co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
3	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
4	GO:0019484: beta-alanine catabolic process	0.00E+00
5	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
6	GO:0033587: shikimate biosynthetic process	0.00E+00
7	GO:0006182: cGMP biosynthetic process	0.00E+00
8	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
9	GO:0000162: tryptophan biosynthetic process	2.35E-05
10	GO:0006468: protein phosphorylation	2.44E-05
11	GO:0046686: response to cadmium ion	2.51E-05
12	GO:0007292: female gamete generation	1.60E-04
13	GO:0009623: response to parasitic fungus	1.60E-04
14	GO:0051245: negative regulation of cellular defense response	1.60E-04
15	GO:1990641: response to iron ion starvation	1.60E-04
16	GO:1901183: positive regulation of camalexin biosynthetic process	1.60E-04
17	GO:0009865: pollen tube adhesion	1.60E-04
18	GO:0006540: glutamate decarboxylation to succinate	1.60E-04
19	GO:0035266: meristem growth	1.60E-04
20	GO:0009450: gamma-aminobutyric acid catabolic process	1.60E-04
21	GO:0008202: steroid metabolic process	2.16E-04
22	GO:0043069: negative regulation of programmed cell death	2.55E-04
23	GO:0010033: response to organic substance	3.65E-04
24	GO:0051788: response to misfolded protein	3.65E-04
25	GO:0006101: citrate metabolic process	3.65E-04
26	GO:0015865: purine nucleotide transport	3.65E-04
27	GO:0030187: melatonin biosynthetic process	3.65E-04
28	GO:0051258: protein polymerization	3.65E-04
29	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.65E-04
30	GO:0060919: auxin influx	3.65E-04
31	GO:0019441: tryptophan catabolic process to kynurenine	3.65E-04
32	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	3.65E-04
33	GO:0010150: leaf senescence	3.72E-04
34	GO:0006099: tricarboxylic acid cycle	4.04E-04
35	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	5.97E-04
36	GO:0060968: regulation of gene silencing	5.97E-04
37	GO:0016998: cell wall macromolecule catabolic process	7.30E-04
38	GO:0071456: cellular response to hypoxia	7.98E-04
39	GO:0046902: regulation of mitochondrial membrane permeability	8.53E-04
40	GO:0009399: nitrogen fixation	8.53E-04
41	GO:0006612: protein targeting to membrane	8.53E-04
42	GO:0009113: purine nucleobase biosynthetic process	8.53E-04
43	GO:0043967: histone H4 acetylation	8.53E-04
44	GO:0019438: aromatic compound biosynthetic process	8.53E-04
45	GO:0006624: vacuolar protein processing	8.53E-04
46	GO:0048194: Golgi vesicle budding	8.53E-04
47	GO:0006020: inositol metabolic process	8.53E-04
48	GO:0071215: cellular response to abscisic acid stimulus	8.67E-04
49	GO:0009626: plant-type hypersensitive response	1.02E-03
50	GO:1902584: positive regulation of response to water deprivation	1.13E-03
51	GO:0006536: glutamate metabolic process	1.13E-03
52	GO:0010363: regulation of plant-type hypersensitive response	1.13E-03
53	GO:0010600: regulation of auxin biosynthetic process	1.13E-03
54	GO:0006542: glutamine biosynthetic process	1.13E-03
55	GO:0009851: auxin biosynthetic process	1.35E-03
56	GO:0000304: response to singlet oxygen	1.43E-03
57	GO:0006635: fatty acid beta-oxidation	1.44E-03
58	GO:0006869: lipid transport	1.51E-03
59	GO:0010252: auxin homeostasis	1.74E-03
60	GO:0048232: male gamete generation	1.76E-03
61	GO:0043248: proteasome assembly	1.76E-03
62	GO:0009751: response to salicylic acid	1.76E-03
63	GO:0010315: auxin efflux	1.76E-03
64	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.76E-03
65	GO:0048827: phyllome development	1.76E-03
66	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.76E-03
67	GO:0001666: response to hypoxia	2.07E-03
68	GO:0046470: phosphatidylcholine metabolic process	2.48E-03
69	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.48E-03
70	GO:0071669: plant-type cell wall organization or biogenesis	2.48E-03
71	GO:0070370: cellular heat acclimation	2.48E-03
72	GO:0009396: folic acid-containing compound biosynthetic process	2.48E-03
73	GO:0008219: cell death	2.69E-03
74	GO:0007166: cell surface receptor signaling pathway	2.80E-03
75	GO:0010311: lateral root formation	2.82E-03
76	GO:0030091: protein repair	2.88E-03
77	GO:0006605: protein targeting	2.88E-03
78	GO:0010078: maintenance of root meristem identity	2.88E-03
79	GO:0006102: isocitrate metabolic process	2.88E-03
80	GO:0016559: peroxisome fission	2.88E-03
81	GO:0010120: camalexin biosynthetic process	3.29E-03
82	GO:0030968: endoplasmic reticulum unfolded protein response	3.29E-03
83	GO:0009808: lignin metabolic process	3.29E-03
84	GO:0045087: innate immune response	3.40E-03
85	GO:0007338: single fertilization	3.72E-03
86	GO:0006098: pentose-phosphate shunt	3.72E-03
87	GO:0009733: response to auxin	4.11E-03
88	GO:0035999: tetrahydrofolate interconversion	4.17E-03
89	GO:0051555: flavonol biosynthetic process	4.64E-03
90	GO:0007064: mitotic sister chromatid cohesion	4.64E-03
91	GO:0006535: cysteine biosynthetic process from serine	4.64E-03
92	GO:0006032: chitin catabolic process	4.64E-03
93	GO:0048829: root cap development	4.64E-03
94	GO:0010015: root morphogenesis	5.12E-03
95	GO:0009698: phenylpropanoid metabolic process	5.12E-03
96	GO:0009682: induced systemic resistance	5.12E-03
97	GO:0052544: defense response by callose deposition in cell wall	5.12E-03
98	GO:0000272: polysaccharide catabolic process	5.12E-03
99	GO:0006378: mRNA polyadenylation	5.12E-03
100	GO:0012501: programmed cell death	5.62E-03
101	GO:0071365: cellular response to auxin stimulus	5.62E-03
102	GO:0000266: mitochondrial fission	5.62E-03
103	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.64E-03
104	GO:0009809: lignin biosynthetic process	5.88E-03
105	GO:0006813: potassium ion transport	5.88E-03
106	GO:0055046: microgametogenesis	6.14E-03
107	GO:0034605: cellular response to heat	6.67E-03
108	GO:0006541: glutamine metabolic process	6.67E-03
109	GO:0009933: meristem structural organization	6.67E-03
110	GO:0010540: basipetal auxin transport	6.67E-03
111	GO:0048367: shoot system development	7.18E-03
112	GO:0009969: xyloglucan biosynthetic process	7.22E-03
113	GO:0007031: peroxisome organization	7.22E-03
114	GO:0005985: sucrose metabolic process	7.22E-03
115	GO:0090351: seedling development	7.22E-03
116	GO:0046854: phosphatidylinositol phosphorylation	7.22E-03
117	GO:0050832: defense response to fungus	7.38E-03
118	GO:0019344: cysteine biosynthetic process	8.38E-03
119	GO:0009863: salicylic acid mediated signaling pathway	8.38E-03
120	GO:0006338: chromatin remodeling	8.38E-03
121	GO:0048278: vesicle docking	9.59E-03
122	GO:0031408: oxylipin biosynthetic process	9.59E-03
123	GO:0009814: defense response, incompatible interaction	1.02E-02
124	GO:0035428: hexose transmembrane transport	1.02E-02
125	GO:0030433: ubiquitin-dependent ERAD pathway	1.02E-02
126	GO:0071369: cellular response to ethylene stimulus	1.09E-02
127	GO:0009561: megagametogenesis	1.15E-02
128	GO:0042147: retrograde transport, endosome to Golgi	1.22E-02
129	GO:0070417: cellular response to cold	1.22E-02
130	GO:0042742: defense response to bacterium	1.26E-02
131	GO:0042631: cellular response to water deprivation	1.29E-02
132	GO:0000271: polysaccharide biosynthetic process	1.29E-02
133	GO:0006885: regulation of pH	1.36E-02
134	GO:0010154: fruit development	1.36E-02
135	GO:0046323: glucose import	1.36E-02
136	GO:0048544: recognition of pollen	1.43E-02
137	GO:0061025: membrane fusion	1.43E-02
138	GO:0010183: pollen tube guidance	1.50E-02
139	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.58E-02
140	GO:0010583: response to cyclopentenone	1.65E-02
141	GO:0009630: gravitropism	1.65E-02
142	GO:0010468: regulation of gene expression	1.73E-02
143	GO:0009617: response to bacterium	1.73E-02
144	GO:0009567: double fertilization forming a zygote and endosperm	1.81E-02
145	GO:0006914: autophagy	1.81E-02
146	GO:0055114: oxidation-reduction process	1.82E-02
147	GO:0009611: response to wounding	1.89E-02
148	GO:0071805: potassium ion transmembrane transport	1.89E-02
149	GO:0051607: defense response to virus	1.97E-02
150	GO:0009816: defense response to bacterium, incompatible interaction	2.13E-02
151	GO:0009607: response to biotic stimulus	2.13E-02
152	GO:0042128: nitrate assimilation	2.22E-02
153	GO:0006906: vesicle fusion	2.22E-02
154	GO:0009627: systemic acquired resistance	2.22E-02
155	GO:0048573: photoperiodism, flowering	2.30E-02
156	GO:0006950: response to stress	2.30E-02
157	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
158	GO:0030244: cellulose biosynthetic process	2.47E-02
159	GO:0055085: transmembrane transport	2.48E-02
160	GO:0009832: plant-type cell wall biogenesis	2.56E-02
161	GO:0048767: root hair elongation	2.56E-02
162	GO:0009723: response to ethylene	2.60E-02
163	GO:0006499: N-terminal protein myristoylation	2.65E-02
164	GO:0009631: cold acclimation	2.74E-02
165	GO:0010043: response to zinc ion	2.74E-02
166	GO:0080167: response to karrikin	2.79E-02
167	GO:0009867: jasmonic acid mediated signaling pathway	2.93E-02
168	GO:0044550: secondary metabolite biosynthetic process	3.03E-02
169	GO:0006839: mitochondrial transport	3.21E-02
170	GO:0006887: exocytosis	3.31E-02
171	GO:0009965: leaf morphogenesis	3.81E-02
172	GO:0032259: methylation	3.94E-02
173	GO:0031347: regulation of defense response	4.02E-02
174	GO:0006629: lipid metabolic process	4.11E-02
175	GO:0006812: cation transport	4.12E-02
176	GO:0048364: root development	4.28E-02
177	GO:0051603: proteolysis involved in cellular protein catabolic process	4.44E-02
178	GO:0006979: response to oxidative stress	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0047763: caffeate O-methyltransferase activity	0.00E+00
2	GO:0030744: luteolin O-methyltransferase activity	0.00E+00
3	GO:0030755: quercetin 3-O-methyltransferase activity	0.00E+00
4	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
5	GO:0033799: myricetin 3'-O-methyltransferase activity	0.00E+00
6	GO:0005524: ATP binding	2.12E-06
7	GO:0004383: guanylate cyclase activity	4.66E-06
8	GO:0010279: indole-3-acetic acid amido synthetase activity	2.01E-05
9	GO:0004834: tryptophan synthase activity	2.01E-05
10	GO:0016301: kinase activity	6.23E-05
11	GO:0004674: protein serine/threonine kinase activity	6.86E-05
12	GO:0008142: oxysterol binding	1.47E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.60E-04
14	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.60E-04
15	GO:1990188: euchromatin binding	1.60E-04
16	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.60E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	1.60E-04
18	GO:0017096: acetylserotonin O-methyltransferase activity	1.60E-04
19	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.60E-04
20	GO:0071949: FAD binding	1.80E-04
21	GO:0047372: acylglycerol lipase activity	2.97E-04
22	GO:0003994: aconitate hydratase activity	3.65E-04
23	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	3.65E-04
24	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	3.65E-04
25	GO:0032934: sterol binding	3.65E-04
26	GO:0004061: arylformamidase activity	3.65E-04
27	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.65E-04
28	GO:0004329: formate-tetrahydrofolate ligase activity	3.65E-04
29	GO:0004142: diacylglycerol cholinephosphotransferase activity	3.65E-04
30	GO:0003958: NADPH-hemoprotein reductase activity	3.65E-04
31	GO:0005047: signal recognition particle binding	5.97E-04
32	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.97E-04
33	GO:0016595: glutamate binding	5.97E-04
34	GO:0004049: anthranilate synthase activity	5.97E-04
35	GO:0001653: peptide receptor activity	8.53E-04
36	GO:0048027: mRNA 5'-UTR binding	8.53E-04
37	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	8.53E-04
38	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	8.53E-04
39	GO:0004108: citrate (Si)-synthase activity	8.53E-04
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.13E-03
41	GO:0010328: auxin influx transmembrane transporter activity	1.13E-03
42	GO:0003995: acyl-CoA dehydrogenase activity	1.13E-03
43	GO:0010181: FMN binding	1.26E-03
44	GO:0003997: acyl-CoA oxidase activity	1.43E-03
45	GO:0005471: ATP:ADP antiporter activity	1.43E-03
46	GO:0004356: glutamate-ammonia ligase activity	1.43E-03
47	GO:0036402: proteasome-activating ATPase activity	1.76E-03
48	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.11E-03
49	GO:0051753: mannan synthase activity	2.11E-03
50	GO:0004012: phospholipid-translocating ATPase activity	2.11E-03
51	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.11E-03
52	GO:0051020: GTPase binding	2.11E-03
53	GO:0004124: cysteine synthase activity	2.11E-03
54	GO:0030247: polysaccharide binding	2.43E-03
55	GO:0004620: phospholipase activity	2.48E-03
56	GO:0004033: aldo-keto reductase (NADP) activity	2.88E-03
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.20E-03
58	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.72E-03
59	GO:0004713: protein tyrosine kinase activity	4.64E-03
60	GO:0004568: chitinase activity	4.64E-03
61	GO:0008171: O-methyltransferase activity	4.64E-03
62	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.64E-03
63	GO:0050660: flavin adenine dinucleotide binding	4.95E-03
64	GO:0004521: endoribonuclease activity	5.62E-03
65	GO:0010329: auxin efflux transmembrane transporter activity	6.14E-03
66	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.14E-03
67	GO:0004022: alcohol dehydrogenase (NAD) activity	6.14E-03
68	GO:0004672: protein kinase activity	6.57E-03
69	GO:0004175: endopeptidase activity	6.67E-03
70	GO:0017025: TBP-class protein binding	7.22E-03
71	GO:0008061: chitin binding	7.22E-03
72	GO:0043130: ubiquitin binding	8.38E-03
73	GO:0043424: protein histidine kinase binding	8.97E-03
74	GO:0015079: potassium ion transmembrane transporter activity	8.97E-03
75	GO:0016760: cellulose synthase (UDP-forming) activity	1.09E-02
76	GO:0030170: pyridoxal phosphate binding	1.17E-02
77	GO:0015144: carbohydrate transmembrane transporter activity	1.26E-02
78	GO:0005451: monovalent cation:proton antiporter activity	1.29E-02
79	GO:0005351: sugar:proton symporter activity	1.42E-02
80	GO:0015299: solute:proton antiporter activity	1.43E-02
81	GO:0005355: glucose transmembrane transporter activity	1.43E-02
82	GO:0004197: cysteine-type endopeptidase activity	1.65E-02
83	GO:0015385: sodium:proton antiporter activity	1.73E-02
84	GO:0016759: cellulose synthase activity	1.81E-02
85	GO:0042802: identical protein binding	1.85E-02
86	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.39E-02
87	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.74E-02
88	GO:0050897: cobalt ion binding	2.74E-02
89	GO:0004497: monooxygenase activity	2.79E-02
90	GO:0005507: copper ion binding	2.86E-02
91	GO:0005516: calmodulin binding	3.07E-02
92	GO:0008422: beta-glucosidase activity	3.12E-02
93	GO:0000149: SNARE binding	3.12E-02
94	GO:0050661: NADP binding	3.21E-02
95	GO:0051539: 4 iron, 4 sulfur cluster binding	3.21E-02
96	GO:0004364: glutathione transferase activity	3.41E-02
97	GO:0005484: SNAP receptor activity	3.51E-02
98	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.60E-02
99	GO:0043621: protein self-association	3.71E-02
100	GO:0016787: hydrolase activity	3.88E-02
101	GO:0003924: GTPase activity	4.11E-02
102	GO:0016298: lipase activity	4.44E-02
103	GO:0015171: amino acid transmembrane transporter activity	4.66E-02
104	GO:0008234: cysteine-type peptidase activity	4.66E-02
105	GO:0031625: ubiquitin protein ligase binding	4.66E-02
106	GO:0045735: nutrient reservoir activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	6.21E-07
3	GO:0016021: integral component of membrane	7.08E-05
4	GO:0045252: oxoglutarate dehydrogenase complex	1.60E-04
5	GO:0005783: endoplasmic reticulum	2.39E-04
6	GO:0005950: anthranilate synthase complex	3.65E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.97E-04
8	GO:0009506: plasmodesma	6.50E-04
9	GO:0005849: mRNA cleavage factor complex	8.53E-04
10	GO:0000323: lytic vacuole	8.53E-04
11	GO:0005773: vacuole	1.01E-03
12	GO:0031597: cytosolic proteasome complex	2.11E-03
13	GO:0030173: integral component of Golgi membrane	2.11E-03
14	GO:0000123: histone acetyltransferase complex	2.48E-03
15	GO:0031595: nuclear proteasome complex	2.48E-03
16	GO:0009514: glyoxysome	3.29E-03
17	GO:0005779: integral component of peroxisomal membrane	3.29E-03
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.29E-03
19	GO:0005774: vacuolar membrane	3.30E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	4.17E-03
21	GO:0012505: endomembrane system	8.12E-03
22	GO:0005794: Golgi apparatus	9.49E-03
23	GO:0005770: late endosome	1.36E-02
24	GO:0005829: cytosol	1.50E-02
25	GO:0005778: peroxisomal membrane	1.89E-02
26	GO:0016020: membrane	2.17E-02
27	GO:0005777: peroxisome	2.19E-02
28	GO:0009707: chloroplast outer membrane	2.47E-02
29	GO:0031201: SNARE complex	3.31E-02
30	GO:0000502: proteasome complex	4.34E-02
31	GO:0010008: endosome membrane	4.99E-02