co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:0006412: translation	7.67E-17
3	GO:0042254: ribosome biogenesis	3.33E-11
4	GO:0045041: protein import into mitochondrial intermembrane space	3.35E-08
5	GO:0007005: mitochondrion organization	4.57E-07
6	GO:0042026: protein refolding	2.49E-06
7	GO:0006458: 'de novo' protein folding	2.49E-06
8	GO:0006626: protein targeting to mitochondrion	2.01E-05
9	GO:0000027: ribosomal large subunit assembly	3.49E-05
10	GO:0061077: chaperone-mediated protein folding	4.40E-05
11	GO:0046686: response to cadmium ion	4.49E-05
12	GO:0009735: response to cytokinin	4.81E-05
13	GO:0009967: positive regulation of signal transduction	5.37E-05
14	GO:0009220: pyrimidine ribonucleotide biosynthetic process	5.37E-05
15	GO:0010476: gibberellin mediated signaling pathway	9.50E-05
16	GO:0055074: calcium ion homeostasis	9.50E-05
17	GO:0006954: inflammatory response	9.50E-05
18	GO:0002181: cytoplasmic translation	9.50E-05
19	GO:0051131: chaperone-mediated protein complex assembly	1.42E-04
20	GO:0044205: 'de novo' UMP biosynthetic process	1.95E-04
21	GO:0008283: cell proliferation	3.27E-04
22	GO:0009965: leaf morphogenesis	3.67E-04
23	GO:0016444: somatic cell DNA recombination	3.73E-04
24	GO:0009955: adaxial/abaxial pattern specification	3.73E-04
25	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	4.37E-04
26	GO:0010015: root morphogenesis	8.71E-04
27	GO:0006913: nucleocytoplasmic transport	8.71E-04
28	GO:0006820: anion transport	9.50E-04
29	GO:0030150: protein import into mitochondrial matrix	1.38E-03
30	GO:0006334: nucleosome assembly	1.56E-03
31	GO:0071215: cellular response to abscisic acid stimulus	1.76E-03
32	GO:0009294: DNA mediated transformation	1.76E-03
33	GO:0000413: protein peptidyl-prolyl isomerization	2.07E-03
34	GO:0006342: chromatin silencing	2.17E-03
35	GO:0006520: cellular amino acid metabolic process	2.17E-03
36	GO:0009749: response to glucose	2.39E-03
37	GO:0080156: mitochondrial mRNA modification	2.50E-03
38	GO:0016049: cell growth	3.71E-03
39	GO:0006811: ion transport	4.10E-03
40	GO:0048527: lateral root development	4.24E-03
41	GO:0000724: double-strand break repair via homologous recombination	4.37E-03
42	GO:0006457: protein folding	6.48E-03
43	GO:0009651: response to salt stress	6.85E-03
44	GO:0006417: regulation of translation	7.07E-03
45	GO:0006414: translational elongation	7.47E-03
46	GO:0009845: seed germination	1.04E-02
47	GO:0016036: cellular response to phosphate starvation	1.18E-02
48	GO:0010228: vegetative to reproductive phase transition of meristem	1.28E-02
49	GO:0015031: protein transport	1.29E-02
50	GO:0009739: response to gibberellin	1.34E-02
51	GO:0009723: response to ethylene	1.87E-02
52	GO:0006281: DNA repair	2.59E-02
53	GO:0009408: response to heat	2.59E-02
54	GO:0051301: cell division	4.14E-02
55	GO:0055085: transmembrane transport	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0004070: aspartate carbamoyltransferase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003735: structural constituent of ribosome	1.02E-21
4	GO:0008097: 5S rRNA binding	3.21E-07
5	GO:0044183: protein binding involved in protein folding	1.44E-05
6	GO:0051082: unfolded protein binding	2.96E-05
7	GO:0003729: mRNA binding	4.05E-05
8	GO:0005078: MAP-kinase scaffold activity	5.37E-05
9	GO:0016743: carboxyl- or carbamoyltransferase activity	5.37E-05
10	GO:0032947: protein complex scaffold	9.50E-05
11	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.98E-04
12	GO:0015288: porin activity	5.05E-04
13	GO:0008308: voltage-gated anion channel activity	5.74E-04
14	GO:0005507: copper ion binding	9.62E-04
15	GO:0015266: protein channel activity	1.03E-03
16	GO:0016597: amino acid binding	3.08E-03
17	GO:0003746: translation elongation factor activity	4.51E-03
18	GO:0003697: single-stranded DNA binding	4.51E-03
19	GO:0003723: RNA binding	4.64E-03
20	GO:0042393: histone binding	4.93E-03
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.97E-03
22	GO:0019843: rRNA binding	9.85E-03
23	GO:0042802: identical protein binding	1.46E-02
24	GO:0005515: protein binding	1.47E-02
25	GO:0046982: protein heterodimerization activity	1.66E-02
26	GO:0004871: signal transducer activity	2.31E-02
27	GO:0003924: GTPase activity	2.59E-02
28	GO:0000166: nucleotide binding	3.90E-02
29	GO:0030246: carbohydrate binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	1.87E-18
2	GO:0005840: ribosome	3.54E-18
3	GO:0022625: cytosolic large ribosomal subunit	1.35E-16
4	GO:0005730: nucleolus	7.08E-12
5	GO:0005737: cytoplasm	1.09E-08
6	GO:0005774: vacuolar membrane	1.23E-07
7	GO:0005829: cytosol	1.79E-06
8	GO:0005773: vacuole	8.65E-06
9	GO:0022627: cytosolic small ribosomal subunit	1.04E-04
10	GO:0015934: large ribosomal subunit	2.30E-04
11	GO:0005886: plasma membrane	3.59E-04
12	GO:0005747: mitochondrial respiratory chain complex I	5.33E-04
13	GO:0046930: pore complex	5.74E-04
14	GO:0005742: mitochondrial outer membrane translocase complex	5.74E-04
15	GO:0009506: plasmodesma	6.14E-04
16	GO:0048471: perinuclear region of cytoplasm	8.71E-04
17	GO:0005758: mitochondrial intermembrane space	1.38E-03
18	GO:0005741: mitochondrial outer membrane	1.56E-03
19	GO:0000790: nuclear chromatin	1.96E-03
20	GO:0005743: mitochondrial inner membrane	2.65E-03
21	GO:0005739: mitochondrion	2.72E-03
22	GO:0016020: membrane	2.98E-03
23	GO:0005788: endoplasmic reticulum lumen	3.33E-03
24	GO:0000786: nucleosome	4.37E-03
25	GO:0009507: chloroplast	5.06E-03
26	GO:0005834: heterotrimeric G-protein complex	7.73E-03
27	GO:0005759: mitochondrial matrix	1.16E-02
28	GO:0005618: cell wall	4.03E-02