co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032544: plastid translation	7.48E-11
6	GO:0090391: granum assembly	4.23E-06
7	GO:0010196: nonphotochemical quenching	8.40E-05
8	GO:0009658: chloroplast organization	9.08E-05
9	GO:0042254: ribosome biogenesis	9.45E-05
10	GO:1904966: positive regulation of vitamin E biosynthetic process	1.52E-04
11	GO:1904964: positive regulation of phytol biosynthetic process	1.52E-04
12	GO:0042759: long-chain fatty acid biosynthetic process	1.52E-04
13	GO:0005991: trehalose metabolic process	1.52E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	1.52E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.52E-04
16	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.52E-04
17	GO:0010027: thylakoid membrane organization	1.74E-04
18	GO:0015979: photosynthesis	1.86E-04
19	GO:0006869: lipid transport	2.44E-04
20	GO:0009773: photosynthetic electron transport in photosystem I	2.75E-04
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.47E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.47E-04
23	GO:0006000: fructose metabolic process	5.68E-04
24	GO:0006013: mannose metabolic process	5.68E-04
25	GO:0009062: fatty acid catabolic process	5.68E-04
26	GO:0010253: UDP-rhamnose biosynthetic process	5.68E-04
27	GO:0090506: axillary shoot meristem initiation	5.68E-04
28	GO:0006412: translation	7.89E-04
29	GO:0007231: osmosensory signaling pathway	8.13E-04
30	GO:0042335: cuticle development	1.02E-03
31	GO:0009765: photosynthesis, light harvesting	1.08E-03
32	GO:0045727: positive regulation of translation	1.08E-03
33	GO:0033500: carbohydrate homeostasis	1.08E-03
34	GO:0045454: cell redox homeostasis	1.17E-03
35	GO:0048359: mucilage metabolic process involved in seed coat development	1.36E-03
36	GO:0016120: carotene biosynthetic process	1.36E-03
37	GO:0006564: L-serine biosynthetic process	1.36E-03
38	GO:0010236: plastoquinone biosynthetic process	1.36E-03
39	GO:0016123: xanthophyll biosynthetic process	1.36E-03
40	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.67E-03
41	GO:0010405: arabinogalactan protein metabolic process	1.67E-03
42	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.67E-03
43	GO:0010067: procambium histogenesis	2.01E-03
44	GO:0010189: vitamin E biosynthetic process	2.01E-03
45	GO:0010019: chloroplast-nucleus signaling pathway	2.01E-03
46	GO:0015995: chlorophyll biosynthetic process	2.26E-03
47	GO:0009817: defense response to fungus, incompatible interaction	2.49E-03
48	GO:0018298: protein-chromophore linkage	2.49E-03
49	GO:0070413: trehalose metabolism in response to stress	2.73E-03
50	GO:0030091: protein repair	2.73E-03
51	GO:0055114: oxidation-reduction process	3.02E-03
52	GO:0006002: fructose 6-phosphate metabolic process	3.12E-03
53	GO:0034599: cellular response to oxidative stress	3.29E-03
54	GO:0009735: response to cytokinin	3.36E-03
55	GO:0034765: regulation of ion transmembrane transport	3.53E-03
56	GO:0015780: nucleotide-sugar transport	3.53E-03
57	GO:0006839: mitochondrial transport	3.59E-03
58	GO:0008643: carbohydrate transport	4.38E-03
59	GO:0010192: mucilage biosynthetic process	4.40E-03
60	GO:0006816: calcium ion transport	4.86E-03
61	GO:0006415: translational termination	4.86E-03
62	GO:0043085: positive regulation of catalytic activity	4.86E-03
63	GO:0018119: peptidyl-cysteine S-nitrosylation	4.86E-03
64	GO:0006820: anion transport	5.34E-03
65	GO:0006094: gluconeogenesis	5.83E-03
66	GO:0005986: sucrose biosynthetic process	5.83E-03
67	GO:0019253: reductive pentose-phosphate cycle	6.33E-03
68	GO:0010207: photosystem II assembly	6.33E-03
69	GO:0010223: secondary shoot formation	6.33E-03
70	GO:0005985: sucrose metabolic process	6.86E-03
71	GO:0070588: calcium ion transmembrane transport	6.86E-03
72	GO:0010025: wax biosynthetic process	7.40E-03
73	GO:0019762: glucosinolate catabolic process	7.40E-03
74	GO:0016042: lipid catabolic process	7.77E-03
75	GO:0000027: ribosomal large subunit assembly	7.95E-03
76	GO:0007010: cytoskeleton organization	7.95E-03
77	GO:0005992: trehalose biosynthetic process	7.95E-03
78	GO:0006418: tRNA aminoacylation for protein translation	8.51E-03
79	GO:0009768: photosynthesis, light harvesting in photosystem I	8.51E-03
80	GO:0016998: cell wall macromolecule catabolic process	9.10E-03
81	GO:0030245: cellulose catabolic process	9.69E-03
82	GO:0001944: vasculature development	1.03E-02
83	GO:0019722: calcium-mediated signaling	1.09E-02
84	GO:0010089: xylem development	1.09E-02
85	GO:0010214: seed coat development	1.09E-02
86	GO:0042744: hydrogen peroxide catabolic process	1.11E-02
87	GO:0042742: defense response to bacterium	1.12E-02
88	GO:0071555: cell wall organization	1.12E-02
89	GO:0009790: embryo development	1.14E-02
90	GO:0016117: carotenoid biosynthetic process	1.16E-02
91	GO:0042391: regulation of membrane potential	1.22E-02
92	GO:0000413: protein peptidyl-prolyl isomerization	1.22E-02
93	GO:0010087: phloem or xylem histogenesis	1.22E-02
94	GO:0006662: glycerol ether metabolic process	1.29E-02
95	GO:0010182: sugar mediated signaling pathway	1.29E-02
96	GO:0045490: pectin catabolic process	1.34E-02
97	GO:0002229: defense response to oomycetes	1.50E-02
98	GO:0000302: response to reactive oxygen species	1.50E-02
99	GO:0006635: fatty acid beta-oxidation	1.50E-02
100	GO:0007264: small GTPase mediated signal transduction	1.57E-02
101	GO:0071805: potassium ion transmembrane transport	1.79E-02
102	GO:0007267: cell-cell signaling	1.79E-02
103	GO:0009627: systemic acquired resistance	2.10E-02
104	GO:0010411: xyloglucan metabolic process	2.18E-02
105	GO:0048481: plant ovule development	2.34E-02
106	GO:0009832: plant-type cell wall biogenesis	2.43E-02
107	GO:0000160: phosphorelay signal transduction system	2.43E-02
108	GO:0009834: plant-type secondary cell wall biogenesis	2.51E-02
109	GO:0009407: toxin catabolic process	2.51E-02
110	GO:0010218: response to far red light	2.51E-02
111	GO:0080167: response to karrikin	2.59E-02
112	GO:0009631: cold acclimation	2.60E-02
113	GO:0009637: response to blue light	2.78E-02
114	GO:0010114: response to red light	3.32E-02
115	GO:0042546: cell wall biogenesis	3.42E-02
116	GO:0009636: response to toxic substance	3.61E-02
117	GO:0032259: methylation	3.65E-02
118	GO:0009809: lignin biosynthetic process	4.11E-02
119	GO:0006364: rRNA processing	4.11E-02
120	GO:0009736: cytokinin-activated signaling pathway	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0019843: rRNA binding	1.07E-09
9	GO:0051920: peroxiredoxin activity	5.78E-07
10	GO:0016209: antioxidant activity	1.45E-06
11	GO:0004601: peroxidase activity	9.08E-05
12	GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity	1.52E-04
13	GO:0005080: protein kinase C binding	1.52E-04
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.52E-04
15	GO:0008809: carnitine racemase activity	1.52E-04
16	GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	1.52E-04
17	GO:0003735: structural constituent of ribosome	2.20E-04
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.47E-04
19	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.47E-04
20	GO:0016630: protochlorophyllide reductase activity	3.47E-04
21	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.47E-04
22	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.47E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	3.47E-04
24	GO:0010280: UDP-L-rhamnose synthase activity	3.47E-04
25	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.47E-04
26	GO:0008266: poly(U) RNA binding	4.07E-04
27	GO:0008289: lipid binding	5.58E-04
28	GO:0002161: aminoacyl-tRNA editing activity	5.68E-04
29	GO:0016149: translation release factor activity, codon specific	8.13E-04
30	GO:0043023: ribosomal large subunit binding	8.13E-04
31	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.13E-04
32	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	8.13E-04
33	GO:0043495: protein anchor	1.08E-03
34	GO:0004659: prenyltransferase activity	1.08E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.36E-03
36	GO:0003959: NADPH dehydrogenase activity	1.36E-03
37	GO:0008381: mechanically-gated ion channel activity	1.36E-03
38	GO:0004130: cytochrome-c peroxidase activity	1.67E-03
39	GO:0016688: L-ascorbate peroxidase activity	1.67E-03
40	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.67E-03
41	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.01E-03
42	GO:0004559: alpha-mannosidase activity	2.01E-03
43	GO:0005242: inward rectifier potassium channel activity	2.01E-03
44	GO:0016168: chlorophyll binding	2.03E-03
45	GO:0019899: enzyme binding	2.36E-03
46	GO:0004033: aldo-keto reductase (NADP) activity	2.73E-03
47	GO:0052747: sinapyl alcohol dehydrogenase activity	2.73E-03
48	GO:0003824: catalytic activity	3.46E-03
49	GO:0003747: translation release factor activity	3.53E-03
50	GO:0016788: hydrolase activity, acting on ester bonds	3.83E-03
51	GO:0030234: enzyme regulator activity	4.40E-03
52	GO:0008047: enzyme activator activity	4.40E-03
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.72E-03
54	GO:0000049: tRNA binding	5.34E-03
55	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.34E-03
56	GO:0052689: carboxylic ester hydrolase activity	5.58E-03
57	GO:0004672: protein kinase activity	5.76E-03
58	GO:0004565: beta-galactosidase activity	5.83E-03
59	GO:0031072: heat shock protein binding	5.83E-03
60	GO:0005262: calcium channel activity	5.83E-03
61	GO:0030599: pectinesterase activity	7.31E-03
62	GO:0031409: pigment binding	7.40E-03
63	GO:0004857: enzyme inhibitor activity	7.95E-03
64	GO:0009055: electron carrier activity	8.81E-03
65	GO:0033612: receptor serine/threonine kinase binding	9.10E-03
66	GO:0030570: pectate lyase activity	1.03E-02
67	GO:0008810: cellulase activity	1.03E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	1.03E-02
69	GO:0008514: organic anion transmembrane transporter activity	1.09E-02
70	GO:0047134: protein-disulfide reductase activity	1.16E-02
71	GO:0004812: aminoacyl-tRNA ligase activity	1.16E-02
72	GO:0005102: receptor binding	1.16E-02
73	GO:0030551: cyclic nucleotide binding	1.22E-02
74	GO:0005249: voltage-gated potassium channel activity	1.22E-02
75	GO:0050662: coenzyme binding	1.36E-02
76	GO:0004791: thioredoxin-disulfide reductase activity	1.36E-02
77	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.50E-02
78	GO:0000156: phosphorelay response regulator activity	1.64E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.64E-02
80	GO:0004674: protein serine/threonine kinase activity	1.69E-02
81	GO:0016791: phosphatase activity	1.71E-02
82	GO:0016759: cellulose synthase activity	1.71E-02
83	GO:0042802: identical protein binding	1.71E-02
84	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.79E-02
85	GO:0016597: amino acid binding	1.86E-02
86	GO:0008168: methyltransferase activity	2.01E-02
87	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.18E-02
88	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.26E-02
89	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.37E-02
90	GO:0030246: carbohydrate binding	2.43E-02
91	GO:0030145: manganese ion binding	2.60E-02
92	GO:0004364: glutathione transferase activity	3.23E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	3.52E-02
94	GO:0051287: NAD binding	3.81E-02
95	GO:0045330: aspartyl esterase activity	4.42E-02
96	GO:0045735: nutrient reservoir activity	4.63E-02
97	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.73E-02
98	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.95E-02
99	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	2.59E-16
3	GO:0048046: apoplast	2.68E-14
4	GO:0009941: chloroplast envelope	3.00E-12
5	GO:0009534: chloroplast thylakoid	6.73E-12
6	GO:0009570: chloroplast stroma	4.28E-10
7	GO:0009535: chloroplast thylakoid membrane	2.01E-08
8	GO:0009505: plant-type cell wall	9.64E-07
9	GO:0005618: cell wall	2.11E-05
10	GO:0009579: thylakoid	3.99E-05
11	GO:0009536: plastid	5.37E-05
12	GO:0046658: anchored component of plasma membrane	6.47E-05
13	GO:0009547: plastid ribosome	1.52E-04
14	GO:0005840: ribosome	1.89E-04
15	GO:0031225: anchored component of membrane	4.42E-04
16	GO:0010287: plastoglobule	1.34E-03
17	GO:0010319: stromule	1.71E-03
18	GO:0009533: chloroplast stromal thylakoid	2.36E-03
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.53E-03
20	GO:0031969: chloroplast membrane	4.91E-03
21	GO:0000311: plastid large ribosomal subunit	5.34E-03
22	GO:0005578: proteinaceous extracellular matrix	5.83E-03
23	GO:0000312: plastid small ribosomal subunit	6.33E-03
24	GO:0030076: light-harvesting complex	6.86E-03
25	GO:0005875: microtubule associated complex	7.40E-03
26	GO:0009706: chloroplast inner membrane	7.76E-03
27	GO:0042651: thylakoid membrane	8.51E-03
28	GO:0009543: chloroplast thylakoid lumen	9.73E-03
29	GO:0005576: extracellular region	1.20E-02
30	GO:0009522: photosystem I	1.36E-02
31	GO:0009523: photosystem II	1.42E-02
32	GO:0022626: cytosolic ribosome	1.58E-02
33	GO:0005886: plasma membrane	1.68E-02
34	GO:0016020: membrane	1.71E-02
35	GO:0009506: plasmodesma	2.04E-02
36	GO:0016021: integral component of membrane	2.57E-02
37	GO:0015934: large ribosomal subunit	2.60E-02
38	GO:0031977: thylakoid lumen	3.14E-02
39	GO:0005743: mitochondrial inner membrane	3.55E-02