GO Enrichment Analysis of Co-expressed Genes with
AT3G54790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 2 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 3 | GO:0015979: photosynthesis | 9.23E-07 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 1.18E-06 |
| 5 | GO:0010207: photosystem II assembly | 2.29E-06 |
| 6 | GO:0009772: photosynthetic electron transport in photosystem II | 2.41E-05 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 8.80E-05 |
| 8 | GO:0035304: regulation of protein dephosphorylation | 1.66E-04 |
| 9 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.66E-04 |
| 10 | GO:0090391: granum assembly | 2.81E-04 |
| 11 | GO:1901332: negative regulation of lateral root development | 4.06E-04 |
| 12 | GO:0009697: salicylic acid biosynthetic process | 6.87E-04 |
| 13 | GO:0010438: cellular response to sulfur starvation | 6.87E-04 |
| 14 | GO:0009913: epidermal cell differentiation | 8.40E-04 |
| 15 | GO:0009759: indole glucosinolate biosynthetic process | 8.40E-04 |
| 16 | GO:0042549: photosystem II stabilization | 8.40E-04 |
| 17 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 8.40E-04 |
| 18 | GO:0009228: thiamine biosynthetic process | 8.40E-04 |
| 19 | GO:0042372: phylloquinone biosynthetic process | 9.99E-04 |
| 20 | GO:0010196: nonphotochemical quenching | 1.17E-03 |
| 21 | GO:0010492: maintenance of shoot apical meristem identity | 1.34E-03 |
| 22 | GO:0022900: electron transport chain | 1.53E-03 |
| 23 | GO:0010206: photosystem II repair | 1.73E-03 |
| 24 | GO:0048507: meristem development | 1.73E-03 |
| 25 | GO:0010205: photoinhibition | 1.93E-03 |
| 26 | GO:0019684: photosynthesis, light reaction | 2.36E-03 |
| 27 | GO:0046856: phosphatidylinositol dephosphorylation | 2.36E-03 |
| 28 | GO:0002213: defense response to insect | 2.58E-03 |
| 29 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.58E-03 |
| 30 | GO:0009718: anthocyanin-containing compound biosynthetic process | 2.82E-03 |
| 31 | GO:0006094: gluconeogenesis | 2.82E-03 |
| 32 | GO:0010143: cutin biosynthetic process | 3.06E-03 |
| 33 | GO:0071732: cellular response to nitric oxide | 3.30E-03 |
| 34 | GO:0000162: tryptophan biosynthetic process | 3.56E-03 |
| 35 | GO:2000377: regulation of reactive oxygen species metabolic process | 3.81E-03 |
| 36 | GO:0016114: terpenoid biosynthetic process | 4.35E-03 |
| 37 | GO:0016998: cell wall macromolecule catabolic process | 4.35E-03 |
| 38 | GO:0030245: cellulose catabolic process | 4.63E-03 |
| 39 | GO:0071369: cellular response to ethylene stimulus | 4.91E-03 |
| 40 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.91E-03 |
| 41 | GO:0080022: primary root development | 5.80E-03 |
| 42 | GO:0000413: protein peptidyl-prolyl isomerization | 5.80E-03 |
| 43 | GO:0042335: cuticle development | 5.80E-03 |
| 44 | GO:0071472: cellular response to salt stress | 6.11E-03 |
| 45 | GO:0010305: leaf vascular tissue pattern formation | 6.11E-03 |
| 46 | GO:0015986: ATP synthesis coupled proton transport | 6.42E-03 |
| 47 | GO:0048825: cotyledon development | 6.74E-03 |
| 48 | GO:0000302: response to reactive oxygen species | 7.07E-03 |
| 49 | GO:0016032: viral process | 7.40E-03 |
| 50 | GO:0071281: cellular response to iron ion | 7.73E-03 |
| 51 | GO:0009828: plant-type cell wall loosening | 8.08E-03 |
| 52 | GO:0016310: phosphorylation | 8.55E-03 |
| 53 | GO:0010027: thylakoid membrane organization | 9.13E-03 |
| 54 | GO:0010411: xyloglucan metabolic process | 1.02E-02 |
| 55 | GO:0045892: negative regulation of transcription, DNA-templated | 1.08E-02 |
| 56 | GO:0010311: lateral root formation | 1.14E-02 |
| 57 | GO:0034599: cellular response to oxidative stress | 1.34E-02 |
| 58 | GO:0009753: response to jasmonic acid | 1.40E-02 |
| 59 | GO:0042546: cell wall biogenesis | 1.60E-02 |
| 60 | GO:0006855: drug transmembrane transport | 1.74E-02 |
| 61 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 1.74E-02 |
| 62 | GO:0009664: plant-type cell wall organization | 1.83E-02 |
| 63 | GO:0006364: rRNA processing | 1.92E-02 |
| 64 | GO:0009585: red, far-red light phototransduction | 1.92E-02 |
| 65 | GO:0009735: response to cytokinin | 2.13E-02 |
| 66 | GO:0006096: glycolytic process | 2.17E-02 |
| 67 | GO:0009624: response to nematode | 2.47E-02 |
| 68 | GO:0045893: positive regulation of transcription, DNA-templated | 2.67E-02 |
| 69 | GO:0009058: biosynthetic process | 3.01E-02 |
| 70 | GO:0009845: seed germination | 3.07E-02 |
| 71 | GO:0042744: hydrogen peroxide catabolic process | 3.18E-02 |
| 72 | GO:0007623: circadian rhythm | 3.65E-02 |
| 73 | GO:0045490: pectin catabolic process | 3.65E-02 |
| 74 | GO:0009451: RNA modification | 3.71E-02 |
| 75 | GO:0007166: cell surface receptor signaling pathway | 4.01E-02 |
| 76 | GO:0071555: cell wall organization | 4.69E-02 |
| 77 | GO:0042742: defense response to bacterium | 4.69E-02 |
| 78 | GO:0009826: unidimensional cell growth | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0008909: isochorismate synthase activity | 6.91E-05 |
| 4 | GO:0010242: oxygen evolving activity | 6.91E-05 |
| 5 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 6.91E-05 |
| 6 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 1.66E-04 |
| 7 | GO:0016851: magnesium chelatase activity | 4.06E-04 |
| 8 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 8.40E-04 |
| 9 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 8.40E-04 |
| 10 | GO:0004332: fructose-bisphosphate aldolase activity | 8.40E-04 |
| 11 | GO:0004130: cytochrome-c peroxidase activity | 8.40E-04 |
| 12 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 8.40E-04 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.65E-03 |
| 14 | GO:0047372: acylglycerol lipase activity | 2.36E-03 |
| 15 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 2.58E-03 |
| 16 | GO:0031072: heat shock protein binding | 2.82E-03 |
| 17 | GO:0008266: poly(U) RNA binding | 3.06E-03 |
| 18 | GO:0005528: FK506 binding | 3.81E-03 |
| 19 | GO:0043424: protein histidine kinase binding | 4.08E-03 |
| 20 | GO:0004176: ATP-dependent peptidase activity | 4.35E-03 |
| 21 | GO:0030570: pectate lyase activity | 4.91E-03 |
| 22 | GO:0008810: cellulase activity | 4.91E-03 |
| 23 | GO:0003756: protein disulfide isomerase activity | 5.20E-03 |
| 24 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.11E-03 |
| 25 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 7.07E-03 |
| 26 | GO:0016791: phosphatase activity | 8.08E-03 |
| 27 | GO:0016597: amino acid binding | 8.77E-03 |
| 28 | GO:0016168: chlorophyll binding | 9.50E-03 |
| 29 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.02E-02 |
| 30 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 1.06E-02 |
| 31 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 1.18E-02 |
| 32 | GO:0003746: translation elongation factor activity | 1.30E-02 |
| 33 | GO:0009055: electron carrier activity | 1.40E-02 |
| 34 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.65E-02 |
| 35 | GO:0016301: kinase activity | 2.20E-02 |
| 36 | GO:0016874: ligase activity | 2.37E-02 |
| 37 | GO:0003779: actin binding | 2.42E-02 |
| 38 | GO:0051082: unfolded protein binding | 2.47E-02 |
| 39 | GO:0016746: transferase activity, transferring acyl groups | 2.52E-02 |
| 40 | GO:0016787: hydrolase activity | 2.74E-02 |
| 41 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.07E-02 |
| 42 | GO:0016829: lyase activity | 3.07E-02 |
| 43 | GO:0030246: carbohydrate binding | 3.13E-02 |
| 44 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.47E-02 |
| 45 | GO:0003743: translation initiation factor activity | 4.07E-02 |
| 46 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.32E-02 |
| 47 | GO:0005509: calcium ion binding | 4.33E-02 |
| 48 | GO:0044212: transcription regulatory region DNA binding | 4.69E-02 |
| 49 | GO:0005515: protein binding | 4.83E-02 |
| 50 | GO:0004601: peroxidase activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009534: chloroplast thylakoid | 9.64E-20 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.75E-15 |
| 4 | GO:0009507: chloroplast | 5.39E-14 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 6.47E-10 |
| 6 | GO:0009579: thylakoid | 3.36E-09 |
| 7 | GO:0031977: thylakoid lumen | 7.86E-08 |
| 8 | GO:0009515: granal stacked thylakoid | 6.91E-05 |
| 9 | GO:0009508: plastid chromosome | 1.19E-04 |
| 10 | GO:0030095: chloroplast photosystem II | 1.36E-04 |
| 11 | GO:0030093: chloroplast photosystem I | 1.66E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 2.16E-04 |
| 13 | GO:0010007: magnesium chelatase complex | 2.81E-04 |
| 14 | GO:0010287: plastoglobule | 3.52E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 4.53E-04 |
| 16 | GO:0009295: nucleoid | 6.19E-04 |
| 17 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 8.40E-04 |
| 18 | GO:0009570: chloroplast stroma | 1.03E-03 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 1.17E-03 |
| 20 | GO:0009538: photosystem I reaction center | 1.34E-03 |
| 21 | GO:0042644: chloroplast nucleoid | 1.73E-03 |
| 22 | GO:0009941: chloroplast envelope | 1.84E-03 |
| 23 | GO:0005578: proteinaceous extracellular matrix | 2.82E-03 |
| 24 | GO:0009522: photosystem I | 6.42E-03 |
| 25 | GO:0009523: photosystem II | 6.74E-03 |
| 26 | GO:0010319: stromule | 8.42E-03 |
| 27 | GO:0016021: integral component of membrane | 1.36E-02 |
| 28 | GO:0005618: cell wall | 1.76E-02 |