co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904281: positive regulation of transcription from RNA polymerase V promoter	0.00E+00
2	GO:0046473: phosphatidic acid metabolic process	0.00E+00
3	GO:1990280: RNA localization to chromatin	0.00E+00
4	GO:0012502: induction of programmed cell death	0.00E+00
5	GO:0035884: arabinan biosynthetic process	0.00E+00
6	GO:0009409: response to cold	2.46E-07
7	GO:0009414: response to water deprivation	9.03E-07
8	GO:0009631: cold acclimation	2.86E-06
9	GO:0006646: phosphatidylethanolamine biosynthetic process	5.79E-06
10	GO:0000380: alternative mRNA splicing, via spliceosome	9.69E-06
11	GO:0007623: circadian rhythm	6.74E-05
12	GO:1902466: positive regulation of histone H3-K27 trimethylation	7.75E-05
13	GO:0000025: maltose catabolic process	7.75E-05
14	GO:0009609: response to symbiotic bacterium	7.75E-05
15	GO:1903705: positive regulation of production of siRNA involved in RNA interference	7.75E-05
16	GO:0005980: glycogen catabolic process	7.75E-05
17	GO:0005983: starch catabolic process	1.22E-04
18	GO:0030259: lipid glycosylation	1.85E-04
19	GO:0050688: regulation of defense response to virus	1.85E-04
20	GO:0010353: response to trehalose	1.85E-04
21	GO:0015914: phospholipid transport	1.85E-04
22	GO:0010501: RNA secondary structure unwinding	4.24E-04
23	GO:0009737: response to abscisic acid	5.26E-04
24	GO:0006346: methylation-dependent chromatin silencing	5.98E-04
25	GO:0015743: malate transport	5.98E-04
26	GO:1903830: magnesium ion transmembrane transport	5.98E-04
27	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	5.98E-04
28	GO:0010508: positive regulation of autophagy	5.98E-04
29	GO:0006656: phosphatidylcholine biosynthetic process	7.57E-04
30	GO:0097428: protein maturation by iron-sulfur cluster transfer	7.57E-04
31	GO:0031365: N-terminal protein amino acid modification	7.57E-04
32	GO:0009616: virus induced gene silencing	7.57E-04
33	GO:1900425: negative regulation of defense response to bacterium	9.24E-04
34	GO:0035194: posttranscriptional gene silencing by RNA	9.24E-04
35	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	1.10E-03
36	GO:0045926: negative regulation of growth	1.10E-03
37	GO:0010555: response to mannitol	1.10E-03
38	GO:0010043: response to zinc ion	1.18E-03
39	GO:0045087: innate immune response	1.29E-03
40	GO:1902074: response to salt	1.29E-03
41	GO:0015693: magnesium ion transport	1.29E-03
42	GO:0009610: response to symbiotic fungus	1.29E-03
43	GO:0046470: phosphatidylcholine metabolic process	1.29E-03
44	GO:0007050: cell cycle arrest	1.29E-03
45	GO:0010050: vegetative phase change	1.29E-03
46	GO:0009415: response to water	1.48E-03
47	GO:0032508: DNA duplex unwinding	1.48E-03
48	GO:0009819: drought recovery	1.48E-03
49	GO:0044030: regulation of DNA methylation	1.69E-03
50	GO:0001510: RNA methylation	1.69E-03
51	GO:0009644: response to high light intensity	1.78E-03
52	GO:0090333: regulation of stomatal closure	1.91E-03
53	GO:0042538: hyperosmotic salinity response	2.06E-03
54	GO:0010267: production of ta-siRNAs involved in RNA interference	2.14E-03
55	GO:2000280: regulation of root development	2.14E-03
56	GO:0031627: telomeric loop formation	2.37E-03
57	GO:0012501: programmed cell death	2.86E-03
58	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.12E-03
59	GO:0030048: actin filament-based movement	3.12E-03
60	GO:0006006: glucose metabolic process	3.12E-03
61	GO:0080188: RNA-directed DNA methylation	3.66E-03
62	GO:0010025: wax biosynthetic process	3.94E-03
63	GO:0009845: seed germination	4.22E-03
64	GO:0006406: mRNA export from nucleus	4.23E-03
65	GO:0009695: jasmonic acid biosynthetic process	4.52E-03
66	GO:0016575: histone deacetylation	4.52E-03
67	GO:0009735: response to cytokinin	4.64E-03
68	GO:0009651: response to salt stress	4.82E-03
69	GO:0009269: response to desiccation	4.82E-03
70	GO:0010228: vegetative to reproductive phase transition of meristem	5.62E-03
71	GO:0010214: seed coat development	5.77E-03
72	GO:0009561: megagametogenesis	5.77E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.10E-03
74	GO:0045893: positive regulation of transcription, DNA-templated	6.19E-03
75	GO:0042631: cellular response to water deprivation	6.44E-03
76	GO:0000226: microtubule cytoskeleton organization	6.44E-03
77	GO:0008654: phospholipid biosynthetic process	7.49E-03
78	GO:0009791: post-embryonic development	7.49E-03
79	GO:0000302: response to reactive oxygen species	7.85E-03
80	GO:0006635: fatty acid beta-oxidation	7.85E-03
81	GO:0006970: response to osmotic stress	8.94E-03
82	GO:0006914: autophagy	8.97E-03
83	GO:0016125: sterol metabolic process	8.97E-03
84	GO:0010286: heat acclimation	9.36E-03
85	GO:0051607: defense response to virus	9.75E-03
86	GO:0016126: sterol biosynthetic process	1.02E-02
87	GO:0009911: positive regulation of flower development	1.02E-02
88	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.06E-02
89	GO:0006974: cellular response to DNA damage stimulus	1.10E-02
90	GO:0018298: protein-chromophore linkage	1.22E-02
91	GO:0009817: defense response to fungus, incompatible interaction	1.22E-02
92	GO:0009832: plant-type cell wall biogenesis	1.27E-02
93	GO:0009813: flavonoid biosynthetic process	1.27E-02
94	GO:0006811: ion transport	1.31E-02
95	GO:0010119: regulation of stomatal movement	1.36E-02
96	GO:0050832: defense response to fungus	1.44E-02
97	GO:0009637: response to blue light	1.45E-02
98	GO:0030001: metal ion transport	1.59E-02
99	GO:0006897: endocytosis	1.64E-02
100	GO:0042542: response to hydrogen peroxide	1.68E-02
101	GO:0009926: auxin polar transport	1.73E-02
102	GO:0000209: protein polyubiquitination	1.78E-02
103	GO:0008643: carbohydrate transport	1.83E-02
104	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.98E-02
105	GO:0006812: cation transport	2.04E-02
106	GO:0006364: rRNA processing	2.14E-02
107	GO:0046686: response to cadmium ion	2.23E-02
108	GO:0009908: flower development	2.45E-02
109	GO:0009738: abscisic acid-activated signaling pathway	2.62E-02
110	GO:0009553: embryo sac development	2.69E-02
111	GO:0006396: RNA processing	2.81E-02
112	GO:0051726: regulation of cell cycle	2.87E-02
113	GO:0009058: biosynthetic process	3.35E-02
114	GO:0055085: transmembrane transport	3.44E-02
115	GO:0010150: leaf senescence	4.06E-02
116	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.40E-02
117	GO:0006470: protein dephosphorylation	4.47E-02
118	GO:0009617: response to bacterium	4.60E-02
119	GO:0010468: regulation of gene expression	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
2	GO:0004306: ethanolamine-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0004134: 4-alpha-glucanotransferase activity	7.75E-05
4	GO:0004645: phosphorylase activity	7.75E-05
5	GO:0016906: sterol 3-beta-glucosyltransferase activity	7.75E-05
6	GO:0102203: brassicasterol glucosyltransferase activity	7.75E-05
7	GO:0102202: soladodine glucosyltransferase activity	7.75E-05
8	GO:0050521: alpha-glucan, water dikinase activity	7.75E-05
9	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	7.75E-05
10	GO:0008184: glycogen phosphorylase activity	7.75E-05
11	GO:0001047: core promoter binding	1.85E-04
12	GO:0004609: phosphatidylserine decarboxylase activity	1.85E-04
13	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	1.85E-04
14	GO:0004165: dodecenoyl-CoA delta-isomerase activity	4.49E-04
15	GO:0004300: enoyl-CoA hydratase activity	4.49E-04
16	GO:0008526: phosphatidylinositol transporter activity	5.98E-04
17	GO:0005253: anion channel activity	5.98E-04
18	GO:0015562: efflux transmembrane transporter activity	9.24E-04
19	GO:0000293: ferric-chelate reductase activity	9.24E-04
20	GO:0008235: metalloexopeptidase activity	1.29E-03
21	GO:0009881: photoreceptor activity	1.29E-03
22	GO:0015140: malate transmembrane transporter activity	1.29E-03
23	GO:0004630: phospholipase D activity	1.69E-03
24	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	1.69E-03
25	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.69E-03
26	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.91E-03
27	GO:0009672: auxin:proton symporter activity	2.14E-03
28	GO:0004177: aminopeptidase activity	2.61E-03
29	GO:0003691: double-stranded telomeric DNA binding	2.61E-03
30	GO:0015095: magnesium ion transmembrane transporter activity	3.12E-03
31	GO:0000175: 3'-5'-exoribonuclease activity	3.12E-03
32	GO:0008026: ATP-dependent helicase activity	3.31E-03
33	GO:0003774: motor activity	3.38E-03
34	GO:0031624: ubiquitin conjugating enzyme binding	3.38E-03
35	GO:0051536: iron-sulfur cluster binding	4.23E-03
36	GO:0004407: histone deacetylase activity	4.23E-03
37	GO:0008324: cation transmembrane transporter activity	4.52E-03
38	GO:0051087: chaperone binding	4.52E-03
39	GO:0008408: 3'-5' exonuclease activity	4.82E-03
40	GO:0003727: single-stranded RNA binding	5.77E-03
41	GO:0046873: metal ion transmembrane transporter activity	6.78E-03
42	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	6.78E-03
43	GO:0008168: methyltransferase activity	7.99E-03
44	GO:0061630: ubiquitin protein ligase activity	1.08E-02
45	GO:0008375: acetylglucosaminyltransferase activity	1.10E-02
46	GO:0004004: ATP-dependent RNA helicase activity	1.14E-02
47	GO:0005509: calcium ion binding	1.15E-02
48	GO:0044212: transcription regulatory region DNA binding	1.27E-02
49	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.31E-02
50	GO:0004722: protein serine/threonine phosphatase activity	1.35E-02
51	GO:0003824: catalytic activity	1.43E-02
52	GO:0003697: single-stranded DNA binding	1.45E-02
53	GO:0016757: transferase activity, transferring glycosyl groups	1.76E-02
54	GO:0005198: structural molecule activity	1.88E-02
55	GO:0003729: mRNA binding	2.10E-02
56	GO:0003690: double-stranded DNA binding	2.19E-02
57	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.58E-02
58	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.58E-02
59	GO:0003779: actin binding	2.69E-02
60	GO:0043565: sequence-specific DNA binding	3.22E-02
61	GO:0030170: pyridoxal phosphate binding	3.48E-02
62	GO:0005516: calmodulin binding	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0015630: microtubule cytoskeleton	4.49E-04
2	GO:0005847: mRNA cleavage and polyadenylation specificity factor complex	7.57E-04
3	GO:0005655: nucleolar ribonuclease P complex	1.10E-03
4	GO:0009501: amyloplast	1.48E-03
5	GO:0005783: endoplasmic reticulum	1.67E-03
6	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	1.69E-03
7	GO:0000783: nuclear telomere cap complex	1.69E-03
8	GO:0016459: myosin complex	2.37E-03
9	GO:0048471: perinuclear region of cytoplasm	2.61E-03
10	GO:0031307: integral component of mitochondrial outer membrane	2.86E-03
11	GO:0005777: peroxisome	6.19E-03
12	GO:0009506: plasmodesma	6.67E-03
13	GO:0009504: cell plate	7.49E-03
14	GO:0005773: vacuole	1.07E-02
15	GO:0000151: ubiquitin ligase complex	1.22E-02
16	GO:0090406: pollen tube	1.73E-02
17	GO:0031966: mitochondrial membrane	2.04E-02
18	GO:0005789: endoplasmic reticulum membrane	2.17E-02
19	GO:0005834: heterotrimeric G-protein complex	2.52E-02
20	GO:0016021: integral component of membrane	2.58E-02
21	GO:0005654: nucleoplasm	3.17E-02
22	GO:0009524: phragmoplast	3.35E-02
23	GO:0009705: plant-type vacuole membrane	4.06E-02
24	GO:0005622: intracellular	4.79E-02