Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55320

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
2GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
3GO:0060560: developmental growth involved in morphogenesis0.00E+00
4GO:0006848: pyruvate transport0.00E+00
5GO:0016197: endosomal transport3.88E-05
6GO:0035542: regulation of SNARE complex assembly3.88E-05
7GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process6.95E-05
8GO:0009663: plasmodesma organization6.95E-05
9GO:0080119: ER body organization1.05E-04
10GO:1901000: regulation of response to salt stress1.05E-04
11GO:1990937: xylan acetylation1.45E-04
12GO:0007029: endoplasmic reticulum organization1.88E-04
13GO:0032876: negative regulation of DNA endoreduplication1.88E-04
14GO:0045491: xylan metabolic process2.34E-04
15GO:0048232: male gamete generation2.34E-04
16GO:0010078: maintenance of root meristem identity3.84E-04
17GO:0071482: cellular response to light stimulus4.37E-04
18GO:0010345: suberin biosynthetic process4.93E-04
19GO:0006298: mismatch repair6.08E-04
20GO:0010215: cellulose microfibril organization6.08E-04
21GO:0008361: regulation of cell size7.29E-04
22GO:0010143: cutin biosynthetic process8.55E-04
23GO:0007033: vacuole organization9.19E-04
24GO:0007030: Golgi organization9.19E-04
25GO:0010025: wax biosynthetic process9.85E-04
26GO:0042023: DNA endoreduplication9.85E-04
27GO:0006289: nucleotide-excision repair1.05E-03
28GO:0008299: isoprenoid biosynthetic process1.12E-03
29GO:0030433: ubiquitin-dependent ERAD pathway1.26E-03
30GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.34E-03
31GO:0010091: trichome branching1.41E-03
32GO:0045492: xylan biosynthetic process1.41E-03
33GO:0042335: cuticle development1.57E-03
34GO:0006886: intracellular protein transport1.58E-03
35GO:0006814: sodium ion transport1.73E-03
36GO:0009749: response to glucose1.81E-03
37GO:0051607: defense response to virus2.33E-03
38GO:0016579: protein deubiquitination2.33E-03
39GO:0006888: ER to Golgi vesicle-mediated transport2.70E-03
40GO:0016049: cell growth2.80E-03
41GO:0030244: cellulose biosynthetic process2.90E-03
42GO:0009834: plant-type secondary cell wall biogenesis3.09E-03
43GO:0008283: cell proliferation4.04E-03
44GO:0006417: regulation of translation5.31E-03
45GO:0048367: shoot system development5.68E-03
46GO:0009742: brassinosteroid mediated signaling pathway6.57E-03
47GO:0006413: translational initiation8.79E-03
48GO:0040008: regulation of growth8.93E-03
49GO:0009826: unidimensional cell growth1.22E-02
50GO:0007049: cell cycle1.36E-02
51GO:0007165: signal transduction1.39E-02
52GO:0048366: leaf development1.41E-02
53GO:0009737: response to abscisic acid1.42E-02
54GO:0048364: root development1.99E-02
55GO:0009651: response to salt stress2.25E-02
56GO:0009908: flower development2.70E-02
57GO:0009738: abscisic acid-activated signaling pathway2.83E-02
58GO:0009416: response to light stimulus2.90E-02
59GO:0051301: cell division3.08E-02
60GO:0006511: ubiquitin-dependent protein catabolic process3.61E-02
61GO:0009414: response to water deprivation4.71E-02
62GO:0042742: defense response to bacterium4.79E-02
RankGO TermAdjusted P value
1GO:0050833: pyruvate transmembrane transporter activity6.95E-05
2GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway1.45E-04
3GO:0003730: mRNA 3'-UTR binding2.82E-04
4GO:0015386: potassium:proton antiporter activity6.67E-04
5GO:0019888: protein phosphatase regulator activity7.91E-04
6GO:0019706: protein-cysteine S-palmitoyltransferase activity1.19E-03
7GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.19E-03
8GO:0004843: thiol-dependent ubiquitin-specific protease activity1.89E-03
9GO:0015385: sodium:proton antiporter activity2.07E-03
10GO:0003684: damaged DNA binding2.15E-03
11GO:0003697: single-stranded DNA binding3.40E-03
12GO:0004712: protein serine/threonine/tyrosine kinase activity3.61E-03
13GO:0016874: ligase activity6.05E-03
14GO:0003779: actin binding6.18E-03
15GO:0015297: antiporter activity8.93E-03
16GO:0004842: ubiquitin-protein transferase activity9.21E-03
17GO:0003729: mRNA binding9.92E-03
18GO:0003743: translation initiation factor activity1.03E-02
19GO:0016757: transferase activity, transferring glycosyl groups2.28E-02
20GO:0000166: nucleotide binding2.90E-02
21GO:0016740: transferase activity3.34E-02
22GO:0005525: GTP binding4.14E-02
RankGO TermAdjusted P value
1GO:0071942: XPC complex0.00E+00
2GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
3GO:0030897: HOPS complex3.88E-05
4GO:0000139: Golgi membrane1.59E-04
5GO:0005851: eukaryotic translation initiation factor 2B complex2.34E-04
6GO:0030127: COPII vesicle coat2.34E-04
7GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.32E-04
8GO:0000159: protein phosphatase type 2A complex6.67E-04
9GO:0005765: lysosomal membrane6.67E-04
10GO:0005768: endosome7.72E-04
11GO:0030176: integral component of endoplasmic reticulum membrane9.19E-04
12GO:0043234: protein complex9.85E-04
13GO:0005794: Golgi apparatus2.02E-03
14GO:0031902: late endosome membrane3.82E-03
15GO:0005802: trans-Golgi network5.27E-03
16GO:0009543: chloroplast thylakoid lumen7.37E-03
17GO:0009705: plant-type vacuole membrane9.23E-03
18GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.34E-02
19GO:0031969: chloroplast membrane1.46E-02
20GO:0005777: peroxisome3.20E-02
Gene type



Gene DE type