GO Enrichment Analysis of Co-expressed Genes with
AT3G55120
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:1901038: cyanidin 3-O-glucoside metabolic process | 0.00E+00 |
| 4 | GO:0010423: negative regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 5 | GO:0009264: deoxyribonucleotide catabolic process | 0.00E+00 |
| 6 | GO:0015822: ornithine transport | 0.00E+00 |
| 7 | GO:0080167: response to karrikin | 3.52E-08 |
| 8 | GO:0051555: flavonol biosynthetic process | 4.33E-08 |
| 9 | GO:0009813: flavonoid biosynthetic process | 3.82E-07 |
| 10 | GO:0071555: cell wall organization | 2.14E-06 |
| 11 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.42E-06 |
| 12 | GO:0006559: L-phenylalanine catabolic process | 3.90E-05 |
| 13 | GO:0010224: response to UV-B | 5.93E-05 |
| 14 | GO:0045489: pectin biosynthetic process | 6.23E-05 |
| 15 | GO:0046244: salicylic acid catabolic process | 1.40E-04 |
| 16 | GO:0006659: phosphatidylserine biosynthetic process | 1.40E-04 |
| 17 | GO:0048438: floral whorl development | 1.40E-04 |
| 18 | GO:0000066: mitochondrial ornithine transport | 1.40E-04 |
| 19 | GO:0000272: polysaccharide catabolic process | 2.44E-04 |
| 20 | GO:0009698: phenylpropanoid metabolic process | 2.44E-04 |
| 21 | GO:0010218: response to far red light | 2.46E-04 |
| 22 | GO:0009629: response to gravity | 3.20E-04 |
| 23 | GO:0019388: galactose catabolic process | 3.20E-04 |
| 24 | GO:0007154: cell communication | 3.20E-04 |
| 25 | GO:0010220: positive regulation of vernalization response | 3.20E-04 |
| 26 | GO:0080183: response to photooxidative stress | 3.20E-04 |
| 27 | GO:1900386: positive regulation of flavonol biosynthetic process | 3.20E-04 |
| 28 | GO:0071395: cellular response to jasmonic acid stimulus | 3.20E-04 |
| 29 | GO:0010114: response to red light | 4.14E-04 |
| 30 | GO:0009926: auxin polar transport | 4.14E-04 |
| 31 | GO:1901562: response to paraquat | 5.26E-04 |
| 32 | GO:0010253: UDP-rhamnose biosynthetic process | 5.26E-04 |
| 33 | GO:0046417: chorismate metabolic process | 5.26E-04 |
| 34 | GO:0040009: regulation of growth rate | 5.26E-04 |
| 35 | GO:0006651: diacylglycerol biosynthetic process | 5.26E-04 |
| 36 | GO:0009611: response to wounding | 7.24E-04 |
| 37 | GO:0009963: positive regulation of flavonoid biosynthetic process | 7.53E-04 |
| 38 | GO:0042823: pyridoxal phosphate biosynthetic process | 7.53E-04 |
| 39 | GO:0009800: cinnamic acid biosynthetic process | 7.53E-04 |
| 40 | GO:0009590: detection of gravity | 7.53E-04 |
| 41 | GO:0016117: carotenoid biosynthetic process | 8.45E-04 |
| 42 | GO:0000271: polysaccharide biosynthetic process | 9.10E-04 |
| 43 | GO:0006021: inositol biosynthetic process | 9.98E-04 |
| 44 | GO:0034613: cellular protein localization | 9.98E-04 |
| 45 | GO:0009694: jasmonic acid metabolic process | 9.98E-04 |
| 46 | GO:0009765: photosynthesis, light harvesting | 9.98E-04 |
| 47 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.20E-03 |
| 48 | GO:0016120: carotene biosynthetic process | 1.26E-03 |
| 49 | GO:0071368: cellular response to cytokinin stimulus | 1.26E-03 |
| 50 | GO:0009435: NAD biosynthetic process | 1.26E-03 |
| 51 | GO:0010315: auxin efflux | 1.55E-03 |
| 52 | GO:0000060: protein import into nucleus, translocation | 1.55E-03 |
| 53 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.55E-03 |
| 54 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.55E-03 |
| 55 | GO:0042732: D-xylose metabolic process | 1.55E-03 |
| 56 | GO:0010076: maintenance of floral meristem identity | 1.86E-03 |
| 57 | GO:0017148: negative regulation of translation | 1.86E-03 |
| 58 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.86E-03 |
| 59 | GO:0010077: maintenance of inflorescence meristem identity | 1.86E-03 |
| 60 | GO:0009739: response to gibberellin | 2.14E-03 |
| 61 | GO:0098869: cellular oxidant detoxification | 2.18E-03 |
| 62 | GO:0009819: drought recovery | 2.52E-03 |
| 63 | GO:0031540: regulation of anthocyanin biosynthetic process | 2.52E-03 |
| 64 | GO:0005978: glycogen biosynthetic process | 2.52E-03 |
| 65 | GO:0030154: cell differentiation | 2.77E-03 |
| 66 | GO:0016051: carbohydrate biosynthetic process | 2.81E-03 |
| 67 | GO:0009699: phenylpropanoid biosynthetic process | 2.88E-03 |
| 68 | GO:0022900: electron transport chain | 2.88E-03 |
| 69 | GO:0015996: chlorophyll catabolic process | 2.88E-03 |
| 70 | GO:0009056: catabolic process | 3.26E-03 |
| 71 | GO:0009638: phototropism | 3.65E-03 |
| 72 | GO:0042546: cell wall biogenesis | 3.75E-03 |
| 73 | GO:0010192: mucilage biosynthetic process | 4.06E-03 |
| 74 | GO:0009073: aromatic amino acid family biosynthetic process | 4.48E-03 |
| 75 | GO:0048229: gametophyte development | 4.48E-03 |
| 76 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.92E-03 |
| 77 | GO:0010582: floral meristem determinacy | 4.92E-03 |
| 78 | GO:0016925: protein sumoylation | 4.92E-03 |
| 79 | GO:0006006: glucose metabolic process | 5.37E-03 |
| 80 | GO:0009909: regulation of flower development | 5.37E-03 |
| 81 | GO:0046274: lignin catabolic process | 5.37E-03 |
| 82 | GO:0010223: secondary shoot formation | 5.84E-03 |
| 83 | GO:0009934: regulation of meristem structural organization | 5.84E-03 |
| 84 | GO:0048768: root hair cell tip growth | 5.84E-03 |
| 85 | GO:0010143: cutin biosynthetic process | 5.84E-03 |
| 86 | GO:0009225: nucleotide-sugar metabolic process | 6.32E-03 |
| 87 | GO:0009833: plant-type primary cell wall biogenesis | 6.81E-03 |
| 88 | GO:0006487: protein N-linked glycosylation | 7.32E-03 |
| 89 | GO:0009695: jasmonic acid biosynthetic process | 7.84E-03 |
| 90 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.84E-03 |
| 91 | GO:0019953: sexual reproduction | 7.84E-03 |
| 92 | GO:0008152: metabolic process | 7.85E-03 |
| 93 | GO:0031408: oxylipin biosynthetic process | 8.38E-03 |
| 94 | GO:0010017: red or far-red light signaling pathway | 8.92E-03 |
| 95 | GO:0009411: response to UV | 9.48E-03 |
| 96 | GO:0019722: calcium-mediated signaling | 1.01E-02 |
| 97 | GO:0042127: regulation of cell proliferation | 1.01E-02 |
| 98 | GO:0010584: pollen exine formation | 1.01E-02 |
| 99 | GO:0009733: response to auxin | 1.12E-02 |
| 100 | GO:0015991: ATP hydrolysis coupled proton transport | 1.12E-02 |
| 101 | GO:0048653: anther development | 1.12E-02 |
| 102 | GO:0009958: positive gravitropism | 1.18E-02 |
| 103 | GO:0006520: cellular amino acid metabolic process | 1.18E-02 |
| 104 | GO:0015986: ATP synthesis coupled proton transport | 1.25E-02 |
| 105 | GO:0009791: post-embryonic development | 1.31E-02 |
| 106 | GO:0019252: starch biosynthetic process | 1.31E-02 |
| 107 | GO:0008654: phospholipid biosynthetic process | 1.31E-02 |
| 108 | GO:0071554: cell wall organization or biogenesis | 1.37E-02 |
| 109 | GO:0010583: response to cyclopentenone | 1.44E-02 |
| 110 | GO:1901657: glycosyl compound metabolic process | 1.51E-02 |
| 111 | GO:0010252: auxin homeostasis | 1.58E-02 |
| 112 | GO:0009828: plant-type cell wall loosening | 1.58E-02 |
| 113 | GO:0007267: cell-cell signaling | 1.64E-02 |
| 114 | GO:0005975: carbohydrate metabolic process | 1.76E-02 |
| 115 | GO:0009911: positive regulation of flower development | 1.79E-02 |
| 116 | GO:0048573: photoperiodism, flowering | 2.00E-02 |
| 117 | GO:0016311: dephosphorylation | 2.08E-02 |
| 118 | GO:0009723: response to ethylene | 2.14E-02 |
| 119 | GO:0030244: cellulose biosynthetic process | 2.16E-02 |
| 120 | GO:0018298: protein-chromophore linkage | 2.16E-02 |
| 121 | GO:0010311: lateral root formation | 2.23E-02 |
| 122 | GO:0009832: plant-type cell wall biogenesis | 2.23E-02 |
| 123 | GO:0055114: oxidation-reduction process | 2.27E-02 |
| 124 | GO:0010119: regulation of stomatal movement | 2.39E-02 |
| 125 | GO:0007568: aging | 2.39E-02 |
| 126 | GO:0009867: jasmonic acid mediated signaling pathway | 2.55E-02 |
| 127 | GO:0009637: response to blue light | 2.55E-02 |
| 128 | GO:0006839: mitochondrial transport | 2.80E-02 |
| 129 | GO:0008643: carbohydrate transport | 3.23E-02 |
| 130 | GO:0032259: methylation | 3.25E-02 |
| 131 | GO:0000165: MAPK cascade | 3.50E-02 |
| 132 | GO:0031347: regulation of defense response | 3.50E-02 |
| 133 | GO:0009753: response to jasmonic acid | 3.64E-02 |
| 134 | GO:0009809: lignin biosynthetic process | 3.78E-02 |
| 135 | GO:0009585: red, far-red light phototransduction | 3.78E-02 |
| 136 | GO:0006096: glycolytic process | 4.26E-02 |
| 137 | GO:0016569: covalent chromatin modification | 4.65E-02 |
| 138 | GO:0042545: cell wall modification | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 2 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 3 | GO:0045552: dihydrokaempferol 4-reductase activity | 0.00E+00 |
| 4 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 5 | GO:0047213: anthocyanidin 3-O-glucosyltransferase activity | 0.00E+00 |
| 6 | GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity | 0.00E+00 |
| 7 | GO:0030795: jasmonate O-methyltransferase activity | 0.00E+00 |
| 8 | GO:0102078: methyl jasmonate methylesterase activity | 0.00E+00 |
| 9 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 10 | GO:0047890: flavanone 4-reductase activity | 0.00E+00 |
| 11 | GO:0045486: naringenin 3-dioxygenase activity | 0.00E+00 |
| 12 | GO:1990055: phenylacetaldehyde synthase activity | 0.00E+00 |
| 13 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 14 | GO:0044318: L-aspartate:fumarate oxidoreductase activity | 0.00E+00 |
| 15 | GO:0008734: L-aspartate oxidase activity | 0.00E+00 |
| 16 | GO:0016757: transferase activity, transferring glycosyl groups | 1.10E-07 |
| 17 | GO:0016161: beta-amylase activity | 5.48E-05 |
| 18 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 9.04E-05 |
| 19 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 9.04E-05 |
| 20 | GO:0010313: phytochrome binding | 1.40E-04 |
| 21 | GO:0004837: tyrosine decarboxylase activity | 1.40E-04 |
| 22 | GO:0000064: L-ornithine transmembrane transporter activity | 3.20E-04 |
| 23 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 3.20E-04 |
| 24 | GO:0004512: inositol-3-phosphate synthase activity | 3.20E-04 |
| 25 | GO:0048531: beta-1,3-galactosyltransferase activity | 3.20E-04 |
| 26 | GO:0004106: chorismate mutase activity | 3.20E-04 |
| 27 | GO:0004614: phosphoglucomutase activity | 3.20E-04 |
| 28 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.20E-04 |
| 29 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 3.20E-04 |
| 30 | GO:0010280: UDP-L-rhamnose synthase activity | 3.20E-04 |
| 31 | GO:0008194: UDP-glycosyltransferase activity | 3.27E-04 |
| 32 | GO:0031418: L-ascorbic acid binding | 5.03E-04 |
| 33 | GO:0045548: phenylalanine ammonia-lyase activity | 5.26E-04 |
| 34 | GO:0008253: 5'-nucleotidase activity | 5.26E-04 |
| 35 | GO:0033897: ribonuclease T2 activity | 5.26E-04 |
| 36 | GO:0046982: protein heterodimerization activity | 5.27E-04 |
| 37 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 6.63E-04 |
| 38 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 7.53E-04 |
| 39 | GO:0048027: mRNA 5'-UTR binding | 7.53E-04 |
| 40 | GO:0098599: palmitoyl hydrolase activity | 9.98E-04 |
| 41 | GO:0045430: chalcone isomerase activity | 9.98E-04 |
| 42 | GO:0046527: glucosyltransferase activity | 9.98E-04 |
| 43 | GO:0080032: methyl jasmonate esterase activity | 9.98E-04 |
| 44 | GO:0016758: transferase activity, transferring hexosyl groups | 1.20E-03 |
| 45 | GO:0031386: protein tag | 1.26E-03 |
| 46 | GO:0045431: flavonol synthase activity | 1.26E-03 |
| 47 | GO:0016759: cellulose synthase activity | 1.44E-03 |
| 48 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.55E-03 |
| 49 | GO:0102229: amylopectin maltohydrolase activity | 1.55E-03 |
| 50 | GO:0035252: UDP-xylosyltransferase activity | 1.55E-03 |
| 51 | GO:0016688: L-ascorbate peroxidase activity | 1.55E-03 |
| 52 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.55E-03 |
| 53 | GO:0080030: methyl indole-3-acetate esterase activity | 1.55E-03 |
| 54 | GO:0008474: palmitoyl-(protein) hydrolase activity | 1.55E-03 |
| 55 | GO:0008429: phosphatidylethanolamine binding | 1.55E-03 |
| 56 | GO:0008195: phosphatidate phosphatase activity | 1.86E-03 |
| 57 | GO:0102425: myricetin 3-O-glucosyltransferase activity | 2.18E-03 |
| 58 | GO:0102360: daphnetin 3-O-glucosyltransferase activity | 2.18E-03 |
| 59 | GO:0016621: cinnamoyl-CoA reductase activity | 2.18E-03 |
| 60 | GO:0047893: flavonol 3-O-glucosyltransferase activity | 2.52E-03 |
| 61 | GO:0016207: 4-coumarate-CoA ligase activity | 3.26E-03 |
| 62 | GO:0009672: auxin:proton symporter activity | 3.65E-03 |
| 63 | GO:0030955: potassium ion binding | 3.65E-03 |
| 64 | GO:0004743: pyruvate kinase activity | 3.65E-03 |
| 65 | GO:0004860: protein kinase inhibitor activity | 4.48E-03 |
| 66 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 4.48E-03 |
| 67 | GO:0004521: endoribonuclease activity | 4.92E-03 |
| 68 | GO:0010329: auxin efflux transmembrane transporter activity | 5.37E-03 |
| 69 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.84E-03 |
| 70 | GO:0031409: pigment binding | 6.81E-03 |
| 71 | GO:0004540: ribonuclease activity | 8.38E-03 |
| 72 | GO:0004176: ATP-dependent peptidase activity | 8.38E-03 |
| 73 | GO:0035251: UDP-glucosyltransferase activity | 8.38E-03 |
| 74 | GO:0016760: cellulose synthase (UDP-forming) activity | 9.48E-03 |
| 75 | GO:0016887: ATPase activity | 1.21E-02 |
| 76 | GO:0050662: coenzyme binding | 1.25E-02 |
| 77 | GO:0016853: isomerase activity | 1.25E-02 |
| 78 | GO:0019901: protein kinase binding | 1.31E-02 |
| 79 | GO:0004518: nuclease activity | 1.44E-02 |
| 80 | GO:0043565: sequence-specific DNA binding | 1.45E-02 |
| 81 | GO:0016791: phosphatase activity | 1.58E-02 |
| 82 | GO:0008237: metallopeptidase activity | 1.64E-02 |
| 83 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.64E-02 |
| 84 | GO:0016413: O-acetyltransferase activity | 1.71E-02 |
| 85 | GO:0000287: magnesium ion binding | 1.82E-02 |
| 86 | GO:0016740: transferase activity | 1.85E-02 |
| 87 | GO:0016168: chlorophyll binding | 1.86E-02 |
| 88 | GO:0016788: hydrolase activity, acting on ester bonds | 1.89E-02 |
| 89 | GO:0008375: acetylglucosaminyltransferase activity | 1.93E-02 |
| 90 | GO:0030247: polysaccharide binding | 2.00E-02 |
| 91 | GO:0102483: scopolin beta-glucosidase activity | 2.00E-02 |
| 92 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.31E-02 |
| 93 | GO:0004222: metalloendopeptidase activity | 2.31E-02 |
| 94 | GO:0052689: carboxylic ester hydrolase activity | 2.54E-02 |
| 95 | GO:0008422: beta-glucosidase activity | 2.72E-02 |
| 96 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.23E-02 |
| 97 | GO:0009055: electron carrier activity | 3.64E-02 |
| 98 | GO:0003824: catalytic activity | 3.90E-02 |
| 99 | GO:0045330: aspartyl esterase activity | 4.06E-02 |
| 100 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.35E-02 |
| 101 | GO:0004650: polygalacturonase activity | 4.55E-02 |
| 102 | GO:0016874: ligase activity | 4.65E-02 |
| 103 | GO:0030599: pectinesterase activity | 4.65E-02 |
| 104 | GO:0016491: oxidoreductase activity | 4.87E-02 |
| 105 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 4.90E-02 |
| 106 | GO:0016746: transferase activity, transferring acyl groups | 4.95E-02 |
| 107 | GO:0015035: protein disulfide oxidoreductase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain | 3.20E-04 |
| 2 | GO:0009509: chromoplast | 5.26E-04 |
| 3 | GO:0042406: extrinsic component of endoplasmic reticulum membrane | 5.26E-04 |
| 4 | GO:0031225: anchored component of membrane | 1.51E-03 |
| 5 | GO:0043231: intracellular membrane-bounded organelle | 1.56E-03 |
| 6 | GO:0046658: anchored component of plasma membrane | 2.64E-03 |
| 7 | GO:0000139: Golgi membrane | 4.06E-03 |
| 8 | GO:0005794: Golgi apparatus | 5.58E-03 |
| 9 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 6.32E-03 |
| 10 | GO:0030076: light-harvesting complex | 6.32E-03 |
| 11 | GO:0009507: chloroplast | 7.72E-03 |
| 12 | GO:0010287: plastoglobule | 8.18E-03 |
| 13 | GO:0009522: photosystem I | 1.25E-02 |
| 14 | GO:0009523: photosystem II | 1.31E-02 |
| 15 | GO:0009505: plant-type cell wall | 1.32E-02 |
| 16 | GO:0000785: chromatin | 1.44E-02 |
| 17 | GO:0071944: cell periphery | 1.51E-02 |
| 18 | GO:0010319: stromule | 1.64E-02 |
| 19 | GO:0000786: nucleosome | 2.47E-02 |
| 20 | GO:0005743: mitochondrial inner membrane | 3.16E-02 |
| 21 | GO:0009506: plasmodesma | 3.67E-02 |
| 22 | GO:0009536: plastid | 4.47E-02 |
| 23 | GO:0005737: cytoplasm | 4.69E-02 |