GO Enrichment Analysis of Co-expressed Genes with
AT3G54690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0009416: response to light stimulus | 3.93E-06 |
| 3 | GO:0010411: xyloglucan metabolic process | 2.72E-05 |
| 4 | GO:0071555: cell wall organization | 2.81E-05 |
| 5 | GO:0048829: root cap development | 5.04E-05 |
| 6 | GO:0033481: galacturonate biosynthetic process | 5.34E-05 |
| 7 | GO:0042371: vitamin K biosynthetic process | 5.34E-05 |
| 8 | GO:0046520: sphingoid biosynthetic process | 5.34E-05 |
| 9 | GO:0000038: very long-chain fatty acid metabolic process | 5.99E-05 |
| 10 | GO:0042546: cell wall biogenesis | 7.29E-05 |
| 11 | GO:0001736: establishment of planar polarity | 1.30E-04 |
| 12 | GO:0003333: amino acid transmembrane transport | 1.67E-04 |
| 13 | GO:0015840: urea transport | 2.22E-04 |
| 14 | GO:0015714: phosphoenolpyruvate transport | 2.22E-04 |
| 15 | GO:0042335: cuticle development | 2.60E-04 |
| 16 | GO:0015689: molybdate ion transport | 4.35E-04 |
| 17 | GO:0006085: acetyl-CoA biosynthetic process | 4.35E-04 |
| 18 | GO:0015713: phosphoglycerate transport | 4.35E-04 |
| 19 | GO:0031122: cytoplasmic microtubule organization | 4.35E-04 |
| 20 | GO:0010405: arabinogalactan protein metabolic process | 6.76E-04 |
| 21 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 6.76E-04 |
| 22 | GO:0009913: epidermal cell differentiation | 6.76E-04 |
| 23 | GO:0009834: plant-type secondary cell wall biogenesis | 7.10E-04 |
| 24 | GO:0006865: amino acid transport | 7.77E-04 |
| 25 | GO:0006694: steroid biosynthetic process | 8.05E-04 |
| 26 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 8.74E-04 |
| 27 | GO:0030497: fatty acid elongation | 9.40E-04 |
| 28 | GO:0050829: defense response to Gram-negative bacterium | 9.40E-04 |
| 29 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.08E-03 |
| 30 | GO:0008610: lipid biosynthetic process | 1.08E-03 |
| 31 | GO:0030091: protein repair | 1.08E-03 |
| 32 | GO:0009808: lignin metabolic process | 1.23E-03 |
| 33 | GO:0009827: plant-type cell wall modification | 1.23E-03 |
| 34 | GO:0016042: lipid catabolic process | 1.31E-03 |
| 35 | GO:0006857: oligopeptide transport | 1.46E-03 |
| 36 | GO:0019538: protein metabolic process | 1.71E-03 |
| 37 | GO:0048765: root hair cell differentiation | 1.88E-03 |
| 38 | GO:0010229: inflorescence development | 2.25E-03 |
| 39 | GO:0009718: anthocyanin-containing compound biosynthetic process | 2.25E-03 |
| 40 | GO:0009725: response to hormone | 2.25E-03 |
| 41 | GO:0048467: gynoecium development | 2.43E-03 |
| 42 | GO:0010143: cutin biosynthetic process | 2.43E-03 |
| 43 | GO:0009225: nucleotide-sugar metabolic process | 2.63E-03 |
| 44 | GO:0006833: water transport | 2.83E-03 |
| 45 | GO:0010025: wax biosynthetic process | 2.83E-03 |
| 46 | GO:0042023: DNA endoreduplication | 2.83E-03 |
| 47 | GO:0006633: fatty acid biosynthetic process | 3.01E-03 |
| 48 | GO:0006487: protein N-linked glycosylation | 3.03E-03 |
| 49 | GO:0016998: cell wall macromolecule catabolic process | 3.46E-03 |
| 50 | GO:0030245: cellulose catabolic process | 3.68E-03 |
| 51 | GO:0019722: calcium-mediated signaling | 4.13E-03 |
| 52 | GO:0045489: pectin biosynthetic process | 4.84E-03 |
| 53 | GO:0009958: positive gravitropism | 4.84E-03 |
| 54 | GO:0016132: brassinosteroid biosynthetic process | 5.60E-03 |
| 55 | GO:0071554: cell wall organization or biogenesis | 5.60E-03 |
| 56 | GO:1901657: glycosyl compound metabolic process | 6.12E-03 |
| 57 | GO:0080167: response to karrikin | 6.31E-03 |
| 58 | GO:0010252: auxin homeostasis | 6.39E-03 |
| 59 | GO:0009414: response to water deprivation | 6.59E-03 |
| 60 | GO:0007267: cell-cell signaling | 6.66E-03 |
| 61 | GO:0016126: sterol biosynthetic process | 7.22E-03 |
| 62 | GO:0042128: nitrate assimilation | 7.79E-03 |
| 63 | GO:0015995: chlorophyll biosynthetic process | 8.09E-03 |
| 64 | GO:0030244: cellulose biosynthetic process | 8.68E-03 |
| 65 | GO:0010311: lateral root formation | 8.99E-03 |
| 66 | GO:0005975: carbohydrate metabolic process | 1.16E-02 |
| 67 | GO:0009926: auxin polar transport | 1.23E-02 |
| 68 | GO:0009744: response to sucrose | 1.23E-02 |
| 69 | GO:0009640: photomorphogenesis | 1.23E-02 |
| 70 | GO:0008283: cell proliferation | 1.23E-02 |
| 71 | GO:0008643: carbohydrate transport | 1.30E-02 |
| 72 | GO:0009734: auxin-activated signaling pathway | 1.31E-02 |
| 73 | GO:0042538: hyperosmotic salinity response | 1.44E-02 |
| 74 | GO:0009624: response to nematode | 1.94E-02 |
| 75 | GO:0007623: circadian rhythm | 2.87E-02 |
| 76 | GO:0006979: response to oxidative stress | 3.38E-02 |
| 77 | GO:0009826: unidimensional cell growth | 3.81E-02 |
| 78 | GO:0009723: response to ethylene | 4.34E-02 |
| 79 | GO:0009409: response to cold | 4.53E-02 |
| 80 | GO:0006810: transport | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 3 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 5.32E-07 |
| 4 | GO:0010328: auxin influx transmembrane transporter activity | 3.07E-06 |
| 5 | GO:0052689: carboxylic ester hydrolase activity | 6.99E-06 |
| 6 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.12E-05 |
| 7 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.72E-05 |
| 8 | GO:0000170: sphingosine hydroxylase activity | 5.34E-05 |
| 9 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 5.34E-05 |
| 10 | GO:0008568: microtubule-severing ATPase activity | 5.34E-05 |
| 11 | GO:0015200: methylammonium transmembrane transporter activity | 5.34E-05 |
| 12 | GO:0015293: symporter activity | 8.19E-05 |
| 13 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.21E-04 |
| 14 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.21E-04 |
| 15 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.21E-04 |
| 16 | GO:0042284: sphingolipid delta-4 desaturase activity | 1.30E-04 |
| 17 | GO:0050734: hydroxycinnamoyltransferase activity | 2.22E-04 |
| 18 | GO:0001872: (1->3)-beta-D-glucan binding | 3.25E-04 |
| 19 | GO:0003878: ATP citrate synthase activity | 3.25E-04 |
| 20 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 3.25E-04 |
| 21 | GO:0015204: urea transmembrane transporter activity | 4.35E-04 |
| 22 | GO:0015120: phosphoglycerate transmembrane transporter activity | 4.35E-04 |
| 23 | GO:0010011: auxin binding | 4.35E-04 |
| 24 | GO:0052793: pectin acetylesterase activity | 4.35E-04 |
| 25 | GO:0004506: squalene monooxygenase activity | 4.35E-04 |
| 26 | GO:0015098: molybdate ion transmembrane transporter activity | 4.35E-04 |
| 27 | GO:0050378: UDP-glucuronate 4-epimerase activity | 4.35E-04 |
| 28 | GO:0016413: O-acetyltransferase activity | 4.73E-04 |
| 29 | GO:0009922: fatty acid elongase activity | 5.52E-04 |
| 30 | GO:0016788: hydrolase activity, acting on ester bonds | 6.58E-04 |
| 31 | GO:0008519: ammonium transmembrane transporter activity | 6.76E-04 |
| 32 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 6.76E-04 |
| 33 | GO:0035673: oligopeptide transmembrane transporter activity | 6.76E-04 |
| 34 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 8.05E-04 |
| 35 | GO:0004871: signal transducer activity | 1.11E-03 |
| 36 | GO:0015171: amino acid transmembrane transporter activity | 1.51E-03 |
| 37 | GO:0005215: transporter activity | 1.52E-03 |
| 38 | GO:0016746: transferase activity, transferring acyl groups | 1.99E-03 |
| 39 | GO:0015198: oligopeptide transporter activity | 2.06E-03 |
| 40 | GO:0004565: beta-galactosidase activity | 2.25E-03 |
| 41 | GO:0008810: cellulase activity | 3.90E-03 |
| 42 | GO:0008514: organic anion transmembrane transporter activity | 4.13E-03 |
| 43 | GO:0004872: receptor activity | 5.34E-03 |
| 44 | GO:0050660: flavin adenine dinucleotide binding | 5.89E-03 |
| 45 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 6.66E-03 |
| 46 | GO:0015250: water channel activity | 7.22E-03 |
| 47 | GO:0003824: catalytic activity | 7.65E-03 |
| 48 | GO:0008375: acetylglucosaminyltransferase activity | 7.79E-03 |
| 49 | GO:0102483: scopolin beta-glucosidase activity | 8.09E-03 |
| 50 | GO:0030247: polysaccharide binding | 8.09E-03 |
| 51 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 9.61E-03 |
| 52 | GO:0008422: beta-glucosidase activity | 1.09E-02 |
| 53 | GO:0004672: protein kinase activity | 1.11E-02 |
| 54 | GO:0003690: double-stranded DNA binding | 1.55E-02 |
| 55 | GO:0030599: pectinesterase activity | 1.86E-02 |
| 56 | GO:0030246: carbohydrate binding | 2.23E-02 |
| 57 | GO:0016758: transferase activity, transferring hexosyl groups | 2.24E-02 |
| 58 | GO:0015297: antiporter activity | 2.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048046: apoplast | 1.54E-07 |
| 2 | GO:0005886: plasma membrane | 4.44E-07 |
| 3 | GO:0005618: cell wall | 2.19E-05 |
| 4 | GO:0005576: extracellular region | 9.09E-05 |
| 5 | GO:0005794: Golgi apparatus | 1.14E-04 |
| 6 | GO:0016021: integral component of membrane | 2.75E-04 |
| 7 | GO:0009346: citrate lyase complex | 3.25E-04 |
| 8 | GO:0031225: anchored component of membrane | 8.85E-04 |
| 9 | GO:0009986: cell surface | 9.40E-04 |
| 10 | GO:0042807: central vacuole | 9.40E-04 |
| 11 | GO:0005768: endosome | 1.11E-03 |
| 12 | GO:0000326: protein storage vacuole | 1.23E-03 |
| 13 | GO:0009505: plant-type cell wall | 1.83E-03 |
| 14 | GO:0009506: plasmodesma | 2.22E-03 |
| 15 | GO:0046658: anchored component of plasma membrane | 4.36E-03 |
| 16 | GO:0005802: trans-Golgi network | 5.05E-03 |
| 17 | GO:0032580: Golgi cisterna membrane | 6.39E-03 |
| 18 | GO:0016020: membrane | 7.16E-03 |
| 19 | GO:0005783: endoplasmic reticulum | 7.23E-03 |
| 20 | GO:0005789: endoplasmic reticulum membrane | 1.17E-02 |
| 21 | GO:0005887: integral component of plasma membrane | 1.27E-02 |
| 22 | GO:0009705: plant-type vacuole membrane | 2.87E-02 |
| 23 | GO:0031969: chloroplast membrane | 4.56E-02 |