co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051290: protein heterotetramerization	0.00E+00
2	GO:0010425: DNA methylation on cytosine within a CNG sequence	0.00E+00
3	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
4	GO:0016048: detection of temperature stimulus	0.00E+00
5	GO:0031508: pericentric heterochromatin assembly	0.00E+00
6	GO:0080094: response to trehalose-6-phosphate	0.00E+00
7	GO:0006342: chromatin silencing	5.77E-08
8	GO:0010424: DNA methylation on cytosine within a CG sequence	1.24E-07
9	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.24E-07
10	GO:0006458: 'de novo' protein folding	8.63E-06
11	GO:0042026: protein refolding	8.63E-06
12	GO:0044030: regulation of DNA methylation	2.05E-05
13	GO:0006169: adenosine salvage	4.45E-05
14	GO:0010216: maintenance of DNA methylation	4.59E-05
15	GO:0045717: negative regulation of fatty acid biosynthetic process	1.10E-04
16	GO:0009662: etioplast organization	1.10E-04
17	GO:0071158: positive regulation of cell cycle arrest	1.10E-04
18	GO:0090309: positive regulation of methylation-dependent chromatin silencing	1.10E-04
19	GO:0015712: hexose phosphate transport	1.10E-04
20	GO:0061077: chaperone-mediated protein folding	1.30E-04
21	GO:0007005: mitochondrion organization	1.44E-04
22	GO:0035436: triose phosphate transmembrane transport	1.89E-04
23	GO:0032776: DNA methylation on cytosine	1.89E-04
24	GO:0035066: positive regulation of histone acetylation	1.89E-04
25	GO:0070828: heterochromatin organization	1.89E-04
26	GO:0006986: response to unfolded protein	2.78E-04
27	GO:0051085: chaperone mediated protein folding requiring cofactor	2.78E-04
28	GO:0035067: negative regulation of histone acetylation	2.78E-04
29	GO:0009694: jasmonic acid metabolic process	3.73E-04
30	GO:0051567: histone H3-K9 methylation	3.73E-04
31	GO:0015713: phosphoglycerate transport	3.73E-04
32	GO:0044209: AMP salvage	4.75E-04
33	GO:0042793: transcription from plastid promoter	5.82E-04
34	GO:0045814: negative regulation of gene expression, epigenetic	6.94E-04
35	GO:0006880: intracellular sequestering of iron ion	8.11E-04
36	GO:0006826: iron ion transport	8.11E-04
37	GO:0000105: histidine biosynthetic process	9.32E-04
38	GO:0052543: callose deposition in cell wall	9.32E-04
39	GO:0007155: cell adhesion	9.32E-04
40	GO:0006002: fructose 6-phosphate metabolic process	1.06E-03
41	GO:0048589: developmental growth	1.19E-03
42	GO:0006349: regulation of gene expression by genetic imprinting	1.32E-03
43	GO:0016569: covalent chromatin modification	1.45E-03
44	GO:0051555: flavonol biosynthetic process	1.47E-03
45	GO:0006325: chromatin organization	1.47E-03
46	GO:0006879: cellular iron ion homeostasis	1.61E-03
47	GO:0009934: regulation of meristem structural organization	2.09E-03
48	GO:0010039: response to iron ion	2.25E-03
49	GO:0051301: cell division	2.31E-03
50	GO:0007010: cytoskeleton organization	2.60E-03
51	GO:0009695: jasmonic acid biosynthetic process	2.77E-03
52	GO:0031408: oxylipin biosynthetic process	2.96E-03
53	GO:0006334: nucleosome assembly	2.96E-03
54	GO:0006306: DNA methylation	2.96E-03
55	GO:0010468: regulation of gene expression	3.13E-03
56	GO:0009294: DNA mediated transformation	3.33E-03
57	GO:0009411: response to UV	3.33E-03
58	GO:0042127: regulation of cell proliferation	3.53E-03
59	GO:0009658: chloroplast organization	4.04E-03
60	GO:0007059: chromosome segregation	4.35E-03
61	GO:0055072: iron ion homeostasis	4.56E-03
62	GO:0048366: leaf development	4.75E-03
63	GO:0000302: response to reactive oxygen species	4.77E-03
64	GO:0010583: response to cyclopentenone	4.99E-03
65	GO:0016032: viral process	4.99E-03
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.18E-03
67	GO:0006310: DNA recombination	5.45E-03
68	GO:0015979: photosynthesis	5.71E-03
69	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.39E-03
70	GO:0006281: DNA repair	7.38E-03
71	GO:0048767: root hair elongation	7.65E-03
72	GO:0010218: response to far red light	7.91E-03
73	GO:0009910: negative regulation of flower development	8.18E-03
74	GO:0009867: jasmonic acid mediated signaling pathway	8.71E-03
75	GO:0046686: response to cadmium ion	8.87E-03
76	GO:0010114: response to red light	1.04E-02
77	GO:0006260: DNA replication	1.19E-02
78	GO:0009908: flower development	1.19E-02
79	GO:0009909: regulation of flower development	1.38E-02
80	GO:0006096: glycolytic process	1.45E-02
81	GO:0043086: negative regulation of catalytic activity	1.45E-02
82	GO:0051726: regulation of cell cycle	1.72E-02
83	GO:0009790: embryo development	2.16E-02
84	GO:0071555: cell wall organization	2.66E-02
85	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.14E-02
86	GO:0006970: response to osmotic stress	3.50E-02
87	GO:0007049: cell cycle	3.59E-02
88	GO:0080167: response to karrikin	3.87E-02
89	GO:0045892: negative regulation of transcription, DNA-templated	4.45E-02
90	GO:0032259: methylation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
2	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
3	GO:0004636: phosphoribosyl-ATP diphosphatase activity	0.00E+00
4	GO:0004635: phosphoribosyl-AMP cyclohydrolase activity	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0003677: DNA binding	1.29E-08
7	GO:0046982: protein heterodimerization activity	4.84E-08
8	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	8.63E-06
9	GO:0003682: chromatin binding	4.33E-05
10	GO:0004001: adenosine kinase activity	4.45E-05
11	GO:0044183: protein binding involved in protein folding	4.59E-05
12	GO:0051082: unfolded protein binding	1.28E-04
13	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.89E-04
14	GO:0010429: methyl-CpNpN binding	1.89E-04
15	GO:0071917: triose-phosphate transmembrane transporter activity	1.89E-04
16	GO:0010428: methyl-CpNpG binding	1.89E-04
17	GO:0008199: ferric iron binding	2.78E-04
18	GO:0001872: (1->3)-beta-D-glucan binding	2.78E-04
19	GO:0004322: ferroxidase activity	2.78E-04
20	GO:0015120: phosphoglycerate transmembrane transporter activity	3.73E-04
21	GO:0010385: double-stranded methylated DNA binding	3.73E-04
22	GO:0005507: copper ion binding	5.41E-04
23	GO:0004784: superoxide dismutase activity	5.82E-04
24	GO:0042393: histone binding	7.37E-04
25	GO:0003872: 6-phosphofructokinase activity	8.11E-04
26	GO:0008327: methyl-CpG binding	1.61E-03
27	GO:0051087: chaperone binding	2.77E-03
28	GO:0003713: transcription coactivator activity	4.14E-03
29	GO:0005355: glucose transmembrane transporter activity	4.35E-03
30	GO:0005524: ATP binding	4.77E-03
31	GO:0016759: cellulose synthase activity	5.45E-03
32	GO:0005200: structural constituent of cytoskeleton	5.68E-03
33	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.68E-03
34	GO:0016757: transferase activity, transferring glycosyl groups	5.83E-03
35	GO:0030247: polysaccharide binding	6.89E-03
36	GO:0004842: ubiquitin-protein transferase activity	7.62E-03
37	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	7.91E-03
38	GO:0004650: polygalacturonase activity	1.55E-02
39	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.55E-02
40	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.55E-02
41	GO:0004386: helicase activity	1.75E-02
42	GO:0016829: lyase activity	2.05E-02
43	GO:0046910: pectinesterase inhibitor activity	2.31E-02
44	GO:0015297: antiporter activity	2.35E-02
45	GO:0008017: microtubule binding	2.51E-02
46	GO:0008194: UDP-glycosyltransferase activity	2.63E-02
47	GO:0008168: methyltransferase activity	3.23E-02
48	GO:0004672: protein kinase activity	3.90E-02
49	GO:0061630: ubiquitin protein ligase activity	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0000788: nuclear nucleosome	0.00E+00
2	GO:0005721: pericentric heterochromatin	0.00E+00
3	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
4	GO:0000786: nucleosome	8.60E-13
5	GO:0000790: nuclear chromatin	4.01E-06
6	GO:0042644: chloroplast nucleoid	2.58E-05
7	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	4.45E-05
8	GO:0031436: BRCA1-BARD1 complex	4.45E-05
9	GO:0005730: nucleolus	5.88E-05
10	GO:0000792: heterochromatin	1.10E-04
11	GO:0009941: chloroplast envelope	1.18E-04
12	GO:0070531: BRCA1-A complex	1.89E-04
13	GO:0009295: nucleoid	3.55E-04
14	GO:0009579: thylakoid	4.14E-04
15	GO:0010369: chromocenter	6.94E-04
16	GO:0009570: chloroplast stroma	1.12E-03
17	GO:0005720: nuclear heterochromatin	1.19E-03
18	GO:0009506: plasmodesma	1.31E-03
19	GO:0005876: spindle microtubule	1.32E-03
20	GO:0022626: cytosolic ribosome	1.96E-03
21	GO:0046658: anchored component of plasma membrane	3.47E-03
22	GO:0048046: apoplast	6.45E-03
23	GO:0009536: plastid	6.55E-03
24	GO:0005856: cytoskeleton	1.13E-02
25	GO:0009534: chloroplast thylakoid	1.59E-02
26	GO:0031225: anchored component of membrane	2.05E-02
27	GO:0005759: mitochondrial matrix	2.27E-02
28	GO:0005618: cell wall	2.88E-02
29	GO:0009505: plant-type cell wall	3.34E-02
30	GO:0031969: chloroplast membrane	3.87E-02
31	GO:0005634: nucleus	4.56E-02