co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55605

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019918: peptidyl-arginine methylation, to symmetrical-dimethyl arginine	0.00E+00
2	GO:0072321: chaperone-mediated protein transport	0.00E+00
3	GO:0071433: cell wall repair	0.00E+00
4	GO:0071731: response to nitric oxide	0.00E+00
5	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
6	GO:0006626: protein targeting to mitochondrion	5.29E-08
7	GO:0006412: translation	1.83E-06
8	GO:0000027: ribosomal large subunit assembly	2.10E-05
9	GO:0007005: mitochondrion organization	2.99E-05
10	GO:0010220: positive regulation of vernalization response	3.88E-05
11	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.88E-05
12	GO:1902626: assembly of large subunit precursor of preribosome	6.95E-05
13	GO:0045039: protein import into mitochondrial inner membrane	6.95E-05
14	GO:0006591: ornithine metabolic process	6.95E-05
15	GO:0000460: maturation of 5.8S rRNA	1.45E-04
16	GO:0000470: maturation of LSU-rRNA	2.34E-04
17	GO:0006605: protein targeting	3.84E-04
18	GO:0006526: arginine biosynthetic process	4.37E-04
19	GO:0010162: seed dormancy process	6.08E-04
20	GO:0006820: anion transport	7.29E-04
21	GO:0048467: gynoecium development	8.55E-04
22	GO:0009944: polarity specification of adaxial/abaxial axis	1.05E-03
23	GO:0030150: protein import into mitochondrial matrix	1.05E-03
24	GO:0042254: ribosome biogenesis	1.07E-03
25	GO:0015992: proton transport	1.19E-03
26	GO:0006334: nucleosome assembly	1.19E-03
27	GO:0009294: DNA mediated transformation	1.34E-03
28	GO:0046686: response to cadmium ion	1.52E-03
29	GO:0006520: cellular amino acid metabolic process	1.65E-03
30	GO:0016049: cell growth	2.80E-03
31	GO:0006811: ion transport	3.09E-03
32	GO:0048527: lateral root development	3.20E-03
33	GO:0010043: response to zinc ion	3.20E-03
34	GO:0000154: rRNA modification	4.37E-03
35	GO:0006364: rRNA processing	4.95E-03
36	GO:0009909: regulation of flower development	5.31E-03
37	GO:0016569: covalent chromatin modification	6.05E-03
38	GO:0009723: response to ethylene	1.39E-02
39	GO:0006886: intracellular protein transport	1.70E-02
40	GO:0048364: root development	1.99E-02
41	GO:0009734: auxin-activated signaling pathway	2.46E-02
42	GO:0051301: cell division	3.08E-02
43	GO:0055085: transmembrane transport	3.44E-02
44	GO:0006511: ubiquitin-dependent protein catabolic process	3.61E-02
45	GO:0042742: defense response to bacterium	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	6.61E-08
3	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.08E-06
4	GO:0043021: ribonucleoprotein complex binding	3.88E-05
5	GO:0016743: carboxyl- or carbamoyltransferase activity	3.88E-05
6	GO:0008469: histone-arginine N-methyltransferase activity	6.95E-05
7	GO:0008276: protein methyltransferase activity	1.05E-04
8	GO:0004017: adenylate kinase activity	2.82E-04
9	GO:0030515: snoRNA binding	3.32E-04
10	GO:0015288: porin activity	3.84E-04
11	GO:0008308: voltage-gated anion channel activity	4.37E-04
12	GO:0019843: rRNA binding	5.13E-04
13	GO:0015266: protein channel activity	7.91E-04
14	GO:0004407: histone deacetylase activity	1.05E-03
15	GO:0005528: FK506 binding	1.05E-03
16	GO:0004298: threonine-type endopeptidase activity	1.19E-03
17	GO:0016597: amino acid binding	2.33E-03
18	GO:0042393: histone binding	3.71E-03
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.49E-03
20	GO:0005507: copper ion binding	4.69E-03
21	GO:0008565: protein transporter activity	8.35E-03
22	GO:0008233: peptidase activity	1.44E-02
23	GO:0000166: nucleotide binding	2.90E-02
24	GO:0005509: calcium ion binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005730: nucleolus	2.90E-11
3	GO:0005840: ribosome	6.16E-06
4	GO:0005758: mitochondrial intermembrane space	2.10E-05
5	GO:0070545: PeBoW complex	3.88E-05
6	GO:0005774: vacuolar membrane	9.74E-05
7	GO:0005743: mitochondrial inner membrane	1.52E-04
8	GO:0005739: mitochondrion	1.85E-04
9	GO:0031428: box C/D snoRNP complex	2.34E-04
10	GO:0030687: preribosome, large subunit precursor	3.32E-04
11	GO:0005747: mitochondrial respiratory chain complex I	3.54E-04
12	GO:0046930: pore complex	4.37E-04
13	GO:0019773: proteasome core complex, alpha-subunit complex	4.37E-04
14	GO:0005742: mitochondrial outer membrane translocase complex	4.37E-04
15	GO:0032040: small-subunit processome	7.29E-04
16	GO:0022627: cytosolic small ribosomal subunit	9.10E-04
17	GO:0005741: mitochondrial outer membrane	1.19E-03
18	GO:0005839: proteasome core complex	1.19E-03
19	GO:0005773: vacuole	1.34E-03
20	GO:0022625: cytosolic large ribosomal subunit	1.36E-03
21	GO:0005829: cytosol	1.36E-03
22	GO:0022626: cytosolic ribosome	3.17E-03
23	GO:0015934: large ribosomal subunit	3.20E-03
24	GO:0000502: proteasome complex	4.95E-03
25	GO:0005834: heterotrimeric G-protein complex	5.80E-03
26	GO:0005654: nucleoplasm	7.24E-03
27	GO:0005623: cell	7.51E-03
28	GO:0005759: mitochondrial matrix	8.64E-03
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.34E-02
30	GO:0005622: intracellular	4.37E-02