Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009661: chromoplast organization0.00E+00
2GO:1902171: regulation of tocopherol cyclase activity0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
5GO:0050821: protein stabilization1.36E-06
6GO:0046467: membrane lipid biosynthetic process9.64E-06
7GO:1904143: positive regulation of carotenoid biosynthetic process2.58E-05
8GO:0042548: regulation of photosynthesis, light reaction2.58E-05
9GO:0010363: regulation of plant-type hypersensitive response9.96E-05
10GO:0010114: response to red light1.23E-04
11GO:0009640: photomorphogenesis1.23E-04
12GO:0016120: carotene biosynthetic process1.30E-04
13GO:0006655: phosphatidylglycerol biosynthetic process1.63E-04
14GO:0009643: photosynthetic acclimation1.63E-04
15GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.63E-04
16GO:0009228: thiamine biosynthetic process1.63E-04
17GO:0080186: developmental vegetative growth2.34E-04
18GO:0009231: riboflavin biosynthetic process2.72E-04
19GO:0015996: chlorophyll catabolic process3.11E-04
20GO:0009657: plastid organization3.11E-04
21GO:0098656: anion transmembrane transport3.51E-04
22GO:0048507: meristem development3.51E-04
23GO:0043067: regulation of programmed cell death3.93E-04
24GO:0016024: CDP-diacylglycerol biosynthetic process5.23E-04
25GO:0034976: response to endoplasmic reticulum stress7.09E-04
26GO:0009768: photosynthesis, light harvesting in photosystem I8.07E-04
27GO:0016114: terpenoid biosynthetic process8.59E-04
28GO:0009814: defense response, incompatible interaction9.08E-04
29GO:0010305: leaf vascular tissue pattern formation1.18E-03
30GO:0008654: phospholipid biosynthetic process1.29E-03
31GO:0015995: chlorophyll biosynthetic process1.92E-03
32GO:0018298: protein-chromophore linkage2.05E-03
33GO:0010218: response to far red light2.19E-03
34GO:0007568: aging2.26E-03
35GO:0009910: negative regulation of flower development2.26E-03
36GO:0009637: response to blue light2.40E-03
37GO:0034599: cellular response to oxidative stress2.48E-03
38GO:0006364: rRNA processing3.49E-03
39GO:0009585: red, far-red light phototransduction3.49E-03
40GO:0006417: regulation of translation3.74E-03
41GO:0006396: RNA processing4.52E-03
42GO:0009790: embryo development5.75E-03
43GO:0006468: protein phosphorylation5.85E-03
44GO:0007623: circadian rhythm6.45E-03
45GO:0042254: ribosome biogenesis8.86E-03
46GO:0015979: photosynthesis1.12E-02
47GO:0045454: cell redox homeostasis1.15E-02
48GO:0006629: lipid metabolic process1.34E-02
49GO:0006397: mRNA processing1.38E-02
50GO:0048364: root development1.38E-02
51GO:0008152: metabolic process1.43E-02
52GO:0009908: flower development1.87E-02
53GO:0006457: protein folding2.42E-02
54GO:0006810: transport4.38E-02
RankGO TermAdjusted P value
1GO:0051743: red chlorophyll catabolite reductase activity0.00E+00
2GO:0019172: glyoxalase III activity2.58E-05
3GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity2.58E-05
4GO:0016805: dipeptidase activity4.69E-05
5GO:0004180: carboxypeptidase activity4.69E-05
6GO:0043621: protein self-association1.33E-04
7GO:0004462: lactoylglutathione lyase activity1.63E-04
8GO:0004605: phosphatidate cytidylyltransferase activity1.63E-04
9GO:0102425: myricetin 3-O-glucosyltransferase activity2.34E-04
10GO:0102360: daphnetin 3-O-glucosyltransferase activity2.34E-04
11GO:0047893: flavonol 3-O-glucosyltransferase activity2.72E-04
12GO:0005315: inorganic phosphate transmembrane transporter activity5.68E-04
13GO:0031409: pigment binding7.09E-04
14GO:0035251: UDP-glucosyltransferase activity8.59E-04
15GO:0003756: protein disulfide isomerase activity1.01E-03
16GO:0003727: single-stranded RNA binding1.01E-03
17GO:0016791: phosphatase activity1.53E-03
18GO:0016168: chlorophyll binding1.78E-03
19GO:0016298: lipase activity3.57E-03
20GO:0080043: quercetin 3-O-glucosyltransferase activity4.17E-03
21GO:0080044: quercetin 7-O-glucosyltransferase activity4.17E-03
22GO:0004672: protein kinase activity5.81E-03
23GO:0016787: hydrolase activity8.47E-03
24GO:0046872: metal ion binding1.10E-02
25GO:0004871: signal transducer activity1.19E-02
26GO:0005515: protein binding1.87E-02
27GO:0005215: transporter activity3.58E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast4.05E-06
2GO:0031969: chloroplast membrane4.33E-05
3GO:0009941: chloroplast envelope5.69E-05
4GO:0009535: chloroplast thylakoid membrane1.48E-04
5GO:0010287: plastoglobule2.91E-04
6GO:0030076: light-harvesting complex6.61E-04
7GO:0042651: thylakoid membrane8.07E-04
8GO:0009522: photosystem I1.23E-03
9GO:0009523: photosystem II1.29E-03
10GO:0009534: chloroplast thylakoid2.38E-03
11GO:0009570: chloroplast stroma4.75E-03
12GO:0009536: plastid4.85E-03
13GO:0005789: endoplasmic reticulum membrane6.04E-03
14GO:0016021: integral component of membrane1.41E-02
15GO:0043231: intracellular membrane-bounded organelle1.43E-02
16GO:0016020: membrane1.94E-02
17GO:0009579: thylakoid2.29E-02
18GO:0005783: endoplasmic reticulum2.78E-02
Gene type



Gene DE type