Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009734: auxin-activated signaling pathway1.21E-05
2GO:0009926: auxin polar transport3.71E-05
3GO:0010028: xanthophyll cycle3.90E-05
4GO:0009664: plant-type cell wall organization5.28E-05
5GO:0010541: acropetal auxin transport9.72E-05
6GO:0016122: xanthophyll metabolic process9.72E-05
7GO:0006898: receptor-mediated endocytosis9.72E-05
8GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.32E-04
9GO:0016045: detection of bacterium1.68E-04
10GO:0010359: regulation of anion channel activity1.68E-04
11GO:0080055: low-affinity nitrate transport1.68E-04
12GO:0010160: formation of animal organ boundary1.68E-04
13GO:0042335: cuticle development1.71E-04
14GO:0045490: pectin catabolic process2.16E-04
15GO:1901332: negative regulation of lateral root development2.48E-04
16GO:0051513: regulation of monopolar cell growth2.48E-04
17GO:0043481: anthocyanin accumulation in tissues in response to UV light2.48E-04
18GO:0009828: plant-type cell wall loosening2.82E-04
19GO:0015994: chlorophyll metabolic process3.33E-04
20GO:0010438: cellular response to sulfur starvation4.25E-04
21GO:0060918: auxin transport5.22E-04
22GO:0009759: indole glucosinolate biosynthetic process5.22E-04
23GO:0009942: longitudinal axis specification6.22E-04
24GO:0046620: regulation of organ growth8.37E-04
25GO:0009733: response to auxin8.44E-04
26GO:0007389: pattern specification process9.50E-04
27GO:0009932: cell tip growth9.50E-04
28GO:0010206: photosystem II repair1.07E-03
29GO:0009245: lipid A biosynthetic process1.07E-03
30GO:0009638: phototropism1.19E-03
31GO:0006949: syncytium formation1.31E-03
32GO:0046856: phosphatidylinositol dephosphorylation1.44E-03
33GO:0052544: defense response by callose deposition in cell wall1.44E-03
34GO:0008361: regulation of cell size1.58E-03
35GO:0002213: defense response to insect1.58E-03
36GO:0009785: blue light signaling pathway1.72E-03
37GO:0010540: basipetal auxin transport1.86E-03
38GO:0010053: root epidermal cell differentiation2.01E-03
39GO:0006833: water transport2.16E-03
40GO:0000162: tryptophan biosynthetic process2.16E-03
41GO:0055085: transmembrane transport2.26E-03
42GO:2000377: regulation of reactive oxygen species metabolic process2.32E-03
43GO:0007017: microtubule-based process2.48E-03
44GO:0048443: stamen development3.15E-03
45GO:0009826: unidimensional cell growth3.29E-03
46GO:0034220: ion transmembrane transport3.50E-03
47GO:0009958: positive gravitropism3.69E-03
48GO:0071472: cellular response to salt stress3.69E-03
49GO:0010305: leaf vascular tissue pattern formation3.69E-03
50GO:0000302: response to reactive oxygen species4.26E-03
51GO:0010583: response to cyclopentenone4.45E-03
52GO:0016032: viral process4.45E-03
53GO:0015979: photosynthesis4.82E-03
54GO:0009639: response to red or far red light4.85E-03
55GO:0010252: auxin homeostasis4.85E-03
56GO:0071805: potassium ion transmembrane transport5.05E-03
57GO:0045892: negative regulation of transcription, DNA-templated5.13E-03
58GO:0009627: systemic acquired resistance5.91E-03
59GO:0015995: chlorophyll biosynthetic process6.13E-03
60GO:0048364: root development6.50E-03
61GO:0010311: lateral root formation6.80E-03
62GO:0005975: carbohydrate metabolic process6.90E-03
63GO:0010218: response to far red light7.04E-03
64GO:0048527: lateral root development7.27E-03
65GO:0009637: response to blue light7.75E-03
66GO:0034599: cellular response to oxidative stress7.99E-03
67GO:0006631: fatty acid metabolic process8.74E-03
68GO:0010114: response to red light9.25E-03
69GO:0009640: photomorphogenesis9.25E-03
70GO:0007275: multicellular organism development9.59E-03
71GO:0006855: drug transmembrane transport1.03E-02
72GO:0009416: response to light stimulus1.11E-02
73GO:0006813: potassium ion transport1.14E-02
74GO:0006857: oligopeptide transport1.20E-02
75GO:0042545: cell wall modification1.43E-02
76GO:0009624: response to nematode1.46E-02
77GO:0042744: hydrogen peroxide catabolic process1.88E-02
78GO:0006633: fatty acid biosynthetic process2.02E-02
79GO:0040008: regulation of growth2.09E-02
80GO:0071555: cell wall organization2.25E-02
81GO:0009739: response to gibberellin2.34E-02
82GO:0007166: cell surface receptor signaling pathway2.37E-02
83GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.51E-02
84GO:0045454: cell redox homeostasis3.90E-02
85GO:0006869: lipid transport4.16E-02
86GO:0032259: methylation4.39E-02
87GO:0006629: lipid metabolic process4.53E-02
88GO:0009408: response to heat4.53E-02
89GO:0007165: signal transduction4.66E-02
90GO:0009753: response to jasmonic acid4.76E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0046422: violaxanthin de-epoxidase activity0.00E+00
3GO:0010329: auxin efflux transmembrane transporter activity5.16E-05
4GO:0005094: Rho GDP-dissociation inhibitor activity9.72E-05
5GO:0030570: pectate lyase activity1.32E-04
6GO:0016829: lyase activity1.54E-04
7GO:0080054: low-affinity nitrate transmembrane transporter activity1.68E-04
8GO:0005096: GTPase activator activity4.61E-04
9GO:0031177: phosphopantetheine binding5.22E-04
10GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity5.22E-04
11GO:0004130: cytochrome-c peroxidase activity5.22E-04
12GO:0042578: phosphoric ester hydrolase activity5.22E-04
13GO:0000035: acyl binding6.22E-04
14GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.37E-04
15GO:0009672: auxin:proton symporter activity1.19E-03
16GO:0004650: polygalacturonase activity1.20E-03
17GO:0047372: acylglycerol lipase activity1.44E-03
18GO:0008794: arsenate reductase (glutaredoxin) activity1.44E-03
19GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.58E-03
20GO:0031072: heat shock protein binding1.72E-03
21GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.08E-03
22GO:0015079: potassium ion transmembrane transporter activity2.48E-03
23GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.82E-03
24GO:0003756: protein disulfide isomerase activity3.15E-03
25GO:0005200: structural constituent of cytoskeleton5.05E-03
26GO:0015250: water channel activity5.47E-03
27GO:0005515: protein binding6.37E-03
28GO:0004712: protein serine/threonine/tyrosine kinase activity8.24E-03
29GO:0051537: 2 iron, 2 sulfur cluster binding9.77E-03
30GO:0003777: microtubule motor activity1.23E-02
31GO:0045330: aspartyl esterase activity1.23E-02
32GO:0030599: pectinesterase activity1.40E-02
33GO:0051082: unfolded protein binding1.46E-02
34GO:0015035: protein disulfide oxidoreductase activity1.49E-02
35GO:0016301: kinase activity1.62E-02
36GO:0046910: pectinesterase inhibitor activity2.05E-02
37GO:0005215: transporter activity2.49E-02
38GO:0004601: peroxidase activity2.94E-02
39GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.90E-02
40GO:0004871: signal transducer activity4.03E-02
41GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.21E-02
42GO:0003924: GTPase activity4.53E-02
43GO:0009055: electron carrier activity4.76E-02
44GO:0016787: hydrolase activity4.79E-02
RankGO TermAdjusted P value
1GO:0030095: chloroplast photosystem II5.95E-05
2GO:0009543: chloroplast thylakoid lumen1.38E-04
3GO:0009531: secondary cell wall2.48E-04
4GO:0009534: chloroplast thylakoid3.20E-04
5GO:0009535: chloroplast thylakoid membrane4.82E-04
6GO:0005886: plasma membrane5.60E-04
7GO:0031977: thylakoid lumen6.53E-04
8GO:0009505: plant-type cell wall9.94E-04
9GO:0045298: tubulin complex1.07E-03
10GO:0005618: cell wall1.30E-03
11GO:0016020: membrane2.41E-03
12GO:0009522: photosystem I3.87E-03
13GO:0009523: photosystem II4.06E-03
14GO:0009507: chloroplast6.30E-03
15GO:0009570: chloroplast stroma1.21E-02
16GO:0010008: endosome membrane1.31E-02
17GO:0005576: extracellular region1.35E-02
18GO:0010287: plastoglobule1.65E-02
19GO:0005768: endosome2.02E-02
20GO:0009941: chloroplast envelope2.88E-02
21GO:0005874: microtubule3.35E-02
22GO:0031969: chloroplast membrane3.43E-02
Gene type



Gene DE type