co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070584: mitochondrion morphogenesis	0.00E+00
2	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
3	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
4	GO:0090701: specification of plant organ identity	0.00E+00
5	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
6	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
7	GO:0046677: response to antibiotic	0.00E+00
8	GO:0007172: signal complex assembly	0.00E+00
9	GO:0048449: floral organ formation	0.00E+00
10	GO:0015995: chlorophyll biosynthetic process	6.38E-05
11	GO:0000305: response to oxygen radical	8.09E-05
12	GO:0006824: cobalt ion transport	8.09E-05
13	GO:0010114: response to red light	1.53E-04
14	GO:0034755: iron ion transmembrane transport	1.93E-04
15	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.93E-04
16	GO:0015979: photosynthesis	2.91E-04
17	GO:0055114: oxidation-reduction process	4.12E-04
18	GO:0051639: actin filament network formation	4.66E-04
19	GO:0009741: response to brassinosteroid	4.83E-04
20	GO:0051764: actin crosslink formation	6.21E-04
21	GO:0009765: photosynthesis, light harvesting	6.21E-04
22	GO:0006749: glutathione metabolic process	6.21E-04
23	GO:0042938: dipeptide transport	6.21E-04
24	GO:0016123: xanthophyll biosynthetic process	7.86E-04
25	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.59E-04
26	GO:0032973: amino acid export	9.59E-04
27	GO:0006655: phosphatidylglycerol biosynthetic process	9.59E-04
28	GO:0009942: longitudinal axis specification	1.14E-03
29	GO:0010189: vitamin E biosynthetic process	1.14E-03
30	GO:0043090: amino acid import	1.34E-03
31	GO:0080186: developmental vegetative growth	1.34E-03
32	GO:0009769: photosynthesis, light harvesting in photosystem II	1.34E-03
33	GO:0009645: response to low light intensity stimulus	1.34E-03
34	GO:0051510: regulation of unidimensional cell growth	1.34E-03
35	GO:0009642: response to light intensity	1.54E-03
36	GO:0050821: protein stabilization	1.54E-03
37	GO:0009640: photomorphogenesis	1.74E-03
38	GO:0007186: G-protein coupled receptor signaling pathway	1.76E-03
39	GO:0009657: plastid organization	1.76E-03
40	GO:0048574: long-day photoperiodism, flowering	1.76E-03
41	GO:0007389: pattern specification process	1.76E-03
42	GO:0010206: photosystem II repair	1.98E-03
43	GO:0080144: amino acid homeostasis	1.98E-03
44	GO:0045454: cell redox homeostasis	2.08E-03
45	GO:0042761: very long-chain fatty acid biosynthetic process	2.22E-03
46	GO:0008202: steroid metabolic process	2.22E-03
47	GO:0010629: negative regulation of gene expression	2.46E-03
48	GO:0009688: abscisic acid biosynthetic process	2.46E-03
49	GO:0006629: lipid metabolic process	2.70E-03
50	GO:0009698: phenylpropanoid metabolic process	2.71E-03
51	GO:0043085: positive regulation of catalytic activity	2.71E-03
52	GO:0030148: sphingolipid biosynthetic process	2.71E-03
53	GO:0016024: CDP-diacylglycerol biosynthetic process	2.97E-03
54	GO:0015706: nitrate transport	2.97E-03
55	GO:0009740: gibberellic acid mediated signaling pathway	3.12E-03
56	GO:0009742: brassinosteroid mediated signaling pathway	3.50E-03
57	GO:0009934: regulation of meristem structural organization	3.52E-03
58	GO:0009887: animal organ morphogenesis	3.52E-03
59	GO:0034976: response to endoplasmic reticulum stress	4.10E-03
60	GO:0006636: unsaturated fatty acid biosynthetic process	4.10E-03
61	GO:0051017: actin filament bundle assembly	4.40E-03
62	GO:0006289: nucleotide-excision repair	4.40E-03
63	GO:0006874: cellular calcium ion homeostasis	4.70E-03
64	GO:0009768: photosynthesis, light harvesting in photosystem I	4.70E-03
65	GO:0009269: response to desiccation	5.02E-03
66	GO:0009416: response to light stimulus	5.59E-03
67	GO:0009686: gibberellin biosynthetic process	5.67E-03
68	GO:0010150: leaf senescence	5.69E-03
69	GO:0010089: xylem development	6.01E-03
70	GO:0070417: cellular response to cold	6.35E-03
71	GO:0006662: glycerol ether metabolic process	7.06E-03
72	GO:0010182: sugar mediated signaling pathway	7.06E-03
73	GO:0007018: microtubule-based movement	7.42E-03
74	GO:0006468: protein phosphorylation	7.48E-03
75	GO:0009791: post-embryonic development	7.79E-03
76	GO:0008654: phospholipid biosynthetic process	7.79E-03
77	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.17E-03
78	GO:0009826: unidimensional cell growth	8.47E-03
79	GO:0010583: response to cyclopentenone	8.56E-03
80	GO:0016032: viral process	8.56E-03
81	GO:0010252: auxin homeostasis	9.34E-03
82	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.13E-02
83	GO:0016311: dephosphorylation	1.23E-02
84	GO:0018298: protein-chromophore linkage	1.27E-02
85	GO:0006811: ion transport	1.37E-02
86	GO:0010218: response to far red light	1.37E-02
87	GO:0007568: aging	1.41E-02
88	GO:0006869: lipid transport	1.44E-02
89	GO:0006865: amino acid transport	1.46E-02
90	GO:0009637: response to blue light	1.51E-02
91	GO:0034599: cellular response to oxidative stress	1.56E-02
92	GO:0006631: fatty acid metabolic process	1.70E-02
93	GO:0009926: auxin polar transport	1.80E-02
94	GO:0009644: response to high light intensity	1.91E-02
95	GO:0006364: rRNA processing	2.23E-02
96	GO:0006857: oligopeptide transport	2.34E-02
97	GO:0006417: regulation of translation	2.40E-02
98	GO:0009909: regulation of flower development	2.40E-02
99	GO:0006396: RNA processing	2.93E-02
100	GO:0007275: multicellular organism development	3.20E-02
101	GO:0009845: seed germination	3.56E-02
102	GO:0006413: translational initiation	4.02E-02
103	GO:0040008: regulation of growth	4.09E-02
104	GO:0007623: circadian rhythm	4.23E-02
105	GO:0010228: vegetative to reproductive phase transition of meristem	4.37E-02
106	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.58E-02
107	GO:0007166: cell surface receptor signaling pathway	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0034639: L-amino acid efflux transmembrane transporter activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
8	GO:0004462: lactoylglutathione lyase activity	1.59E-05
9	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	8.09E-05
10	GO:0052631: sphingolipid delta-8 desaturase activity	8.09E-05
11	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	8.09E-05
12	GO:0016868: intramolecular transferase activity, phosphotransferases	1.93E-04
13	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.93E-04
14	GO:0019172: glyoxalase III activity	1.93E-04
15	GO:0008728: GTP diphosphokinase activity	1.93E-04
16	GO:0004362: glutathione-disulfide reductase activity	1.93E-04
17	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.24E-04
18	GO:0019201: nucleotide kinase activity	4.66E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	4.66E-04
20	GO:0042936: dipeptide transporter activity	6.21E-04
21	GO:0004930: G-protein coupled receptor activity	6.21E-04
22	GO:0070628: proteasome binding	6.21E-04
23	GO:0008289: lipid binding	7.24E-04
24	GO:0051538: 3 iron, 4 sulfur cluster binding	7.86E-04
25	GO:0004605: phosphatidate cytidylyltransferase activity	9.59E-04
26	GO:0031593: polyubiquitin binding	9.59E-04
27	GO:0004017: adenylate kinase activity	1.14E-03
28	GO:0004602: glutathione peroxidase activity	1.14E-03
29	GO:0004672: protein kinase activity	1.25E-03
30	GO:0008142: oxysterol binding	1.76E-03
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.76E-03
32	GO:0043621: protein self-association	1.88E-03
33	GO:0071949: FAD binding	1.98E-03
34	GO:0005381: iron ion transmembrane transporter activity	2.22E-03
35	GO:0009672: auxin:proton symporter activity	2.22E-03
36	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.46E-03
37	GO:0008047: enzyme activator activity	2.46E-03
38	GO:0010329: auxin efflux transmembrane transporter activity	3.24E-03
39	GO:0008081: phosphoric diester hydrolase activity	3.24E-03
40	GO:0004022: alcohol dehydrogenase (NAD) activity	3.24E-03
41	GO:0005215: transporter activity	3.52E-03
42	GO:0005217: intracellular ligand-gated ion channel activity	3.81E-03
43	GO:0004970: ionotropic glutamate receptor activity	3.81E-03
44	GO:0004190: aspartic-type endopeptidase activity	3.81E-03
45	GO:0031409: pigment binding	4.10E-03
46	GO:0043130: ubiquitin binding	4.40E-03
47	GO:0005216: ion channel activity	4.70E-03
48	GO:0033612: receptor serine/threonine kinase binding	5.02E-03
49	GO:0003756: protein disulfide isomerase activity	6.01E-03
50	GO:0003727: single-stranded RNA binding	6.01E-03
51	GO:0047134: protein-disulfide reductase activity	6.35E-03
52	GO:0008536: Ran GTPase binding	7.06E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	7.42E-03
54	GO:0019901: protein kinase binding	7.79E-03
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.94E-03
56	GO:0051015: actin filament binding	8.94E-03
57	GO:0005524: ATP binding	9.20E-03
58	GO:0003684: damaged DNA binding	9.34E-03
59	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.75E-03
60	GO:0016168: chlorophyll binding	1.10E-02
61	GO:0003993: acid phosphatase activity	1.56E-02
62	GO:0050661: NADP binding	1.65E-02
63	GO:0004185: serine-type carboxypeptidase activity	1.80E-02
64	GO:0051537: 2 iron, 2 sulfur cluster binding	1.91E-02
65	GO:0035091: phosphatidylinositol binding	1.91E-02
66	GO:0016298: lipase activity	2.29E-02
67	GO:0003777: microtubule motor activity	2.40E-02
68	GO:0015171: amino acid transmembrane transporter activity	2.40E-02
69	GO:0016874: ligase activity	2.75E-02
70	GO:0003779: actin binding	2.81E-02
71	GO:0015035: protein disulfide oxidoreductase activity	2.93E-02
72	GO:0004674: protein serine/threonine kinase activity	3.31E-02
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.43E-02
74	GO:0016829: lyase activity	3.56E-02
75	GO:0004252: serine-type endopeptidase activity	3.62E-02
76	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.02E-02
77	GO:0008017: microtubule binding	4.37E-02
78	GO:0003743: translation initiation factor activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	5.53E-08
3	GO:0009534: chloroplast thylakoid	1.70E-07
4	GO:0009535: chloroplast thylakoid membrane	2.38E-07
5	GO:0009570: chloroplast stroma	4.78E-07
6	GO:0009941: chloroplast envelope	4.13E-05
7	GO:0032432: actin filament bundle	4.66E-04
8	GO:0009517: PSII associated light-harvesting complex II	6.21E-04
9	GO:0030660: Golgi-associated vesicle membrane	6.21E-04
10	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.21E-04
11	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.54E-03
12	GO:0031977: thylakoid lumen	1.61E-03
13	GO:0031969: chloroplast membrane	1.65E-03
14	GO:0005765: lysosomal membrane	2.71E-03
15	GO:0005884: actin filament	2.71E-03
16	GO:0016021: integral component of membrane	2.84E-03
17	GO:0009706: chloroplast inner membrane	3.31E-03
18	GO:0030076: light-harvesting complex	3.81E-03
19	GO:0010287: plastoglobule	3.91E-03
20	GO:0009543: chloroplast thylakoid lumen	4.13E-03
21	GO:0042651: thylakoid membrane	4.70E-03
22	GO:0005871: kinesin complex	6.35E-03
23	GO:0009579: thylakoid	7.01E-03
24	GO:0009522: photosystem I	7.42E-03
25	GO:0009523: photosystem II	7.79E-03
26	GO:0000325: plant-type vacuole	1.41E-02
27	GO:0005783: endoplasmic reticulum	1.90E-02
28	GO:0005789: endoplasmic reticulum membrane	2.34E-02
29	GO:0010008: endosome membrane	2.57E-02
30	GO:0005886: plasma membrane	2.68E-02
31	GO:0005623: cell	3.43E-02