Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
2GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
3GO:0016197: endosomal transport1.91E-06
4GO:0035542: regulation of SNARE complex assembly1.91E-06
5GO:0010345: suberin biosynthetic process3.75E-05
6GO:0010143: cutin biosynthetic process7.23E-05
7GO:0007033: vacuole organization7.90E-05
8GO:0010025: wax biosynthetic process8.58E-05
9GO:0008299: isoprenoid biosynthetic process9.96E-05
10GO:0030433: ubiquitin-dependent ERAD pathway1.14E-04
11GO:0042335: cuticle development1.45E-04
12GO:0010182: sugar mediated signaling pathway1.53E-04
13GO:0071281: cellular response to iron ion1.95E-04
14GO:0001666: response to hypoxia2.30E-04
15GO:0009817: defense response to fungus, incompatible interaction2.76E-04
16GO:0009723: response to ethylene1.21E-03
17GO:0006886: intracellular protein transport1.45E-03
18GO:0009873: ethylene-activated signaling pathway1.94E-03
19GO:0006511: ubiquitin-dependent protein catabolic process2.95E-03
20GO:0009414: response to water deprivation3.81E-03
21GO:0042742: defense response to bacterium3.87E-03
22GO:0006952: defense response1.28E-02
RankGO TermAdjusted P value
1GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway8.65E-06
2GO:0000976: transcription regulatory region sequence-specific DNA binding5.99E-05
3GO:0019706: protein-cysteine S-palmitoyltransferase activity1.07E-04
4GO:0008237: metallopeptidase activity2.12E-04
5GO:0003779: actin binding5.75E-04
6GO:0000166: nucleotide binding2.40E-03
7GO:0044212: transcription regulatory region DNA binding3.87E-03
8GO:0004842: ubiquitin-protein transferase activity4.83E-03
9GO:0008270: zinc ion binding3.78E-02
10GO:0046872: metal ion binding4.92E-02
RankGO TermAdjusted P value
1GO:0030897: HOPS complex1.91E-06
2GO:0005765: lysosomal membrane5.40E-05
3GO:0030176: integral component of endoplasmic reticulum membrane7.90E-05
4GO:0043234: protein complex8.58E-05
5GO:0031902: late endosome membrane3.64E-04
6GO:0009705: plant-type vacuole membrane8.35E-04
7GO:0005768: endosome3.60E-03
8GO:0000139: Golgi membrane4.76E-03
Gene type



Gene DE type