co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:0006412: translation	2.55E-44
4	GO:0042254: ribosome biogenesis	1.53E-20
5	GO:0000027: ribosomal large subunit assembly	5.83E-11
6	GO:0009955: adaxial/abaxial pattern specification	8.63E-06
7	GO:0000028: ribosomal small subunit assembly	1.59E-05
8	GO:1990542: mitochondrial transmembrane transport	4.45E-05
9	GO:0006900: membrane budding	4.45E-05
10	GO:0009967: positive regulation of signal transduction	1.10E-04
11	GO:0009220: pyrimidine ribonucleotide biosynthetic process	1.10E-04
12	GO:0002181: cytoplasmic translation	1.89E-04
13	GO:0010476: gibberellin mediated signaling pathway	1.89E-04
14	GO:0090506: axillary shoot meristem initiation	1.89E-04
15	GO:0009735: response to cytokinin	2.70E-04
16	GO:0044205: 'de novo' UMP biosynthetic process	3.73E-04
17	GO:2000032: regulation of secondary shoot formation	3.73E-04
18	GO:0071493: cellular response to UV-B	4.75E-04
19	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	8.11E-04
20	GO:0008283: cell proliferation	8.29E-04
21	GO:0009965: leaf morphogenesis	9.25E-04
22	GO:0000387: spliceosomal snRNP assembly	1.32E-03
23	GO:0006913: nucleocytoplasmic transport	1.61E-03
24	GO:0010015: root morphogenesis	1.61E-03
25	GO:0006820: anion transport	1.77E-03
26	GO:0010102: lateral root morphogenesis	1.92E-03
27	GO:0006626: protein targeting to mitochondrion	1.92E-03
28	GO:0030150: protein import into mitochondrial matrix	2.60E-03
29	GO:0007005: mitochondrion organization	3.14E-03
30	GO:0071215: cellular response to abscisic acid stimulus	3.33E-03
31	GO:0006414: translational elongation	3.43E-03
32	GO:0051028: mRNA transport	3.73E-03
33	GO:0006520: cellular amino acid metabolic process	4.14E-03
34	GO:0009749: response to glucose	4.56E-03
35	GO:0032502: developmental process	4.99E-03
36	GO:0010252: auxin homeostasis	5.45E-03
37	GO:0016049: cell growth	7.14E-03
38	GO:0006811: ion transport	7.91E-03
39	GO:0048527: lateral root development	8.18E-03
40	GO:0009853: photorespiration	8.71E-03
41	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.19E-02
42	GO:0006364: rRNA processing	1.28E-02
43	GO:0006417: regulation of translation	1.38E-02
44	GO:0000398: mRNA splicing, via spliceosome	1.83E-02
45	GO:0009845: seed germination	2.05E-02
46	GO:0016036: cellular response to phosphate starvation	2.31E-02
47	GO:0010228: vegetative to reproductive phase transition of meristem	2.51E-02
48	GO:0009739: response to gibberellin	2.63E-02
49	GO:0009860: pollen tube growth	3.50E-02
50	GO:0009723: response to ethylene	3.68E-02
51	GO:0016192: vesicle-mediated transport	4.01E-02
52	GO:0015979: photosynthesis	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0004070: aspartate carbamoyltransferase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	7.24E-58
3	GO:0003729: mRNA binding	1.10E-12
4	GO:0008097: 5S rRNA binding	1.17E-06
5	GO:0005078: MAP-kinase scaffold activity	1.10E-04
6	GO:0016743: carboxyl- or carbamoyltransferase activity	1.10E-04
7	GO:0019843: rRNA binding	1.75E-04
8	GO:0032947: protein complex scaffold	1.89E-04
9	GO:0070180: large ribosomal subunit rRNA binding	1.89E-04
10	GO:0017077: oxidative phosphorylation uncoupler activity	2.78E-04
11	GO:0015288: porin activity	9.32E-04
12	GO:0008308: voltage-gated anion channel activity	1.06E-03
13	GO:0015266: protein channel activity	1.92E-03
14	GO:0000166: nucleotide binding	2.07E-03
15	GO:0003723: RNA binding	5.80E-03
16	GO:0016597: amino acid binding	5.91E-03
17	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.39E-03
18	GO:0003746: translation elongation factor activity	8.71E-03
19	GO:0004871: signal transducer activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022626: cytosolic ribosome	2.57E-45
3	GO:0022625: cytosolic large ribosomal subunit	4.65E-41
4	GO:0005840: ribosome	1.38E-34
5	GO:0005730: nucleolus	1.37E-21
6	GO:0022627: cytosolic small ribosomal subunit	4.08E-17
7	GO:0005737: cytoplasm	5.70E-17
8	GO:0015934: large ribosomal subunit	7.19E-13
9	GO:0005829: cytosol	8.99E-13
10	GO:0005773: vacuole	1.58E-09
11	GO:0009506: plasmodesma	2.05E-09
12	GO:0016020: membrane	2.71E-08
13	GO:0005774: vacuolar membrane	5.24E-07
14	GO:0005618: cell wall	9.57E-06
15	GO:0015935: small ribosomal subunit	1.30E-04
16	GO:0034719: SMN-Sm protein complex	1.89E-04
17	GO:0005682: U5 snRNP	3.73E-04
18	GO:0005687: U4 snRNP	4.75E-04
19	GO:0097526: spliceosomal tri-snRNP complex	4.75E-04
20	GO:0005689: U12-type spliceosomal complex	6.94E-04
21	GO:0071004: U2-type prespliceosome	9.32E-04
22	GO:0005742: mitochondrial outer membrane translocase complex	1.06E-03
23	GO:0046930: pore complex	1.06E-03
24	GO:0005685: U1 snRNP	1.19E-03
25	GO:0071011: precatalytic spliceosome	1.32E-03
26	GO:0005834: heterotrimeric G-protein complex	1.37E-03
27	GO:0005686: U2 snRNP	1.47E-03
28	GO:0071013: catalytic step 2 spliceosome	1.61E-03
29	GO:0048471: perinuclear region of cytoplasm	1.61E-03
30	GO:0019013: viral nucleocapsid	1.92E-03
31	GO:0005741: mitochondrial outer membrane	2.96E-03
32	GO:0005743: mitochondrial inner membrane	6.86E-03
33	GO:0005643: nuclear pore	7.39E-03
34	GO:0009507: chloroplast	1.18E-02
35	GO:0005635: nuclear envelope	1.35E-02
36	GO:0005681: spliceosomal complex	1.45E-02
37	GO:0005747: mitochondrial respiratory chain complex I	1.48E-02
38	GO:0005732: small nucleolar ribonucleoprotein complex	1.75E-02
39	GO:0005886: plasma membrane	2.73E-02
40	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.55E-02