-05 |
| 13 | GO:0061077: chaperone-mediated protein folding | 4.40E-05 |
| 14 | GO:0009790: embryo development | 5.36E-05 |
| 15 | GO:0080183: response to photooxidative stress | 5.37E-05 |
| 16 | GO:0006342: chromatin silencing | 7.84E-05 |
| 17 | GO:0010338: leaf formation | 9.50E-05 |
| 18 | GO:0043572: plastid fission | 1.42E-04 |
| 19 | GO:0006986: response to unfolded protein | 1.42E-04 |
| 20 | GO:0045088: regulation of innate immune response | 1.95E-04 |
| 21 | GO:0009902: chloroplast relocation | 1.95E-04 |
| 22 | GO:0010236: plastoquinone biosynthetic process | 2.51E-04 |
| 23 | GO:0009972: cytidine deamination | 3.11E-04 |
| 24 | GO:0009094: L-phenylalanine biosynthetic process | 3.73E-04 |
| 25 | GO:0048564: photosystem I assembly | 5.05E-04 |
| 26 | GO:0000105: histidine biosynthetic process | 5.05E-04 |
| 27 | GO:0048193: Golgi vesicle transport | 5.74E-04 |
| 28 | GO:0044030: regulation of DNA methylation | 5.74E-04 |
| 29 | GO:0008356: asymmetric cell division | 7.18E-04 |
| 30 | GO:0045036: protein targeting to chloroplast | 7.94E-04 |
| 31 | GO:0006457: protein folding | 8.57E-04 |
| 32 | GO:0019684: photosynthesis, light reaction | 8.71E-04 |
| 33 | GO:0006633: fatty acid biosynthetic process | 9.50E-04 |
| 34 | GO:0045037: protein import into chloroplast stroma | 9.50E-04 |
| 35 | GO:0009767: photosynthetic electron transport chain | 1.03E-03 |
| 36 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.38E-03 |
| 37 | GO:0006418: tRNA aminoacylation for protein translation | 1.47E-03 |
| 38 | GO:0007017: microtubule-based process | 1.47E-03 |
| 39 | GO:0009411: response to UV | 1.76E-03 |
| 40 | GO:0045892: negative regulation of transcription, DNA-templated | 2.35E-03 |
| 41 | GO:0046686: response to cadmium ion | 2.59E-03 |
| 42 | GO:0010286: heat acclimation | 2.96E-03 |
| 43 | GO:0009615: response to virus | 3.21E-03 |
| 44 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 3.33E-03 |
| 45 | GO:0009627: systemic acquired resistance | 3.45E-03 |
| 46 | GO:0016311: dephosphorylation | 3.71E-03 |
| 47 | GO:0008219: cell death | 3.84E-03 |
| 48 | GO:0009637: response to blue light | 4.51E-03 |
| 49 | GO:0009908: flower development | 4.54E-03 |
| 50 | GO:0009965: leaf morphogenesis | 5.81E-03 |
| 51 | GO:0042538: hyperosmotic salinity response | 6.27E-03 |
| 52 | GO:0042742: defense response to bacterium | 1.01E-02 |
| 53 | GO:0007623: circadian rhythm | 1.24E-02 |
| 54 | GO:0009739: response to gibberellin | 1.34E-02 |
| 55 | GO:0006470: protein dephosphorylation | 1.36E-02 |
| 56 | GO:0009409: response to cold | 1.38E-02 |
| 57 | GO:0010468: regulation of gene expression | 1.40E-02 |
| 58 | GO:0006970: response to osmotic stress | 1.77E-02 |
| 59 | GO:0007049: cell cycle | 1.82E-02 |
| 60 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.01E-02 |
| 61 | GO:0009793: embryo development ending in seed dormancy | 2.36E-02 |
| 62 | GO:0009751: response to salicylic acid | 2.56E-02 |
| 63 | GO:0009408: response to heat | 2.59E-02 |
| 64 | GO:0009753: response to jasmonic acid | 2.72E-02 |
| 65 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 3.16E-02 |
| 66 | GO:0009735: response to cytokinin | 3.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004635: phosphoribosyl-AMP cyclohydrolase activity | 0.00E+00 |
| 2 | GO:0047844: deoxycytidine deaminase activity | 0.00E+00 |
| 3 | GO:0004636: phosphoribosyl-ATP diphosphatase activity | 0.00E+00 |
| 4 | GO:0051082: unfolded protein binding | 8.38E-09 |
| 5 | GO:0044183: protein binding involved in protein folding | 6.90E-08 |
| 6 | GO:0004832: valine-tRNA ligase activity | 2.08E-05 |
| 7 | GO:0004312: fatty acid synthase activity | 5.37E-05 |
| 8 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 9.50E-05 |
| 9 | GO:0005515: protein binding | 1.62E-04 |
| 10 | GO:0004664: prephenate dehydratase activity | 1.95E-04 |
| 11 | GO:0047769: arogenate dehydratase activity | 1.95E-04 |
| 12 | GO:0004784: superoxide dismutase activity | 3.11E-04 |
| 13 | GO:0005198: structural molecule activity | 3.67E-04 |
| 14 | GO:0004126: cytidine deaminase activity | 3.73E-04 |
| 15 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.73E-04 |
| 16 | GO:0051087: chaperone binding | 1.47E-03 |
| 17 | GO:0046982: protein heterodimerization activity | 1.55E-03 |
| 18 | GO:0004812: aminoacyl-tRNA ligase activity | 1.96E-03 |
| 19 | GO:0042803: protein homodimerization activity | 2.43E-03 |
| 20 | GO:0004722: protein serine/threonine phosphatase activity | 2.54E-03 |
| 21 | GO:0005524: ATP binding | 2.62E-03 |
| 22 | GO:0016597: amino acid binding | 3.08E-03 |
| 23 | GO:0003993: acid phosphatase activity | 4.65E-03 |
| 24 | GO:0043621: protein self-association | 5.66E-03 |
| 25 | GO:0005507: copper ion binding | 7.13E-03 |
| 26 | GO:0005516: calmodulin binding | 7.53E-03 |
| 27 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 7.57E-03 |
| 28 | GO:0003779: actin binding | 8.25E-03 |
| 29 | GO:0008565: protein transporter activity | 1.12E-02 |
| 30 | GO:0042802: identical protein binding | 1.46E-02 |
| 31 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 2.23E-02 |
| 32 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 2.41E-02 |
| 33 | GO:0003924: GTPase activity | 2.59E-02 |
| 34 | GO:0016740: transferase activity | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009570: chloroplast stroma | 1.08E-11 |
| 2 | GO:0009507: chloroplast | 5.70E-08 |
| 3 | GO:0009579: thylakoid | 4.41E-06 |
| 4 | GO:0009941: chloroplast envelope | 5.87E-06 |
| 5 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.08E-05 |
| 6 | GO:0000790: nuclear chromatin | 6.58E-05 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 9.87E-05 |
| 8 | GO:0000786: nucleosome | 2.41E-04 |
| 9 | GO:0000793: condensed chromosome | 3.11E-04 |
| 10 | GO:0022626: cytosolic ribosome | 5.89E-04 |
| 11 | GO:0042644: chloroplast nucleoid | 6.45E-04 |
| 12 | GO:0005623: cell | 7.86E-04 |
| 13 | GO:0030095: chloroplast photosystem II | 1.11E-03 |
| 14 | GO:0048046: apoplast | 1.45E-03 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 1.47E-03 |
| 16 | GO:0009532: plastid stroma | 1.56E-03 |
| 17 | GO:0009536: plastid | 1.92E-03 |
| 18 | GO:0019898: extrinsic component of membrane | 2.39E-03 |
| 19 | GO:0005730: nucleolus | 2.88E-03 |
| 20 | GO:0010319: stromule | 2.96E-03 |
| 21 | GO:0009295: nucleoid | 2.96E-03 |
| 22 | GO:0005856: cytoskeleton | 5.81E-03 |
| 23 | GO:0009534: chloroplast thylakoid | 6.05E-03 |
| 24 | GO:0009706: chloroplast inner membrane | 8.42E-03 |
| 25 | GO:0005622: intracellular | 8.90E-03 |
| 26 | GO:0009543: chloroplast thylakoid lumen | 9.85E-03 |
| 27 | GO:0005759: mitochondrial matrix | 1.16E-02 |
| 28 | GO:0005874: microtubule | 1.91E-02 |