co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009664: plant-type cell wall organization	2.22E-08
2	GO:0018171: peptidyl-cysteine oxidation	2.25E-04
3	GO:0070483: detection of hypoxia	5.00E-04
4	GO:0071732: cellular response to nitric oxide	7.77E-04
5	GO:0071398: cellular response to fatty acid	8.13E-04
6	GO:0006424: glutamyl-tRNA aminoacylation	1.16E-03
7	GO:0032147: activation of protein kinase activity	1.16E-03
8	GO:0007043: cell-cell junction assembly	1.16E-03
9	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.35E-03
10	GO:0010023: proanthocyanidin biosynthetic process	1.54E-03
11	GO:0051365: cellular response to potassium ion starvation	1.54E-03
12	GO:0060236: regulation of mitotic spindle organization	1.54E-03
13	GO:0060918: auxin transport	2.43E-03
14	GO:0048235: pollen sperm cell differentiation	2.45E-03
15	GO:0071281: cellular response to iron ion	2.61E-03
16	GO:0010199: organ boundary specification between lateral organs and the meristem	2.91E-03
17	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.43E-03
18	GO:0010161: red light signaling pathway	3.43E-03
19	GO:0052543: callose deposition in cell wall	3.98E-03
20	GO:0010208: pollen wall assembly	4.56E-03
21	GO:0009827: plant-type cell wall modification	4.56E-03
22	GO:0098656: anion transmembrane transport	5.16E-03
23	GO:0010215: cellulose microfibril organization	6.45E-03
24	GO:0051026: chiasma assembly	6.45E-03
25	GO:0046274: lignin catabolic process	8.57E-03
26	GO:0009725: response to hormone	8.57E-03
27	GO:0010223: secondary shoot formation	9.33E-03
28	GO:0009736: cytokinin-activated signaling pathway	9.50E-03
29	GO:0009901: anther dehiscence	1.01E-02
30	GO:0019762: glucosinolate catabolic process	1.09E-02
31	GO:0042545: cell wall modification	1.32E-02
32	GO:0051260: protein homooligomerization	1.34E-02
33	GO:0007131: reciprocal meiotic recombination	1.43E-02
34	GO:0080092: regulation of pollen tube growth	1.43E-02
35	GO:0071369: cellular response to ethylene stimulus	1.53E-02
36	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.53E-02
37	GO:0009693: ethylene biosynthetic process	1.53E-02
38	GO:0006817: phosphate ion transport	1.62E-02
39	GO:0010089: xylem development	1.62E-02
40	GO:0010584: pollen exine formation	1.62E-02
41	GO:0010501: RNA secondary structure unwinding	1.81E-02
42	GO:0010051: xylem and phloem pattern formation	1.81E-02
43	GO:0042752: regulation of circadian rhythm	2.01E-02
44	GO:0009828: plant-type cell wall loosening	2.54E-02
45	GO:0019760: glucosinolate metabolic process	2.54E-02
46	GO:0010468: regulation of gene expression	2.80E-02
47	GO:0001666: response to hypoxia	2.88E-02
48	GO:0030154: cell differentiation	2.93E-02
49	GO:0006950: response to stress	3.24E-02
50	GO:0016049: cell growth	3.36E-02
51	GO:0000160: phosphorelay signal transduction system	3.61E-02
52	GO:0009813: flavonoid biosynthetic process	3.61E-02
53	GO:0010311: lateral root formation	3.61E-02
54	GO:0009834: plant-type secondary cell wall biogenesis	3.73E-02
55	GO:0009910: negative regulation of flower development	3.86E-02
56	GO:0010114: response to red light	4.93E-02
57	GO:0051707: response to other organism	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005199: structural constituent of cell wall	3.55E-09
2	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	5.75E-04
3	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	6.96E-04
4	GO:0017172: cysteine dioxygenase activity	1.16E-03
5	GO:0005319: lipid transporter activity	1.54E-03
6	GO:0015301: anion:anion antiporter activity	1.97E-03
7	GO:0005452: inorganic anion exchanger activity	1.97E-03
8	GO:0044212: transcription regulatory region DNA binding	2.25E-03
9	GO:0019137: thioglucosidase activity	2.43E-03
10	GO:0008429: phosphatidylethanolamine binding	2.43E-03
11	GO:0000156: phosphorelay response regulator activity	2.61E-03
12	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.95E-03
13	GO:0004143: diacylglycerol kinase activity	3.43E-03
14	GO:0003951: NAD+ kinase activity	4.56E-03
15	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.16E-03
16	GO:0003678: DNA helicase activity	5.16E-03
17	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.13E-03
18	GO:0052716: hydroquinone:oxygen oxidoreductase activity	7.84E-03
19	GO:0005315: inorganic phosphate transmembrane transporter activity	8.57E-03
20	GO:0015114: phosphate ion transmembrane transporter activity	8.57E-03
21	GO:0051119: sugar transmembrane transporter activity	1.01E-02
22	GO:0031418: L-ascorbic acid binding	1.17E-02
23	GO:0003964: RNA-directed DNA polymerase activity	1.34E-02
24	GO:0004707: MAP kinase activity	1.34E-02
25	GO:0022891: substrate-specific transmembrane transporter activity	1.53E-02
26	GO:0043565: sequence-specific DNA binding	2.14E-02
27	GO:0051213: dioxygenase activity	2.88E-02
28	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.05E-02
29	GO:0004004: ATP-dependent RNA helicase activity	3.24E-02
30	GO:0102483: scopolin beta-glucosidase activity	3.24E-02
31	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.36E-02
32	GO:0046982: protein heterodimerization activity	3.56E-02
33	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.12E-02
34	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.25E-02
35	GO:0008422: beta-glucosidase activity	4.39E-02
36	GO:0052689: carboxylic ester hydrolase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009530: primary cell wall	8.13E-04
2	GO:0090406: pollen tube	9.59E-04
3	GO:0048226: Casparian strip	3.98E-03
4	GO:0031225: anchored component of membrane	4.95E-03
5	GO:0016602: CCAAT-binding factor complex	8.57E-03
6	GO:0010319: stromule	2.65E-02
7	GO:0005788: endoplasmic reticulum lumen	3.00E-02
8	GO:0005874: microtubule	4.34E-02
9	GO:0005819: spindle	4.39E-02