co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051238: sequestering of metal ion	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
5	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
6	GO:0046109: uridine biosynthetic process	0.00E+00
7	GO:0042742: defense response to bacterium	3.00E-08
8	GO:0009617: response to bacterium	1.01E-06
9	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.59E-06
10	GO:0010150: leaf senescence	6.68E-06
11	GO:0071456: cellular response to hypoxia	1.23E-05
12	GO:0055114: oxidation-reduction process	9.52E-05
13	GO:0009627: systemic acquired resistance	1.10E-04
14	GO:0009697: salicylic acid biosynthetic process	1.21E-04
15	GO:0009817: defense response to fungus, incompatible interaction	1.45E-04
16	GO:0006099: tricarboxylic acid cycle	2.36E-04
17	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.36E-04
18	GO:0006952: defense response	2.61E-04
19	GO:0080167: response to karrikin	2.97E-04
20	GO:0010230: alternative respiration	3.52E-04
21	GO:0051775: response to redox state	3.52E-04
22	GO:0042759: long-chain fatty acid biosynthetic process	3.52E-04
23	GO:0080120: CAAX-box protein maturation	3.52E-04
24	GO:0034975: protein folding in endoplasmic reticulum	3.52E-04
25	GO:0071586: CAAX-box protein processing	3.52E-04
26	GO:0060627: regulation of vesicle-mediated transport	3.52E-04
27	GO:0015760: glucose-6-phosphate transport	3.52E-04
28	GO:1990641: response to iron ion starvation	3.52E-04
29	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.52E-04
30	GO:0010112: regulation of systemic acquired resistance	5.65E-04
31	GO:0009751: response to salicylic acid	6.46E-04
32	GO:0015712: hexose phosphate transport	7.67E-04
33	GO:0060919: auxin influx	7.67E-04
34	GO:0048569: post-embryonic animal organ development	7.67E-04
35	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	7.67E-04
36	GO:0006101: citrate metabolic process	7.67E-04
37	GO:0044419: interspecies interaction between organisms	7.67E-04
38	GO:0031349: positive regulation of defense response	7.67E-04
39	GO:0006032: chitin catabolic process	7.77E-04
40	GO:0006468: protein phosphorylation	8.71E-04
41	GO:0006979: response to oxidative stress	8.76E-04
42	GO:0009682: induced systemic resistance	8.95E-04
43	GO:0055046: microgametogenesis	1.16E-03
44	GO:0008219: cell death	1.17E-03
45	GO:0080055: low-affinity nitrate transport	1.24E-03
46	GO:0035436: triose phosphate transmembrane transport	1.24E-03
47	GO:0010476: gibberellin mediated signaling pathway	1.24E-03
48	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.24E-03
49	GO:0010272: response to silver ion	1.24E-03
50	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.24E-03
51	GO:0015714: phosphoenolpyruvate transport	1.24E-03
52	GO:1900055: regulation of leaf senescence	1.24E-03
53	GO:0071367: cellular response to brassinosteroid stimulus	1.24E-03
54	GO:0010498: proteasomal protein catabolic process	1.24E-03
55	GO:0010359: regulation of anion channel activity	1.24E-03
56	GO:0002237: response to molecule of bacterial origin	1.30E-03
57	GO:0006499: N-terminal protein myristoylation	1.32E-03
58	GO:0034976: response to endoplasmic reticulum stress	1.62E-03
59	GO:0001676: long-chain fatty acid metabolic process	1.79E-03
60	GO:0046513: ceramide biosynthetic process	1.79E-03
61	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.79E-03
62	GO:0048194: Golgi vesicle budding	1.79E-03
63	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.79E-03
64	GO:0010104: regulation of ethylene-activated signaling pathway	1.79E-03
65	GO:2000377: regulation of reactive oxygen species metabolic process	1.80E-03
66	GO:0006874: cellular calcium ion homeostasis	1.98E-03
67	GO:0042542: response to hydrogen peroxide	2.07E-03
68	GO:0016998: cell wall macromolecule catabolic process	2.18E-03
69	GO:0015713: phosphoglycerate transport	2.40E-03
70	GO:0080142: regulation of salicylic acid biosynthetic process	2.40E-03
71	GO:0006542: glutamine biosynthetic process	2.40E-03
72	GO:0010109: regulation of photosynthesis	2.40E-03
73	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.40E-03
74	GO:0006012: galactose metabolic process	2.60E-03
75	GO:0006855: drug transmembrane transport	2.66E-03
76	GO:0009561: megagametogenesis	2.82E-03
77	GO:0006564: L-serine biosynthetic process	3.07E-03
78	GO:0006097: glyoxylate cycle	3.07E-03
79	GO:0000304: response to singlet oxygen	3.07E-03
80	GO:0034052: positive regulation of plant-type hypersensitive response	3.07E-03
81	GO:0030041: actin filament polymerization	3.07E-03
82	GO:0002238: response to molecule of fungal origin	3.79E-03
83	GO:0009643: photosynthetic acclimation	3.79E-03
84	GO:0015691: cadmium ion transport	3.79E-03
85	GO:0010256: endomembrane system organization	3.79E-03
86	GO:1902456: regulation of stomatal opening	3.79E-03
87	GO:0010315: auxin efflux	3.79E-03
88	GO:1900425: negative regulation of defense response to bacterium	3.79E-03
89	GO:0006096: glycolytic process	3.95E-03
90	GO:0009626: plant-type hypersensitive response	4.28E-03
91	GO:0010193: response to ozone	4.40E-03
92	GO:0000302: response to reactive oxygen species	4.40E-03
93	GO:0009620: response to fungus	4.46E-03
94	GO:0048444: floral organ morphogenesis	4.57E-03
95	GO:0006508: proteolysis	4.83E-03
96	GO:0009737: response to abscisic acid	5.20E-03
97	GO:0050829: defense response to Gram-negative bacterium	5.40E-03
98	GO:1902074: response to salt	5.40E-03
99	GO:0009395: phospholipid catabolic process	5.40E-03
100	GO:0043090: amino acid import	5.40E-03
101	GO:0009735: response to cytokinin	6.19E-03
102	GO:0019375: galactolipid biosynthetic process	6.27E-03
103	GO:2000070: regulation of response to water deprivation	6.27E-03
104	GO:0006102: isocitrate metabolic process	6.27E-03
105	GO:0030091: protein repair	6.27E-03
106	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.27E-03
107	GO:0046777: protein autophosphorylation	6.27E-03
108	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	6.27E-03
109	GO:0009819: drought recovery	6.27E-03
110	GO:0009607: response to biotic stimulus	6.74E-03
111	GO:0046686: response to cadmium ion	7.08E-03
112	GO:0042128: nitrate assimilation	7.12E-03
113	GO:0010204: defense response signaling pathway, resistance gene-independent	7.19E-03
114	GO:0009699: phenylpropanoid biosynthetic process	7.19E-03
115	GO:0006002: fructose 6-phosphate metabolic process	7.19E-03
116	GO:0001558: regulation of cell growth	7.19E-03
117	GO:0010120: camalexin biosynthetic process	7.19E-03
118	GO:0009056: catabolic process	8.16E-03
119	GO:0090333: regulation of stomatal closure	8.16E-03
120	GO:0010205: photoinhibition	9.17E-03
121	GO:0043067: regulation of programmed cell death	9.17E-03
122	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	9.17E-03
123	GO:0009407: toxin catabolic process	9.19E-03
124	GO:0009688: abscisic acid biosynthetic process	1.02E-02
125	GO:0010162: seed dormancy process	1.02E-02
126	GO:0007064: mitotic sister chromatid cohesion	1.02E-02
127	GO:0006995: cellular response to nitrogen starvation	1.02E-02
128	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.02E-02
129	GO:0000272: polysaccharide catabolic process	1.13E-02
130	GO:0050832: defense response to fungus	1.13E-02
131	GO:0009089: lysine biosynthetic process via diaminopimelate	1.13E-02
132	GO:0072593: reactive oxygen species metabolic process	1.13E-02
133	GO:0007166: cell surface receptor signaling pathway	1.19E-02
134	GO:0006790: sulfur compound metabolic process	1.25E-02
135	GO:0012501: programmed cell death	1.25E-02
136	GO:0015706: nitrate transport	1.25E-02
137	GO:0002213: defense response to insect	1.25E-02
138	GO:0009744: response to sucrose	1.37E-02
139	GO:0006094: gluconeogenesis	1.37E-02
140	GO:0051707: response to other organism	1.37E-02
141	GO:0009651: response to salt stress	1.49E-02
142	GO:0010540: basipetal auxin transport	1.49E-02
143	GO:0009636: response to toxic substance	1.54E-02
144	GO:0070588: calcium ion transmembrane transport	1.61E-02
145	GO:0046854: phosphatidylinositol phosphorylation	1.61E-02
146	GO:0010053: root epidermal cell differentiation	1.61E-02
147	GO:0042343: indole glucosinolate metabolic process	1.61E-02
148	GO:0007030: Golgi organization	1.61E-02
149	GO:0009846: pollen germination	1.72E-02
150	GO:0000162: tryptophan biosynthetic process	1.74E-02
151	GO:0009809: lignin biosynthetic process	1.85E-02
152	GO:0080147: root hair cell development	1.88E-02
153	GO:0051302: regulation of cell division	2.01E-02
154	GO:0098542: defense response to other organism	2.15E-02
155	GO:0048316: seed development	2.26E-02
156	GO:0031348: negative regulation of defense response	2.29E-02
157	GO:0010200: response to chitin	2.40E-02
158	GO:0071369: cellular response to ethylene stimulus	2.44E-02
159	GO:0010227: floral organ abscission	2.44E-02
160	GO:0071215: cellular response to abscisic acid stimulus	2.44E-02
161	GO:0044550: secondary metabolite biosynthetic process	2.55E-02
162	GO:0009306: protein secretion	2.59E-02
163	GO:0010584: pollen exine formation	2.59E-02
164	GO:0006817: phosphate ion transport	2.59E-02
165	GO:0009624: response to nematode	2.63E-02
166	GO:0010154: fruit development	3.06E-02
167	GO:0009749: response to glucose	3.39E-02
168	GO:0055085: transmembrane transport	3.43E-02
169	GO:0032259: methylation	3.54E-02
170	GO:0002229: defense response to oomycetes	3.55E-02
171	GO:0009845: seed germination	3.56E-02
172	GO:0016042: lipid catabolic process	3.60E-02
173	GO:0009630: gravitropism	3.72E-02
174	GO:0007264: small GTPase mediated signal transduction	3.72E-02
175	GO:0042744: hydrogen peroxide catabolic process	3.75E-02
176	GO:0006464: cellular protein modification process	4.07E-02
177	GO:0016036: cellular response to phosphate starvation	4.23E-02
178	GO:0006904: vesicle docking involved in exocytosis	4.25E-02
179	GO:0051607: defense response to virus	4.43E-02
180	GO:0009615: response to virus	4.62E-02
181	GO:0009816: defense response to bacterium, incompatible interaction	4.80E-02
182	GO:0010029: regulation of seed germination	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0035885: exochitinase activity	0.00E+00
2	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
5	GO:0008843: endochitinase activity	0.00E+00
6	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
7	GO:0004674: protein serine/threonine kinase activity	6.26E-07
8	GO:0004012: phospholipid-translocating ATPase activity	4.90E-06
9	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.84E-05
10	GO:0005496: steroid binding	1.21E-04
11	GO:0005524: ATP binding	2.51E-04
12	GO:0016301: kinase activity	2.87E-04
13	GO:0003756: protein disulfide isomerase activity	2.94E-04
14	GO:0019707: protein-cysteine S-acyltransferase activity	3.52E-04
15	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.52E-04
16	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	3.52E-04
17	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.52E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.52E-04
19	GO:0004776: succinate-CoA ligase (GDP-forming) activity	7.67E-04
20	GO:0010331: gibberellin binding	7.67E-04
21	GO:0050291: sphingosine N-acyltransferase activity	7.67E-04
22	GO:0003994: aconitate hydratase activity	7.67E-04
23	GO:0015152: glucose-6-phosphate transmembrane transporter activity	7.67E-04
24	GO:0004775: succinate-CoA ligase (ADP-forming) activity	7.67E-04
25	GO:0015036: disulfide oxidoreductase activity	7.67E-04
26	GO:0000287: magnesium ion binding	8.86E-04
27	GO:0016746: transferase activity, transferring acyl groups	9.55E-04
28	GO:0005315: inorganic phosphate transmembrane transporter activity	1.16E-03
29	GO:0004022: alcohol dehydrogenase (NAD) activity	1.16E-03
30	GO:0004751: ribose-5-phosphate isomerase activity	1.24E-03
31	GO:0004383: guanylate cyclase activity	1.24E-03
32	GO:0016805: dipeptidase activity	1.24E-03
33	GO:0071917: triose-phosphate transmembrane transporter activity	1.24E-03
34	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.24E-03
35	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.24E-03
36	GO:0015238: drug transmembrane transporter activity	1.25E-03
37	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.40E-03
38	GO:0005516: calmodulin binding	1.41E-03
39	GO:0004970: ionotropic glutamate receptor activity	1.45E-03
40	GO:0005217: intracellular ligand-gated ion channel activity	1.45E-03
41	GO:0004190: aspartic-type endopeptidase activity	1.45E-03
42	GO:0008061: chitin binding	1.45E-03
43	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.79E-03
44	GO:0015297: antiporter activity	1.95E-03
45	GO:0009916: alternative oxidase activity	2.40E-03
46	GO:0015120: phosphoglycerate transmembrane transporter activity	2.40E-03
47	GO:0004737: pyruvate decarboxylase activity	2.40E-03
48	GO:0010328: auxin influx transmembrane transporter activity	2.40E-03
49	GO:0015293: symporter activity	2.53E-03
50	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	3.07E-03
51	GO:0004356: glutamate-ammonia ligase activity	3.07E-03
52	GO:0045431: flavonol synthase activity	3.07E-03
53	GO:0030976: thiamine pyrophosphate binding	3.79E-03
54	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.79E-03
55	GO:0005507: copper ion binding	4.17E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	4.57E-03
57	GO:0003978: UDP-glucose 4-epimerase activity	4.57E-03
58	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.57E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.57E-03
60	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.57E-03
61	GO:0102391: decanoate--CoA ligase activity	4.57E-03
62	GO:0050660: flavin adenine dinucleotide binding	5.09E-03
63	GO:0005085: guanyl-nucleotide exchange factor activity	5.40E-03
64	GO:0004467: long-chain fatty acid-CoA ligase activity	5.40E-03
65	GO:0016831: carboxy-lyase activity	5.40E-03
66	GO:0008235: metalloexopeptidase activity	5.40E-03
67	GO:0003872: 6-phosphofructokinase activity	5.40E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	6.27E-03
69	GO:0004714: transmembrane receptor protein tyrosine kinase activity	6.27E-03
70	GO:0004034: aldose 1-epimerase activity	6.27E-03
71	GO:0052747: sinapyl alcohol dehydrogenase activity	6.27E-03
72	GO:0005509: calcium ion binding	7.09E-03
73	GO:0004630: phospholipase D activity	7.19E-03
74	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	7.19E-03
75	GO:0020037: heme binding	7.28E-03
76	GO:0030247: polysaccharide binding	7.51E-03
77	GO:0004683: calmodulin-dependent protein kinase activity	7.51E-03
78	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	7.91E-03
79	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.37E-03
80	GO:0030955: potassium ion binding	9.17E-03
81	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	9.17E-03
82	GO:0004743: pyruvate kinase activity	9.17E-03
83	GO:0045309: protein phosphorylated amino acid binding	9.17E-03
84	GO:0030145: manganese ion binding	9.64E-03
85	GO:0004568: chitinase activity	1.02E-02
86	GO:0008171: O-methyltransferase activity	1.02E-02
87	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.06E-02
88	GO:0004177: aminopeptidase activity	1.13E-02
89	GO:0008559: xenobiotic-transporting ATPase activity	1.13E-02
90	GO:0019904: protein domain specific binding	1.13E-02
91	GO:0009055: electron carrier activity	1.14E-02
92	GO:0050661: NADP binding	1.21E-02
93	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.25E-02
94	GO:0004364: glutathione transferase activity	1.31E-02
95	GO:0015114: phosphate ion transmembrane transporter activity	1.37E-02
96	GO:0005388: calcium-transporting ATPase activity	1.37E-02
97	GO:0010329: auxin efflux transmembrane transporter activity	1.37E-02
98	GO:0016491: oxidoreductase activity	1.41E-02
99	GO:0004175: endopeptidase activity	1.49E-02
100	GO:0004867: serine-type endopeptidase inhibitor activity	1.61E-02
101	GO:0031418: L-ascorbic acid binding	1.88E-02
102	GO:0003954: NADH dehydrogenase activity	1.88E-02
103	GO:0016298: lipase activity	1.91E-02
104	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.15E-02
105	GO:0045735: nutrient reservoir activity	2.18E-02
106	GO:0005506: iron ion binding	2.37E-02
107	GO:0022891: substrate-specific transmembrane transporter activity	2.44E-02
108	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.59E-02
109	GO:0015035: protein disulfide oxidoreductase activity	2.71E-02
110	GO:0005215: transporter activity	2.88E-02
111	GO:0016853: isomerase activity	3.22E-02
112	GO:0050662: coenzyme binding	3.22E-02
113	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.90E-02
114	GO:0019825: oxygen binding	4.05E-02
115	GO:0008483: transaminase activity	4.25E-02
116	GO:0051213: dioxygenase activity	4.62E-02
117	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0045252: oxoglutarate dehydrogenase complex	0.00E+00
3	GO:0005886: plasma membrane	1.87E-09
4	GO:0016021: integral component of membrane	1.29E-05
5	GO:0000138: Golgi trans cisterna	3.52E-04
6	GO:0005911: cell-cell junction	3.52E-04
7	GO:0005783: endoplasmic reticulum	6.10E-04
8	GO:0031304: intrinsic component of mitochondrial inner membrane	7.67E-04
9	GO:0031314: extrinsic component of mitochondrial inner membrane	7.67E-04
10	GO:0005829: cytosol	8.40E-04
11	GO:0005789: endoplasmic reticulum membrane	2.37E-03
12	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.40E-03
13	GO:0030660: Golgi-associated vesicle membrane	2.40E-03
14	GO:0005945: 6-phosphofructokinase complex	3.07E-03
15	GO:0005794: Golgi apparatus	3.62E-03
16	GO:0032588: trans-Golgi network membrane	3.79E-03
17	GO:0009505: plant-type cell wall	4.43E-03
18	GO:0030173: integral component of Golgi membrane	4.57E-03
19	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	6.27E-03
20	GO:0005788: endoplasmic reticulum lumen	6.74E-03
21	GO:0000326: protein storage vacuole	7.19E-03
22	GO:0031901: early endosome membrane	8.16E-03
23	GO:0005618: cell wall	9.17E-03
24	GO:0005740: mitochondrial envelope	1.02E-02
25	GO:0016020: membrane	1.04E-02
26	GO:0005765: lysosomal membrane	1.13E-02
27	GO:0090404: pollen tube tip	1.13E-02
28	GO:0031902: late endosome membrane	1.26E-02
29	GO:0030176: integral component of endoplasmic reticulum membrane	1.61E-02
30	GO:0005802: trans-Golgi network	1.64E-02
31	GO:0005769: early endosome	1.74E-02
32	GO:0048046: apoplast	1.79E-02
33	GO:0070469: respiratory chain	2.01E-02
34	GO:0005770: late endosome	3.06E-02
35	GO:0005743: mitochondrial inner membrane	3.41E-02
36	GO:0000145: exocyst	3.72E-02
37	GO:0071944: cell periphery	3.90E-02
38	GO:0031225: anchored component of membrane	4.62E-02