Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901259: chloroplast rRNA processing3.61E-08
2GO:0006431: methionyl-tRNA aminoacylation1.54E-06
3GO:0009662: etioplast organization4.37E-06
4GO:1904143: positive regulation of carotenoid biosynthetic process4.37E-06
5GO:1902326: positive regulation of chlorophyll biosynthetic process4.37E-06
6GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.33E-05
7GO:0042793: transcription from plastid promoter3.30E-05
8GO:0000741: karyogamy3.30E-05
9GO:0009642: response to light intensity5.85E-05
10GO:0009658: chloroplast organization6.56E-05
11GO:0006418: tRNA aminoacylation for protein translation1.98E-04
12GO:0010501: RNA secondary structure unwinding2.82E-04
13GO:0010197: polar nucleus fusion2.97E-04
14GO:0009741: response to brassinosteroid2.97E-04
15GO:0009646: response to absence of light3.11E-04
16GO:0032502: developmental process3.57E-04
17GO:0048481: plant ovule development5.20E-04
18GO:0009742: brassinosteroid mediated signaling pathway1.12E-03
19GO:0009058: biosynthetic process1.29E-03
20GO:0010468: regulation of gene expression1.73E-03
21GO:0009416: response to light stimulus4.57E-03
22GO:0006414: translational elongation6.02E-03
23GO:0009651: response to salt stress1.75E-02
24GO:0006355: regulation of transcription, DNA-templated3.77E-02
RankGO TermAdjusted P value
1GO:0004825: methionine-tRNA ligase activity1.54E-06
2GO:0070180: large ribosomal subunit rRNA binding8.33E-06
3GO:0004812: aminoacyl-tRNA ligase activity2.68E-04
4GO:0008483: transaminase activity4.04E-04
5GO:0004004: ATP-dependent RNA helicase activity4.86E-04
6GO:0008026: ATP-dependent helicase activity1.12E-03
7GO:0019843: rRNA binding1.25E-03
8GO:0030170: pyridoxal phosphate binding1.34E-03
9GO:0016887: ATPase activity4.17E-03
10GO:0003677: DNA binding4.66E-03
11GO:0005525: GTP binding6.44E-03
12GO:0003735: structural constituent of ribosome1.21E-02
13GO:0016787: hydrolase activity1.27E-02
14GO:0005524: ATP binding3.73E-02
RankGO TermAdjusted P value
1GO:0042644: chloroplast nucleoid1.20E-07
2GO:0000427: plastid-encoded plastid RNA polymerase complex4.37E-06
3GO:0042646: plastid nucleoid1.33E-05
4GO:0009295: nucleoid4.04E-04
5GO:0009570: chloroplast stroma2.90E-03
6GO:0022626: cytosolic ribosome4.43E-03
7GO:0005840: ribosome7.69E-03
8GO:0009507: chloroplast8.74E-03
9GO:0005737: cytoplasm4.30E-02
Gene type



Gene DE type