co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0042726: flavin-containing compound metabolic process	0.00E+00
3	GO:0065002: intracellular protein transmembrane transport	1.67E-05
4	GO:0019646: aerobic electron transport chain	1.67E-05
5	GO:0043953: protein transport by the Tat complex	1.67E-05
6	GO:0010207: photosystem II assembly	1.68E-05
7	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.35E-05
8	GO:0035304: regulation of protein dephosphorylation	4.35E-05
9	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.59E-04
10	GO:0042549: photosystem II stabilization	2.59E-04
11	GO:0042372: phylloquinone biosynthetic process	3.11E-04
12	GO:0071482: cellular response to light stimulus	4.82E-04
13	GO:0015996: chlorophyll catabolic process	4.82E-04
14	GO:0009657: plastid organization	4.82E-04
15	GO:0010206: photosystem II repair	5.42E-04
16	GO:0010205: photoinhibition	6.04E-04
17	GO:1903507: negative regulation of nucleic acid-templated transcription	7.34E-04
18	GO:0019684: photosynthesis, light reaction	7.34E-04
19	GO:0007166: cell surface receptor signaling pathway	9.12E-04
20	GO:0006636: unsaturated fatty acid biosynthetic process	1.08E-03
21	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.39E-03
22	GO:0015979: photosynthesis	1.70E-03
23	GO:0000413: protein peptidyl-prolyl isomerization	1.73E-03
24	GO:0016032: viral process	2.18E-03
25	GO:0009567: double fertilization forming a zygote and endosperm	2.38E-03
26	GO:0008152: metabolic process	2.40E-03
27	GO:0051607: defense response to virus	2.57E-03
28	GO:0010027: thylakoid membrane organization	2.68E-03
29	GO:0015995: chlorophyll biosynthetic process	2.99E-03
30	GO:0009631: cold acclimation	3.53E-03
31	GO:0010114: response to red light	4.47E-03
32	GO:0031347: regulation of defense response	5.09E-03
33	GO:0006364: rRNA processing	5.48E-03
34	GO:0006417: regulation of translation	5.88E-03
35	GO:0006396: RNA processing	7.13E-03
36	GO:0006633: fatty acid biosynthetic process	9.58E-03
37	GO:0042254: ribosome biogenesis	1.41E-02
38	GO:0044550: secondary metabolite biosynthetic process	1.72E-02
39	GO:0032259: methylation	2.07E-02
40	GO:0006397: mRNA processing	2.21E-02
41	GO:0009416: response to light stimulus	3.22E-02
42	GO:0009611: response to wounding	3.27E-02
43	GO:0006457: protein folding	3.87E-02

Rank	GO Term	Adjusted P value
1	GO:0047884: FAD diphosphatase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0034256: chlorophyll(ide) b reductase activity	1.67E-05
4	GO:0010242: oxygen evolving activity	1.67E-05
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.35E-05
6	GO:0004312: fatty acid synthase activity	4.35E-05
7	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.77E-05
8	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.77E-05
9	GO:0047631: ADP-ribose diphosphatase activity	2.09E-04
10	GO:0016846: carbon-sulfur lyase activity	2.09E-04
11	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.52E-04
12	GO:0031072: heat shock protein binding	8.70E-04
13	GO:0008266: poly(U) RNA binding	9.39E-04
14	GO:0003954: NADH dehydrogenase activity	1.16E-03
15	GO:0003714: transcription corepressor activity	1.16E-03
16	GO:0043424: protein histidine kinase binding	1.23E-03
17	GO:0003727: single-stranded RNA binding	1.56E-03
18	GO:0003756: protein disulfide isomerase activity	1.56E-03
19	GO:0016787: hydrolase activity	2.74E-03
20	GO:0016168: chlorophyll binding	2.78E-03
21	GO:0003746: translation elongation factor activity	3.76E-03
22	GO:0043621: protein self-association	4.71E-03
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.96E-03
24	GO:0051082: unfolded protein binding	6.99E-03
25	GO:0005509: calcium ion binding	7.13E-03
26	GO:0016491: oxidoreductase activity	1.02E-02
27	GO:0003743: translation initiation factor activity	1.14E-02
28	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.95E-02
29	GO:0019825: oxygen binding	4.14E-02
30	GO:0005525: GTP binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	5.45E-13
3	GO:0009507: chloroplast	2.35E-10
4	GO:0009535: chloroplast thylakoid membrane	1.78E-07
5	GO:0031977: thylakoid lumen	5.55E-06
6	GO:0009570: chloroplast stroma	6.64E-06
7	GO:0031361: integral component of thylakoid membrane	1.67E-05
8	GO:0009543: chloroplast thylakoid lumen	2.74E-05
9	GO:0009654: photosystem II oxygen evolving complex	2.85E-05
10	GO:0031304: intrinsic component of mitochondrial inner membrane	4.35E-05
11	GO:0009579: thylakoid	4.72E-05
12	GO:0019898: extrinsic component of membrane	6.79E-05
13	GO:0033281: TAT protein transport complex	7.77E-05
14	GO:0009941: chloroplast envelope	2.47E-04
15	GO:0009533: chloroplast stromal thylakoid	3.66E-04
16	GO:0010287: plastoglobule	5.62E-04
17	GO:0030095: chloroplast photosystem II	9.39E-04
18	GO:0031969: chloroplast membrane	1.49E-03
19	GO:0009522: photosystem I	1.91E-03
20	GO:0009706: chloroplast inner membrane	6.99E-03
21	GO:0009536: plastid	9.49E-03
22	GO:0005743: mitochondrial inner membrane	2.03E-02