co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010398: xylogalacturonan metabolic process	0.00E+00
2	GO:1901535: regulation of DNA demethylation	0.00E+00
3	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
4	GO:0002191: cap-dependent translational initiation	0.00E+00
5	GO:0000162: tryptophan biosynthetic process	1.55E-09
6	GO:0046686: response to cadmium ion	4.80E-06
7	GO:0009851: auxin biosynthetic process	5.44E-05
8	GO:0009808: lignin metabolic process	9.23E-05
9	GO:0009623: response to parasitic fungus	1.18E-04
10	GO:0052544: defense response by callose deposition in cell wall	1.91E-04
11	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.73E-04
12	GO:0034398: telomere tethering at nuclear periphery	2.73E-04
13	GO:0002215: defense response to nematode	2.73E-04
14	GO:0009636: response to toxic substance	3.55E-04
15	GO:0017006: protein-tetrapyrrole linkage	4.52E-04
16	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.52E-04
17	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	4.52E-04
18	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	6.47E-04
19	GO:0019438: aromatic compound biosynthetic process	6.47E-04
20	GO:0009584: detection of visible light	6.47E-04
21	GO:0048830: adventitious root development	8.60E-04
22	GO:1902584: positive regulation of response to water deprivation	8.60E-04
23	GO:0042273: ribosomal large subunit biogenesis	8.60E-04
24	GO:0010600: regulation of auxin biosynthetic process	8.60E-04
25	GO:0010107: potassium ion import	8.60E-04
26	GO:0009630: gravitropism	1.02E-03
27	GO:0006564: L-serine biosynthetic process	1.08E-03
28	GO:0007029: endoplasmic reticulum organization	1.08E-03
29	GO:0030308: negative regulation of cell growth	1.08E-03
30	GO:0006090: pyruvate metabolic process	1.08E-03
31	GO:0009759: indole glucosinolate biosynthetic process	1.33E-03
32	GO:0001731: formation of translation preinitiation complex	1.33E-03
33	GO:0001666: response to hypoxia	1.36E-03
34	GO:0048280: vesicle fusion with Golgi apparatus	1.59E-03
35	GO:0009817: defense response to fungus, incompatible interaction	1.77E-03
36	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.87E-03
37	GO:0080027: response to herbivore	1.87E-03
38	GO:0009407: toxin catabolic process	1.94E-03
39	GO:0006102: isocitrate metabolic process	2.16E-03
40	GO:0016559: peroxisome fission	2.16E-03
41	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.16E-03
42	GO:0006099: tricarboxylic acid cycle	2.33E-03
43	GO:0006526: arginine biosynthetic process	2.46E-03
44	GO:0044030: regulation of DNA methylation	2.46E-03
45	GO:0030968: endoplasmic reticulum unfolded protein response	2.46E-03
46	GO:0006002: fructose 6-phosphate metabolic process	2.46E-03
47	GO:0009051: pentose-phosphate shunt, oxidative branch	2.78E-03
48	GO:0034765: regulation of ion transmembrane transport	2.78E-03
49	GO:0090333: regulation of stomatal closure	2.78E-03
50	GO:0009723: response to ethylene	2.87E-03
51	GO:0016573: histone acetylation	3.12E-03
52	GO:0006032: chitin catabolic process	3.46E-03
53	GO:0009688: abscisic acid biosynthetic process	3.46E-03
54	GO:0009641: shade avoidance	3.46E-03
55	GO:0006896: Golgi to vacuole transport	3.46E-03
56	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.46E-03
57	GO:0000272: polysaccharide catabolic process	3.82E-03
58	GO:0030148: sphingolipid biosynthetic process	3.82E-03
59	GO:0009684: indoleacetic acid biosynthetic process	3.82E-03
60	GO:0009698: phenylpropanoid metabolic process	3.82E-03
61	GO:0009682: induced systemic resistance	3.82E-03
62	GO:0006813: potassium ion transport	3.84E-03
63	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.19E-03
64	GO:0071365: cellular response to auxin stimulus	4.19E-03
65	GO:0000266: mitochondrial fission	4.19E-03
66	GO:0045037: protein import into chloroplast stroma	4.19E-03
67	GO:0006108: malate metabolic process	4.57E-03
68	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.57E-03
69	GO:0009626: plant-type hypersensitive response	4.83E-03
70	GO:0006446: regulation of translational initiation	4.97E-03
71	GO:0007031: peroxisome organization	5.37E-03
72	GO:0042343: indole glucosinolate metabolic process	5.37E-03
73	GO:0006406: mRNA export from nucleus	6.22E-03
74	GO:0080147: root hair cell development	6.22E-03
75	GO:0009695: jasmonic acid biosynthetic process	6.66E-03
76	GO:0016998: cell wall macromolecule catabolic process	7.11E-03
77	GO:0051260: protein homooligomerization	7.11E-03
78	GO:0098542: defense response to other organism	7.11E-03
79	GO:0031408: oxylipin biosynthetic process	7.11E-03
80	GO:0071456: cellular response to hypoxia	7.57E-03
81	GO:0010017: red or far-red light signaling pathway	7.57E-03
82	GO:0009814: defense response, incompatible interaction	7.57E-03
83	GO:0016226: iron-sulfur cluster assembly	7.57E-03
84	GO:0071369: cellular response to ethylene stimulus	8.05E-03
85	GO:0006012: galactose metabolic process	8.05E-03
86	GO:0071215: cellular response to abscisic acid stimulus	8.05E-03
87	GO:0042147: retrograde transport, endosome to Golgi	9.02E-03
88	GO:0051028: mRNA transport	9.02E-03
89	GO:0006606: protein import into nucleus	9.53E-03
90	GO:0042391: regulation of membrane potential	9.53E-03
91	GO:0045489: pectin biosynthetic process	1.00E-02
92	GO:0006885: regulation of pH	1.00E-02
93	GO:0006623: protein targeting to vacuole	1.11E-02
94	GO:0009617: response to bacterium	1.13E-02
95	GO:0006891: intra-Golgi vesicle-mediated transport	1.16E-02
96	GO:0002229: defense response to oomycetes	1.16E-02
97	GO:0032502: developmental process	1.22E-02
98	GO:0010583: response to cyclopentenone	1.22E-02
99	GO:0051607: defense response to virus	1.45E-02
100	GO:0009615: response to virus	1.51E-02
101	GO:0009816: defense response to bacterium, incompatible interaction	1.57E-02
102	GO:0009627: systemic acquired resistance	1.63E-02
103	GO:0006888: ER to Golgi vesicle-mediated transport	1.70E-02
104	GO:0018298: protein-chromophore linkage	1.82E-02
105	GO:0008219: cell death	1.82E-02
106	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.88E-02
107	GO:0048767: root hair elongation	1.89E-02
108	GO:0010311: lateral root formation	1.89E-02
109	GO:0046777: protein autophosphorylation	1.94E-02
110	GO:0010043: response to zinc ion	2.02E-02
111	GO:0009910: negative regulation of flower development	2.02E-02
112	GO:0010114: response to red light	2.59E-02
113	GO:0042742: defense response to bacterium	2.60E-02
114	GO:0000209: protein polyubiquitination	2.66E-02
115	GO:0006397: mRNA processing	2.80E-02
116	GO:0006855: drug transmembrane transport	2.88E-02
117	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.96E-02
118	GO:0009733: response to auxin	3.00E-02
119	GO:0006812: cation transport	3.04E-02
120	GO:0009585: red, far-red light phototransduction	3.20E-02
121	GO:0009873: ethylene-activated signaling pathway	3.46E-02
122	GO:0006096: glycolytic process	3.60E-02
123	GO:0009651: response to salt stress	3.98E-02
124	GO:0018105: peptidyl-serine phosphorylation	4.19E-02
125	GO:0009735: response to cytokinin	4.34E-02
126	GO:0009611: response to wounding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0047634: agmatine N4-coumaroyltransferase activity	0.00E+00
3	GO:0098808: mRNA cap binding	0.00E+00
4	GO:0004834: tryptophan synthase activity	1.18E-05
5	GO:0005496: steroid binding	1.95E-05
6	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.18E-04
7	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.18E-04
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.18E-04
9	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.18E-04
10	GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity	2.73E-04
11	GO:0047209: coniferyl-alcohol glucosyltransferase activity	2.73E-04
12	GO:0009883: red or far-red light photoreceptor activity	2.73E-04
13	GO:0045140: inositol phosphoceramide synthase activity	2.73E-04
14	GO:0004364: glutathione transferase activity	2.89E-04
15	GO:0008061: chitin binding	3.23E-04
16	GO:0008020: G-protein coupled photoreceptor activity	4.52E-04
17	GO:0016805: dipeptidase activity	4.52E-04
18	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	4.52E-04
19	GO:0004049: anthranilate synthase activity	4.52E-04
20	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.52E-04
21	GO:0016656: monodehydroascorbate reductase (NADH) activity	6.47E-04
22	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.47E-04
23	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	8.60E-04
24	GO:0004737: pyruvate decarboxylase activity	8.60E-04
25	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.60E-04
26	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	8.60E-04
27	GO:0004470: malic enzyme activity	8.60E-04
28	GO:0004031: aldehyde oxidase activity	8.60E-04
29	GO:0050302: indole-3-acetaldehyde oxidase activity	8.60E-04
30	GO:0008948: oxaloacetate decarboxylase activity	1.08E-03
31	GO:0035252: UDP-xylosyltransferase activity	1.33E-03
32	GO:0030976: thiamine pyrophosphate binding	1.33E-03
33	GO:0004656: procollagen-proline 4-dioxygenase activity	1.59E-03
34	GO:0005242: inward rectifier potassium channel activity	1.59E-03
35	GO:0051020: GTPase binding	1.59E-03
36	GO:0042802: identical protein binding	1.86E-03
37	GO:0008143: poly(A) binding	1.87E-03
38	GO:0043295: glutathione binding	1.87E-03
39	GO:0004620: phospholipase activity	1.87E-03
40	GO:0016831: carboxy-lyase activity	1.87E-03
41	GO:0008235: metalloexopeptidase activity	1.87E-03
42	GO:0009881: photoreceptor activity	1.87E-03
43	GO:0003872: 6-phosphofructokinase activity	1.87E-03
44	GO:0030145: manganese ion binding	2.04E-03
45	GO:0017056: structural constituent of nuclear pore	2.16E-03
46	GO:0015288: porin activity	2.16E-03
47	GO:0004034: aldose 1-epimerase activity	2.16E-03
48	GO:0003746: translation elongation factor activity	2.23E-03
49	GO:0016207: 4-coumarate-CoA ligase activity	2.78E-03
50	GO:0071949: FAD binding	2.78E-03
51	GO:0005487: nucleocytoplasmic transporter activity	3.12E-03
52	GO:0004568: chitinase activity	3.46E-03
53	GO:0008171: O-methyltransferase activity	3.46E-03
54	GO:0004713: protein tyrosine kinase activity	3.46E-03
55	GO:0004177: aminopeptidase activity	3.82E-03
56	GO:0047372: acylglycerol lipase activity	3.82E-03
57	GO:0004521: endoribonuclease activity	4.19E-03
58	GO:0004022: alcohol dehydrogenase (NAD) activity	4.57E-03
59	GO:0008139: nuclear localization sequence binding	4.57E-03
60	GO:0000155: phosphorelay sensor kinase activity	4.57E-03
61	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.97E-03
62	GO:0031624: ubiquitin conjugating enzyme binding	4.97E-03
63	GO:0016746: transferase activity, transferring acyl groups	5.62E-03
64	GO:0051536: iron-sulfur cluster binding	6.22E-03
65	GO:0031418: L-ascorbic acid binding	6.22E-03
66	GO:0043424: protein histidine kinase binding	6.66E-03
67	GO:0004540: ribonuclease activity	7.11E-03
68	GO:0005451: monovalent cation:proton antiporter activity	9.53E-03
69	GO:0030551: cyclic nucleotide binding	9.53E-03
70	GO:0001085: RNA polymerase II transcription factor binding	1.00E-02
71	GO:0016853: isomerase activity	1.06E-02
72	GO:0015299: solute:proton antiporter activity	1.06E-02
73	GO:0010181: FMN binding	1.06E-02
74	GO:0004872: receptor activity	1.11E-02
75	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.20E-02
76	GO:0015385: sodium:proton antiporter activity	1.28E-02
77	GO:0016791: phosphatase activity	1.33E-02
78	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.63E-02
79	GO:0050660: flavin adenine dinucleotide binding	1.69E-02
80	GO:0004683: calmodulin-dependent protein kinase activity	1.70E-02
81	GO:0004721: phosphoprotein phosphatase activity	1.70E-02
82	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.76E-02
83	GO:0015238: drug transmembrane transporter activity	1.89E-02
84	GO:0061630: ubiquitin protein ligase activity	1.91E-02
85	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.02E-02
86	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.02E-02
87	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.16E-02
88	GO:0042803: protein homodimerization activity	2.28E-02
89	GO:0000149: SNARE binding	2.30E-02
90	GO:0051539: 4 iron, 4 sulfur cluster binding	2.37E-02
91	GO:0005506: iron ion binding	2.55E-02
92	GO:0005484: SNAP receptor activity	2.59E-02
93	GO:0005515: protein binding	2.72E-02
94	GO:0051537: 2 iron, 2 sulfur cluster binding	2.73E-02
95	GO:0051287: NAD binding	2.96E-02
96	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.20E-02
97	GO:0016298: lipase activity	3.28E-02
98	GO:0015171: amino acid transmembrane transporter activity	3.44E-02
99	GO:0045735: nutrient reservoir activity	3.60E-02
100	GO:0008270: zinc ion binding	3.82E-02
101	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.85E-02
102	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.85E-02
103	GO:0016874: ligase activity	3.94E-02
104	GO:0004672: protein kinase activity	4.18E-02
105	GO:0005524: ATP binding	4.18E-02
106	GO:0020037: heme binding	4.56E-02
107	GO:0000166: nucleotide binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	5.59E-07
2	GO:0005774: vacuolar membrane	1.56E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	1.18E-04
4	GO:0005950: anthranilate synthase complex	2.73E-04
5	GO:0005773: vacuole	3.13E-04
6	GO:0005853: eukaryotic translation elongation factor 1 complex	4.52E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.52E-04
8	GO:0044614: nuclear pore cytoplasmic filaments	4.52E-04
9	GO:0016020: membrane	4.63E-04
10	GO:0005783: endoplasmic reticulum	6.57E-04
11	GO:0005945: 6-phosphofructokinase complex	1.08E-03
12	GO:0030140: trans-Golgi network transport vesicle	1.33E-03
13	GO:0016282: eukaryotic 43S preinitiation complex	1.33E-03
14	GO:0005886: plasma membrane	1.57E-03
15	GO:0033290: eukaryotic 48S preinitiation complex	1.59E-03
16	GO:0030687: preribosome, large subunit precursor	1.87E-03
17	GO:0016021: integral component of membrane	2.12E-03
18	GO:0012507: ER to Golgi transport vesicle membrane	2.16E-03
19	GO:0005779: integral component of peroxisomal membrane	2.46E-03
20	GO:0010494: cytoplasmic stress granule	2.78E-03
21	GO:0016604: nuclear body	3.12E-03
22	GO:0009570: chloroplast stroma	5.11E-03
23	GO:0009506: plasmodesma	8.93E-03
24	GO:0005770: late endosome	1.00E-02
25	GO:0031965: nuclear membrane	1.11E-02
26	GO:0005778: peroxisomal membrane	1.39E-02
27	GO:0005667: transcription factor complex	1.63E-02
28	GO:0000151: ubiquitin ligase complex	1.82E-02
29	GO:0005802: trans-Golgi network	1.94E-02
30	GO:0000325: plant-type vacuole	2.02E-02
31	GO:0031201: SNARE complex	2.44E-02
32	GO:0031902: late endosome membrane	2.44E-02
33	GO:0005635: nuclear envelope	3.36E-02
34	GO:0010008: endosome membrane	3.68E-02
35	GO:0012505: endomembrane system	4.02E-02
36	GO:0009706: chloroplast inner membrane	4.11E-02
37	GO:0005789: endoplasmic reticulum membrane	4.38E-02
38	GO:0005623: cell	4.91E-02
39	GO:0009524: phragmoplast	5.00E-02