co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0006482: protein demethylation	0.00E+00
3	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
4	GO:0007141: male meiosis I	0.00E+00
5	GO:0010360: negative regulation of anion channel activity	0.00E+00
6	GO:0006631: fatty acid metabolic process	8.18E-07
7	GO:0001676: long-chain fatty acid metabolic process	7.65E-06
8	GO:0003400: regulation of COPII vesicle coating	1.31E-04
9	GO:0006422: aspartyl-tRNA aminoacylation	1.31E-04
10	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.31E-04
11	GO:0080173: male-female gamete recognition during double fertilization	1.31E-04
12	GO:0006481: C-terminal protein methylation	1.31E-04
13	GO:0010036: response to boron-containing substance	1.31E-04
14	GO:0033306: phytol metabolic process	1.31E-04
15	GO:1902361: mitochondrial pyruvate transmembrane transport	1.31E-04
16	GO:0034214: protein hexamerization	1.31E-04
17	GO:0010482: regulation of epidermal cell division	1.31E-04
18	GO:0048767: root hair elongation	2.06E-04
19	GO:0006850: mitochondrial pyruvate transport	3.03E-04
20	GO:0019441: tryptophan catabolic process to kynurenine	3.03E-04
21	GO:0097054: L-glutamate biosynthetic process	3.03E-04
22	GO:0031648: protein destabilization	3.03E-04
23	GO:0019521: D-gluconate metabolic process	3.03E-04
24	GO:0080029: cellular response to boron-containing substance levels	3.03E-04
25	GO:1904961: quiescent center organization	3.03E-04
26	GO:0031349: positive regulation of defense response	3.03E-04
27	GO:0060919: auxin influx	3.03E-04
28	GO:0007034: vacuolar transport	3.34E-04
29	GO:0072661: protein targeting to plasma membrane	4.99E-04
30	GO:0010447: response to acidic pH	4.99E-04
31	GO:0002230: positive regulation of defense response to virus by host	4.99E-04
32	GO:0031408: oxylipin biosynthetic process	5.61E-04
33	GO:0055114: oxidation-reduction process	6.34E-04
34	GO:1902290: positive regulation of defense response to oomycetes	7.14E-04
35	GO:0070676: intralumenal vesicle formation	7.14E-04
36	GO:0046713: borate transport	7.14E-04
37	GO:0019438: aromatic compound biosynthetic process	7.14E-04
38	GO:0015700: arsenite transport	7.14E-04
39	GO:0006537: glutamate biosynthetic process	7.14E-04
40	GO:0019676: ammonia assimilation cycle	9.47E-04
41	GO:0051567: histone H3-K9 methylation	9.47E-04
42	GO:0046686: response to cadmium ion	1.19E-03
43	GO:0050665: hydrogen peroxide biosynthetic process	1.47E-03
44	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.47E-03
45	GO:0048232: male gamete generation	1.47E-03
46	GO:0070814: hydrogen sulfide biosynthetic process	1.47E-03
47	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.47E-03
48	GO:0010315: auxin efflux	1.47E-03
49	GO:0009612: response to mechanical stimulus	1.76E-03
50	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.76E-03
51	GO:0000911: cytokinesis by cell plate formation	1.76E-03
52	GO:1900057: positive regulation of leaf senescence	2.06E-03
53	GO:0010044: response to aluminum ion	2.06E-03
54	GO:0043090: amino acid import	2.06E-03
55	GO:0006605: protein targeting	2.39E-03
56	GO:0019375: galactolipid biosynthetic process	2.39E-03
57	GO:2000070: regulation of response to water deprivation	2.39E-03
58	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.39E-03
59	GO:0009699: phenylpropanoid biosynthetic process	2.73E-03
60	GO:0009657: plastid organization	2.73E-03
61	GO:0046685: response to arsenic-containing substance	3.08E-03
62	GO:0009051: pentose-phosphate shunt, oxidative branch	3.08E-03
63	GO:0006098: pentose-phosphate shunt	3.08E-03
64	GO:0019432: triglyceride biosynthetic process	3.08E-03
65	GO:0015031: protein transport	3.14E-03
66	GO:0051707: response to other organism	3.32E-03
67	GO:1900426: positive regulation of defense response to bacterium	3.46E-03
68	GO:0030042: actin filament depolymerization	3.46E-03
69	GO:0010449: root meristem growth	3.46E-03
70	GO:0006468: protein phosphorylation	3.67E-03
71	GO:0000103: sulfate assimilation	3.84E-03
72	GO:0043069: negative regulation of programmed cell death	3.84E-03
73	GO:0006896: Golgi to vacuole transport	3.84E-03
74	GO:0051026: chiasma assembly	3.84E-03
75	GO:0019538: protein metabolic process	3.84E-03
76	GO:0016192: vesicle-mediated transport	4.06E-03
77	GO:0046777: protein autophosphorylation	4.15E-03
78	GO:0048765: root hair cell differentiation	4.24E-03
79	GO:0009698: phenylpropanoid metabolic process	4.24E-03
80	GO:0006006: glucose metabolic process	5.08E-03
81	GO:0010540: basipetal auxin transport	5.52E-03
82	GO:0009266: response to temperature stimulus	5.52E-03
83	GO:0010053: root epidermal cell differentiation	5.97E-03
84	GO:0046688: response to copper ion	5.97E-03
85	GO:0009695: jasmonic acid biosynthetic process	7.40E-03
86	GO:0006825: copper ion transport	7.40E-03
87	GO:0010026: trichome differentiation	7.40E-03
88	GO:0030433: ubiquitin-dependent ERAD pathway	8.42E-03
89	GO:0031348: negative regulation of defense response	8.42E-03
90	GO:0006730: one-carbon metabolic process	8.42E-03
91	GO:0007131: reciprocal meiotic recombination	8.42E-03
92	GO:0009306: protein secretion	9.49E-03
93	GO:0016117: carotenoid biosynthetic process	1.00E-02
94	GO:0006633: fatty acid biosynthetic process	1.00E-02
95	GO:0061025: membrane fusion	1.18E-02
96	GO:0006623: protein targeting to vacuole	1.24E-02
97	GO:0006470: protein dephosphorylation	1.26E-02
98	GO:0010193: response to ozone	1.30E-02
99	GO:0009617: response to bacterium	1.31E-02
100	GO:0009630: gravitropism	1.36E-02
101	GO:0010583: response to cyclopentenone	1.36E-02
102	GO:0030163: protein catabolic process	1.42E-02
103	GO:0006310: DNA recombination	1.49E-02
104	GO:0016579: protein deubiquitination	1.62E-02
105	GO:0009651: response to salt stress	1.69E-02
106	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.75E-02
107	GO:0009816: defense response to bacterium, incompatible interaction	1.75E-02
108	GO:0006906: vesicle fusion	1.82E-02
109	GO:0006888: ER to Golgi vesicle-mediated transport	1.89E-02
110	GO:0006511: ubiquitin-dependent protein catabolic process	1.91E-02
111	GO:0006499: N-terminal protein myristoylation	2.18E-02
112	GO:0009407: toxin catabolic process	2.18E-02
113	GO:0010043: response to zinc ion	2.25E-02
114	GO:0007568: aging	2.25E-02
115	GO:0006865: amino acid transport	2.33E-02
116	GO:0045087: innate immune response	2.41E-02
117	GO:0009853: photorespiration	2.41E-02
118	GO:0045454: cell redox homeostasis	2.53E-02
119	GO:0009737: response to abscisic acid	2.57E-02
120	GO:0006887: exocytosis	2.72E-02
121	GO:0009926: auxin polar transport	2.88E-02
122	GO:0009644: response to high light intensity	3.05E-02
123	GO:0006979: response to oxidative stress	3.17E-02
124	GO:0006260: DNA replication	3.30E-02
125	GO:0009846: pollen germination	3.39E-02
126	GO:0006096: glycolytic process	4.01E-02
127	GO:0048367: shoot system development	4.11E-02
128	GO:0009620: response to fungus	4.29E-02
129	GO:0009734: auxin-activated signaling pathway	4.39E-02
130	GO:0018105: peptidyl-serine phosphorylation	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0051723: protein methylesterase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
4	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
5	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
6	GO:0015930: glutamate synthase activity	0.00E+00
7	GO:0102391: decanoate--CoA ligase activity	4.03E-07
8	GO:0004467: long-chain fatty acid-CoA ligase activity	6.60E-07
9	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.53E-05
10	GO:0051920: peroxiredoxin activity	4.98E-05
11	GO:0005524: ATP binding	7.77E-05
12	GO:0016209: antioxidant activity	8.68E-05
13	GO:0005090: Sar guanyl-nucleotide exchange factor activity	1.31E-04
14	GO:0004321: fatty-acyl-CoA synthase activity	1.31E-04
15	GO:0016041: glutamate synthase (ferredoxin) activity	1.31E-04
16	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	1.31E-04
17	GO:0004815: aspartate-tRNA ligase activity	1.31E-04
18	GO:0008802: betaine-aldehyde dehydrogenase activity	1.31E-04
19	GO:0010209: vacuolar sorting signal binding	1.31E-04
20	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.62E-04
21	GO:0008171: O-methyltransferase activity	1.92E-04
22	GO:0004061: arylformamidase activity	3.03E-04
23	GO:0003958: NADPH-hemoprotein reductase activity	3.03E-04
24	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.03E-04
25	GO:0015105: arsenite transmembrane transporter activity	3.03E-04
26	GO:0004674: protein serine/threonine kinase activity	3.92E-04
27	GO:0004781: sulfate adenylyltransferase (ATP) activity	4.99E-04
28	GO:0016531: copper chaperone activity	4.99E-04
29	GO:0050833: pyruvate transmembrane transporter activity	4.99E-04
30	GO:0046715: borate transmembrane transporter activity	7.14E-04
31	GO:0008276: protein methyltransferase activity	7.14E-04
32	GO:0009916: alternative oxidase activity	9.47E-04
33	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.47E-04
34	GO:0010328: auxin influx transmembrane transporter activity	9.47E-04
35	GO:0003995: acyl-CoA dehydrogenase activity	9.47E-04
36	GO:0004672: protein kinase activity	1.06E-03
37	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.20E-03
38	GO:0051538: 3 iron, 4 sulfur cluster binding	1.20E-03
39	GO:0016301: kinase activity	1.45E-03
40	GO:0036402: proteasome-activating ATPase activity	1.47E-03
41	GO:0004602: glutathione peroxidase activity	1.76E-03
42	GO:0004144: diacylglycerol O-acyltransferase activity	1.76E-03
43	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.76E-03
44	GO:0051020: GTPase binding	1.76E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.76E-03
46	GO:0043295: glutathione binding	2.06E-03
47	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.82E-03
48	GO:0004601: peroxidase activity	2.90E-03
49	GO:0016207: 4-coumarate-CoA ligase activity	3.08E-03
50	GO:0071949: FAD binding	3.08E-03
51	GO:0005484: SNAP receptor activity	3.32E-03
52	GO:0047617: acyl-CoA hydrolase activity	3.46E-03
53	GO:0030955: potassium ion binding	3.46E-03
54	GO:0004743: pyruvate kinase activity	3.46E-03
55	GO:0004713: protein tyrosine kinase activity	3.84E-03
56	GO:0008559: xenobiotic-transporting ATPase activity	4.24E-03
57	GO:0010329: auxin efflux transmembrane transporter activity	5.08E-03
58	GO:0004722: protein serine/threonine phosphatase activity	5.38E-03
59	GO:0017025: TBP-class protein binding	5.97E-03
60	GO:0016787: hydrolase activity	7.80E-03
61	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.91E-03
62	GO:0016887: ATPase activity	1.09E-02
63	GO:0010181: FMN binding	1.18E-02
64	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.30E-02
65	GO:0046872: metal ion binding	1.35E-02
66	GO:0016597: amino acid binding	1.62E-02
67	GO:0051213: dioxygenase activity	1.68E-02
68	GO:0015250: water channel activity	1.68E-02
69	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.82E-02
70	GO:0004683: calmodulin-dependent protein kinase activity	1.89E-02
71	GO:0004806: triglyceride lipase activity	1.89E-02
72	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.96E-02
73	GO:0005096: GTPase activator activity	2.11E-02
74	GO:0005516: calmodulin binding	2.17E-02
75	GO:0003993: acid phosphatase activity	2.48E-02
76	GO:0000149: SNARE binding	2.56E-02
77	GO:0050661: NADP binding	2.64E-02
78	GO:0004364: glutathione transferase activity	2.80E-02
79	GO:0005509: calcium ion binding	2.84E-02
80	GO:0015293: symporter activity	3.13E-02
81	GO:0005198: structural molecule activity	3.13E-02
82	GO:0003824: catalytic activity	3.53E-02
83	GO:0015171: amino acid transmembrane transporter activity	3.83E-02
84	GO:0008234: cysteine-type peptidase activity	3.83E-02
85	GO:0016874: ligase activity	4.39E-02
86	GO:0003779: actin binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0046862: chromoplast membrane	0.00E+00
3	GO:0005829: cytosol	4.99E-07
4	GO:0005886: plasma membrane	1.80E-05
5	GO:0031901: early endosome membrane	1.34E-04
6	GO:0005777: peroxisome	1.46E-04
7	GO:0005783: endoplasmic reticulum	3.20E-04
8	GO:0016328: lateral plasma membrane	4.99E-04
9	GO:0030139: endocytic vesicle	4.99E-04
10	GO:0000502: proteasome complex	5.46E-04
11	GO:0032585: multivesicular body membrane	7.14E-04
12	GO:0005770: late endosome	9.05E-04
13	GO:0009504: cell plate	1.04E-03
14	GO:0005623: cell	1.15E-03
15	GO:0005771: multivesicular body	1.47E-03
16	GO:0031597: cytosolic proteasome complex	1.76E-03
17	GO:0000815: ESCRT III complex	1.76E-03
18	GO:0031595: nuclear proteasome complex	2.06E-03
19	GO:0031305: integral component of mitochondrial inner membrane	2.39E-03
20	GO:0030665: clathrin-coated vesicle membrane	3.46E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	3.46E-03
22	GO:0017119: Golgi transport complex	3.84E-03
23	GO:0008541: proteasome regulatory particle, lid subcomplex	4.24E-03
24	GO:0030176: integral component of endoplasmic reticulum membrane	5.97E-03
25	GO:0043234: protein complex	6.43E-03
26	GO:0005769: early endosome	6.43E-03
27	GO:0005622: intracellular	6.78E-03
28	GO:0005758: mitochondrial intermembrane space	6.91E-03
29	GO:0045271: respiratory chain complex I	7.40E-03
30	GO:0070469: respiratory chain	7.40E-03
31	GO:0005741: mitochondrial outer membrane	7.91E-03
32	GO:0015629: actin cytoskeleton	8.95E-03
33	GO:0000790: nuclear chromatin	1.00E-02
34	GO:0009506: plasmodesma	1.28E-02
35	GO:0005778: peroxisomal membrane	1.55E-02
36	GO:0009570: chloroplast stroma	1.98E-02
37	GO:0005794: Golgi apparatus	2.54E-02
38	GO:0005819: spindle	2.56E-02
39	GO:0009507: chloroplast	2.65E-02
40	GO:0031902: late endosome membrane	2.72E-02
41	GO:0031201: SNARE complex	2.72E-02
42	GO:0005768: endosome	2.76E-02
43	GO:0031966: mitochondrial membrane	3.39E-02
44	GO:0005635: nuclear envelope	3.74E-02
45	GO:0010008: endosome membrane	4.11E-02
46	GO:0005747: mitochondrial respiratory chain complex I	4.11E-02
47	GO:0005887: integral component of plasma membrane	4.23E-02