co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0072660: maintenance of protein location in plasma membrane	0.00E+00
3	GO:0006457: protein folding	9.56E-09
4	GO:0031349: positive regulation of defense response	3.31E-07
5	GO:0009651: response to salt stress	1.13E-06
6	GO:0009627: systemic acquired resistance	1.46E-06
7	GO:0010942: positive regulation of cell death	1.48E-05
8	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.12E-05
9	GO:0030163: protein catabolic process	3.10E-05
10	GO:0006605: protein targeting	3.81E-05
11	GO:0009408: response to heat	4.54E-05
12	GO:0009615: response to virus	4.54E-05
13	GO:0060862: negative regulation of floral organ abscission	7.75E-05
14	GO:0048448: stamen morphogenesis	7.75E-05
15	GO:0010450: inflorescence meristem growth	7.75E-05
16	GO:0051245: negative regulation of cellular defense response	7.75E-05
17	GO:0002221: pattern recognition receptor signaling pathway	1.85E-04
18	GO:0010618: aerenchyma formation	1.85E-04
19	GO:0048833: specification of floral organ number	1.85E-04
20	GO:0034976: response to endoplasmic reticulum stress	2.04E-04
21	GO:0046686: response to cadmium ion	2.74E-04
22	GO:0009626: plant-type hypersensitive response	2.93E-04
23	GO:0006886: intracellular protein transport	3.01E-04
24	GO:1900140: regulation of seedling development	3.11E-04
25	GO:0072661: protein targeting to plasma membrane	3.11E-04
26	GO:0055074: calcium ion homeostasis	3.11E-04
27	GO:0006612: protein targeting to membrane	4.49E-04
28	GO:0048194: Golgi vesicle budding	4.49E-04
29	GO:0010148: transpiration	4.49E-04
30	GO:0042823: pyridoxal phosphate biosynthetic process	4.49E-04
31	GO:0080142: regulation of salicylic acid biosynthetic process	5.98E-04
32	GO:0032502: developmental process	5.98E-04
33	GO:0060548: negative regulation of cell death	5.98E-04
34	GO:0045727: positive regulation of translation	5.98E-04
35	GO:1902584: positive regulation of response to water deprivation	5.98E-04
36	GO:0010363: regulation of plant-type hypersensitive response	5.98E-04
37	GO:0033356: UDP-L-arabinose metabolic process	5.98E-04
38	GO:0006468: protein phosphorylation	6.33E-04
39	GO:0000304: response to singlet oxygen	7.57E-04
40	GO:0046283: anthocyanin-containing compound metabolic process	7.57E-04
41	GO:0045927: positive regulation of growth	7.57E-04
42	GO:0010405: arabinogalactan protein metabolic process	9.24E-04
43	GO:0018258: protein O-linked glycosylation via hydroxyproline	9.24E-04
44	GO:0009409: response to cold	9.86E-04
45	GO:0010310: regulation of hydrogen peroxide metabolic process	1.10E-03
46	GO:0034389: lipid particle organization	1.10E-03
47	GO:1900056: negative regulation of leaf senescence	1.29E-03
48	GO:0080186: developmental vegetative growth	1.29E-03
49	GO:0071669: plant-type cell wall organization or biogenesis	1.29E-03
50	GO:0031540: regulation of anthocyanin biosynthetic process	1.48E-03
51	GO:0006102: isocitrate metabolic process	1.48E-03
52	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.48E-03
53	GO:0010204: defense response signaling pathway, resistance gene-independent	1.69E-03
54	GO:0009880: embryonic pattern specification	1.69E-03
55	GO:0046685: response to arsenic-containing substance	1.91E-03
56	GO:0010205: photoinhibition	2.14E-03
57	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.14E-03
58	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.14E-03
59	GO:0010224: response to UV-B	2.28E-03
60	GO:0043069: negative regulation of programmed cell death	2.37E-03
61	GO:0009073: aromatic amino acid family biosynthetic process	2.61E-03
62	GO:0042742: defense response to bacterium	2.76E-03
63	GO:0015706: nitrate transport	2.86E-03
64	GO:0010075: regulation of meristem growth	3.12E-03
65	GO:0009934: regulation of meristem structural organization	3.38E-03
66	GO:0006952: defense response	3.48E-03
67	GO:0070588: calcium ion transmembrane transport	3.66E-03
68	GO:0010167: response to nitrate	3.66E-03
69	GO:0000027: ribosomal large subunit assembly	4.23E-03
70	GO:0009863: salicylic acid mediated signaling pathway	4.23E-03
71	GO:0048278: vesicle docking	4.82E-03
72	GO:0031348: negative regulation of defense response	5.13E-03
73	GO:0009555: pollen development	5.19E-03
74	GO:0009306: protein secretion	5.77E-03
75	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.10E-03
76	GO:0006470: protein dephosphorylation	6.13E-03
77	GO:0007166: cell surface receptor signaling pathway	6.13E-03
78	GO:0061025: membrane fusion	7.13E-03
79	GO:0010183: pollen tube guidance	7.49E-03
80	GO:0006511: ubiquitin-dependent protein catabolic process	7.66E-03
81	GO:0006891: intra-Golgi vesicle-mediated transport	7.85E-03
82	GO:0010286: heat acclimation	9.36E-03
83	GO:0001666: response to hypoxia	1.02E-02
84	GO:0016126: sterol biosynthetic process	1.02E-02
85	GO:0042128: nitrate assimilation	1.10E-02
86	GO:0006906: vesicle fusion	1.10E-02
87	GO:0030244: cellulose biosynthetic process	1.22E-02
88	GO:0008219: cell death	1.22E-02
89	GO:0009832: plant-type cell wall biogenesis	1.27E-02
90	GO:0010119: regulation of stomatal movement	1.36E-02
91	GO:0009867: jasmonic acid mediated signaling pathway	1.45E-02
92	GO:0009853: photorespiration	1.45E-02
93	GO:0006099: tricarboxylic acid cycle	1.49E-02
94	GO:0006508: proteolysis	1.51E-02
95	GO:0006839: mitochondrial transport	1.59E-02
96	GO:0006887: exocytosis	1.64E-02
97	GO:0051707: response to other organism	1.73E-02
98	GO:0009644: response to high light intensity	1.83E-02
99	GO:0009965: leaf morphogenesis	1.88E-02
100	GO:0006810: transport	2.07E-02
101	GO:0006486: protein glycosylation	2.14E-02
102	GO:0051603: proteolysis involved in cellular protein catabolic process	2.19E-02
103	GO:0009909: regulation of flower development	2.30E-02
104	GO:0006096: glycolytic process	2.41E-02
105	GO:0009620: response to fungus	2.58E-02
106	GO:0018105: peptidyl-serine phosphorylation	2.81E-02
107	GO:0035556: intracellular signal transduction	2.86E-02
108	GO:0009742: brassinosteroid mediated signaling pathway	2.87E-02
109	GO:0009737: response to abscisic acid	3.29E-02
110	GO:0040008: regulation of growth	3.93E-02
111	GO:0010150: leaf senescence	4.06E-02
112	GO:0009617: response to bacterium	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0000247: C-8 sterol isomerase activity	0.00E+00
2	GO:0047750: cholestenol delta-isomerase activity	0.00E+00
3	GO:0051082: unfolded protein binding	4.93E-10
4	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.81E-05
5	GO:0015085: calcium ion transmembrane transporter activity	7.75E-05
6	GO:0004190: aspartic-type endopeptidase activity	1.81E-04
7	GO:0004338: glucan exo-1,3-beta-glucosidase activity	1.85E-04
8	GO:0004634: phosphopyruvate hydratase activity	1.85E-04
9	GO:0052691: UDP-arabinopyranose mutase activity	1.85E-04
10	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	1.85E-04
11	GO:0005524: ATP binding	2.39E-04
12	GO:0004298: threonine-type endopeptidase activity	2.78E-04
13	GO:0004449: isocitrate dehydrogenase (NAD+) activity	4.49E-04
14	GO:0043495: protein anchor	5.98E-04
15	GO:0016866: intramolecular transferase activity	5.98E-04
16	GO:0002020: protease binding	7.57E-04
17	GO:1990714: hydroxyproline O-galactosyltransferase activity	9.24E-04
18	GO:0004012: phospholipid-translocating ATPase activity	1.10E-03
19	GO:0000287: magnesium ion binding	1.15E-03
20	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.29E-03
21	GO:0016301: kinase activity	1.39E-03
22	GO:0015112: nitrate transmembrane transporter activity	2.14E-03
23	GO:0004713: protein tyrosine kinase activity	2.37E-03
24	GO:0004674: protein serine/threonine kinase activity	2.75E-03
25	GO:0008378: galactosyltransferase activity	2.86E-03
26	GO:0031072: heat shock protein binding	3.12E-03
27	GO:0015114: phosphate ion transmembrane transporter activity	3.12E-03
28	GO:0005388: calcium-transporting ATPase activity	3.12E-03
29	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.12E-03
30	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.38E-03
31	GO:0003712: transcription cofactor activity	3.66E-03
32	GO:0016758: transferase activity, transferring hexosyl groups	3.80E-03
33	GO:0033612: receptor serine/threonine kinase binding	4.82E-03
34	GO:0004672: protein kinase activity	4.95E-03
35	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.01E-03
36	GO:0008810: cellulase activity	5.45E-03
37	GO:0016760: cellulose synthase (UDP-forming) activity	5.45E-03
38	GO:0003756: protein disulfide isomerase activity	5.77E-03
39	GO:0030246: carbohydrate binding	7.57E-03
40	GO:0005516: calmodulin binding	8.72E-03
41	GO:0008237: metallopeptidase activity	9.36E-03
42	GO:0008233: peptidase activity	1.01E-02
43	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.10E-02
44	GO:0004683: calmodulin-dependent protein kinase activity	1.14E-02
45	GO:0004806: triglyceride lipase activity	1.14E-02
46	GO:0030247: polysaccharide binding	1.14E-02
47	GO:0005509: calcium ion binding	1.15E-02
48	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.22E-02
49	GO:0004722: protein serine/threonine phosphatase activity	1.35E-02
50	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.36E-02
51	GO:0000149: SNARE binding	1.54E-02
52	GO:0005484: SNAP receptor activity	1.73E-02
53	GO:0051537: 2 iron, 2 sulfur cluster binding	1.83E-02
54	GO:0051287: NAD binding	1.98E-02
55	GO:0016298: lipase activity	2.19E-02
56	GO:0031625: ubiquitin protein ligase binding	2.30E-02
57	GO:0016887: ATPase activity	2.37E-02
58	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.58E-02
59	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.58E-02
60	GO:0005515: protein binding	3.64E-02
61	GO:0008565: protein transporter activity	3.67E-02
62	GO:0005507: copper ion binding	3.85E-02
63	GO:0008194: UDP-glycosyltransferase activity	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.67E-09
2	GO:0005788: endoplasmic reticulum lumen	2.10E-08
3	GO:0005783: endoplasmic reticulum	5.40E-08
4	GO:0005773: vacuole	8.13E-06
5	GO:0005774: vacuolar membrane	1.10E-05
6	GO:0048046: apoplast	1.32E-05
7	GO:0000138: Golgi trans cisterna	7.75E-05
8	GO:0005829: cytosol	1.51E-04
9	GO:0005795: Golgi stack	1.81E-04
10	GO:0000015: phosphopyruvate hydratase complex	1.85E-04
11	GO:0000502: proteasome complex	2.14E-04
12	GO:0005839: proteasome core complex	2.78E-04
13	GO:0016363: nuclear matrix	1.10E-03
14	GO:0005789: endoplasmic reticulum membrane	1.21E-03
15	GO:0005811: lipid particle	1.69E-03
16	GO:0019773: proteasome core complex, alpha-subunit complex	1.69E-03
17	GO:0005618: cell wall	1.79E-03
18	GO:0009506: plasmodesma	2.28E-03
19	GO:0005740: mitochondrial envelope	2.37E-03
20	GO:0008541: proteasome regulatory particle, lid subcomplex	2.61E-03
21	GO:0005750: mitochondrial respiratory chain complex III	3.38E-03
22	GO:0045271: respiratory chain complex I	4.52E-03
23	GO:0005741: mitochondrial outer membrane	4.82E-03
24	GO:0022626: cytosolic ribosome	4.91E-03
25	GO:0009504: cell plate	7.49E-03
26	GO:0031225: anchored component of membrane	9.13E-03
27	GO:0016020: membrane	1.11E-02
28	GO:0000151: ubiquitin ligase complex	1.22E-02
29	GO:0005794: Golgi apparatus	1.28E-02
30	GO:0031201: SNARE complex	1.64E-02
31	GO:0090406: pollen tube	1.73E-02
32	GO:0031966: mitochondrial membrane	2.04E-02
33	GO:0005747: mitochondrial respiratory chain complex I	2.47E-02
34	GO:0016021: integral component of membrane	2.58E-02
35	GO:0005737: cytoplasm	2.86E-02
36	GO:0005623: cell	3.29E-02
37	GO:0005759: mitochondrial matrix	3.80E-02
38	GO:0009507: chloroplast	4.20E-02
39	GO:0005802: trans-Golgi network	4.33E-02
40	GO:0005622: intracellular	4.79E-02
41	GO:0046658: anchored component of plasma membrane	4.95E-02