co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:1905499: trichome papilla formation	0.00E+00
9	GO:0032544: plastid translation	6.11E-12
10	GO:0015979: photosynthesis	1.65E-09
11	GO:0009773: photosynthetic electron transport in photosystem I	9.12E-09
12	GO:0006810: transport	5.35E-07
13	GO:0009658: chloroplast organization	1.09E-06
14	GO:0010207: photosystem II assembly	1.84E-06
15	GO:0045454: cell redox homeostasis	4.78E-06
16	GO:0009735: response to cytokinin	7.27E-06
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.26E-05
18	GO:0043085: positive regulation of catalytic activity	3.52E-05
19	GO:0018119: peptidyl-cysteine S-nitrosylation	3.52E-05
20	GO:0055114: oxidation-reduction process	4.84E-05
21	GO:0045727: positive regulation of translation	5.85E-05
22	GO:0031365: N-terminal protein amino acid modification	9.24E-05
23	GO:0016117: carotenoid biosynthetic process	2.37E-04
24	GO:0010196: nonphotochemical quenching	2.39E-04
25	GO:1902458: positive regulation of stomatal opening	2.99E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	2.99E-04
27	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.99E-04
28	GO:0009443: pyridoxal 5'-phosphate salvage	2.99E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	2.99E-04
30	GO:0071277: cellular response to calcium ion	2.99E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	2.99E-04
32	GO:0033481: galacturonate biosynthetic process	2.99E-04
33	GO:0043686: co-translational protein modification	2.99E-04
34	GO:0009657: plastid organization	3.71E-04
35	GO:0010027: thylakoid membrane organization	6.23E-04
36	GO:0006729: tetrahydrobiopterin biosynthetic process	6.55E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.55E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.55E-04
39	GO:0006415: translational termination	7.11E-04
40	GO:0009817: defense response to fungus, incompatible interaction	8.71E-04
41	GO:0018298: protein-chromophore linkage	8.71E-04
42	GO:0090506: axillary shoot meristem initiation	1.06E-03
43	GO:0010581: regulation of starch biosynthetic process	1.06E-03
44	GO:0071492: cellular response to UV-A	1.06E-03
45	GO:0006696: ergosterol biosynthetic process	1.06E-03
46	GO:0042744: hydrogen peroxide catabolic process	1.08E-03
47	GO:0034599: cellular response to oxidative stress	1.23E-03
48	GO:0007231: osmosensory signaling pathway	1.52E-03
49	GO:0009768: photosynthesis, light harvesting in photosystem I	1.56E-03
50	GO:0042742: defense response to bacterium	1.58E-03
51	GO:0080092: regulation of pollen tube growth	1.88E-03
52	GO:0019676: ammonia assimilation cycle	2.04E-03
53	GO:0015976: carbon utilization	2.04E-03
54	GO:0071486: cellular response to high light intensity	2.04E-03
55	GO:0019464: glycine decarboxylation via glycine cleavage system	2.04E-03
56	GO:0009765: photosynthesis, light harvesting	2.04E-03
57	GO:0015994: chlorophyll metabolic process	2.04E-03
58	GO:2000122: negative regulation of stomatal complex development	2.04E-03
59	GO:0033500: carbohydrate homeostasis	2.04E-03
60	GO:0006546: glycine catabolic process	2.04E-03
61	GO:0009902: chloroplast relocation	2.04E-03
62	GO:0010021: amylopectin biosynthetic process	2.04E-03
63	GO:0010037: response to carbon dioxide	2.04E-03
64	GO:0006542: glutamine biosynthetic process	2.04E-03
65	GO:0006461: protein complex assembly	2.61E-03
66	GO:0016123: xanthophyll biosynthetic process	2.61E-03
67	GO:0006665: sphingolipid metabolic process	2.61E-03
68	GO:0016120: carotene biosynthetic process	2.61E-03
69	GO:0032543: mitochondrial translation	2.61E-03
70	GO:0006656: phosphatidylcholine biosynthetic process	2.61E-03
71	GO:0006564: L-serine biosynthetic process	2.61E-03
72	GO:0010236: plastoquinone biosynthetic process	2.61E-03
73	GO:0045038: protein import into chloroplast thylakoid membrane	2.61E-03
74	GO:0006662: glycerol ether metabolic process	2.81E-03
75	GO:0042254: ribosome biogenesis	2.90E-03
76	GO:0042549: photosystem II stabilization	3.22E-03
77	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.22E-03
78	GO:0016554: cytidine to uridine editing	3.22E-03
79	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.22E-03
80	GO:0010405: arabinogalactan protein metabolic process	3.22E-03
81	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.46E-03
82	GO:0009955: adaxial/abaxial pattern specification	3.87E-03
83	GO:0010067: procambium histogenesis	3.87E-03
84	GO:1901259: chloroplast rRNA processing	3.87E-03
85	GO:0010189: vitamin E biosynthetic process	3.87E-03
86	GO:0010019: chloroplast-nucleus signaling pathway	3.87E-03
87	GO:0006412: translation	4.04E-03
88	GO:0009395: phospholipid catabolic process	4.57E-03
89	GO:0009645: response to low light intensity stimulus	4.57E-03
90	GO:0050829: defense response to Gram-negative bacterium	4.57E-03
91	GO:0006400: tRNA modification	4.57E-03
92	GO:0009704: de-etiolation	5.30E-03
93	GO:2000070: regulation of response to water deprivation	5.30E-03
94	GO:0015995: chlorophyll biosynthetic process	5.89E-03
95	GO:0015996: chlorophyll catabolic process	6.08E-03
96	GO:0019430: removal of superoxide radicals	6.08E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	6.08E-03
98	GO:0017004: cytochrome complex assembly	6.08E-03
99	GO:0032259: methylation	6.62E-03
100	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.89E-03
101	GO:0010206: photosystem II repair	6.89E-03
102	GO:0090333: regulation of stomatal closure	6.89E-03
103	GO:0000373: Group II intron splicing	6.89E-03
104	GO:0042761: very long-chain fatty acid biosynthetic process	7.74E-03
105	GO:1900865: chloroplast RNA modification	7.74E-03
106	GO:0010380: regulation of chlorophyll biosynthetic process	7.74E-03
107	GO:0008152: metabolic process	8.21E-03
108	GO:0006259: DNA metabolic process	8.62E-03
109	GO:0009409: response to cold	9.31E-03
110	GO:0006816: calcium ion transport	9.55E-03
111	GO:0006265: DNA topological change	9.55E-03
112	GO:0009073: aromatic amino acid family biosynthetic process	9.55E-03
113	GO:0000272: polysaccharide catabolic process	9.55E-03
114	GO:0006820: anion transport	1.05E-02
115	GO:0045037: protein import into chloroplast stroma	1.05E-02
116	GO:0009767: photosynthetic electron transport chain	1.15E-02
117	GO:0009644: response to high light intensity	1.16E-02
118	GO:0019253: reductive pentose-phosphate cycle	1.25E-02
119	GO:0010223: secondary shoot formation	1.25E-02
120	GO:0009225: nucleotide-sugar metabolic process	1.36E-02
121	GO:0070588: calcium ion transmembrane transport	1.36E-02
122	GO:0006364: rRNA processing	1.45E-02
123	GO:0019762: glucosinolate catabolic process	1.47E-02
124	GO:0010025: wax biosynthetic process	1.47E-02
125	GO:0006418: tRNA aminoacylation for protein translation	1.69E-02
126	GO:0061077: chaperone-mediated protein folding	1.81E-02
127	GO:0009269: response to desiccation	1.81E-02
128	GO:0016998: cell wall macromolecule catabolic process	1.81E-02
129	GO:0016226: iron-sulfur cluster assembly	1.93E-02
130	GO:0009294: DNA mediated transformation	2.05E-02
131	GO:0001944: vasculature development	2.05E-02
132	GO:0010089: xylem development	2.18E-02
133	GO:0010091: trichome branching	2.18E-02
134	GO:0019722: calcium-mediated signaling	2.18E-02
135	GO:0042631: cellular response to water deprivation	2.44E-02
136	GO:0042335: cuticle development	2.44E-02
137	GO:0010087: phloem or xylem histogenesis	2.44E-02
138	GO:0010182: sugar mediated signaling pathway	2.57E-02
139	GO:0007059: chromosome segregation	2.71E-02
140	GO:0006814: sodium ion transport	2.71E-02
141	GO:0009791: post-embryonic development	2.85E-02
142	GO:0019252: starch biosynthetic process	2.85E-02
143	GO:0002229: defense response to oomycetes	2.99E-02
144	GO:0000302: response to reactive oxygen species	2.99E-02
145	GO:0007264: small GTPase mediated signal transduction	3.13E-02
146	GO:1901657: glycosyl compound metabolic process	3.28E-02
147	GO:0046686: response to cadmium ion	3.40E-02
148	GO:0019760: glucosinolate metabolic process	3.42E-02
149	GO:0045490: pectin catabolic process	3.56E-02
150	GO:0007267: cell-cell signaling	3.58E-02
151	GO:0042128: nitrate assimilation	4.20E-02
152	GO:0010411: xyloglucan metabolic process	4.36E-02
153	GO:0071555: cell wall organization	4.73E-02
154	GO:0000160: phosphorelay signal transduction system	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
10	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0004823: leucine-tRNA ligase activity	0.00E+00
13	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
14	GO:1990534: thermospermine oxidase activity	0.00E+00
15	GO:0019843: rRNA binding	2.53E-09
16	GO:0051920: peroxiredoxin activity	3.22E-06
17	GO:0016209: antioxidant activity	7.85E-06
18	GO:0008047: enzyme activator activity	2.76E-05
19	GO:0016149: translation release factor activity, codon specific	3.26E-05
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.85E-05
21	GO:0016168: chlorophyll binding	6.37E-05
22	GO:0004601: peroxidase activity	1.05E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.99E-04
24	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.99E-04
25	GO:0004560: alpha-L-fucosidase activity	2.99E-04
26	GO:0009496: plastoquinol--plastocyanin reductase activity	2.99E-04
27	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.99E-04
28	GO:0042586: peptide deformylase activity	2.99E-04
29	GO:0051996: squalene synthase activity	2.99E-04
30	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.99E-04
31	GO:0004033: aldo-keto reductase (NADP) activity	3.02E-04
32	GO:0004791: thioredoxin-disulfide reductase activity	3.23E-04
33	GO:0048038: quinone binding	3.87E-04
34	GO:0003747: translation release factor activity	4.46E-04
35	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.59E-04
36	GO:0004618: phosphoglycerate kinase activity	6.55E-04
37	GO:0010297: heteropolysaccharide binding	6.55E-04
38	GO:0004617: phosphoglycerate dehydrogenase activity	6.55E-04
39	GO:0033201: alpha-1,4-glucan synthase activity	6.55E-04
40	GO:0016630: protochlorophyllide reductase activity	6.55E-04
41	GO:0008967: phosphoglycolate phosphatase activity	6.55E-04
42	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.55E-04
43	GO:0000234: phosphoethanolamine N-methyltransferase activity	6.55E-04
44	GO:0047746: chlorophyllase activity	6.55E-04
45	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.11E-04
46	GO:0004373: glycogen (starch) synthase activity	1.06E-03
47	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.06E-03
48	GO:0002161: aminoacyl-tRNA editing activity	1.06E-03
49	GO:0004148: dihydrolipoyl dehydrogenase activity	1.06E-03
50	GO:0070402: NADPH binding	1.06E-03
51	GO:0031409: pigment binding	1.28E-03
52	GO:0005528: FK506 binding	1.42E-03
53	GO:0008508: bile acid:sodium symporter activity	1.52E-03
54	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.52E-03
55	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.52E-03
56	GO:0043023: ribosomal large subunit binding	1.52E-03
57	GO:0051537: 2 iron, 2 sulfur cluster binding	1.77E-03
58	GO:0009011: starch synthase activity	2.04E-03
59	GO:0050378: UDP-glucuronate 4-epimerase activity	2.04E-03
60	GO:0043495: protein anchor	2.04E-03
61	GO:0004659: prenyltransferase activity	2.04E-03
62	GO:0022891: substrate-specific transmembrane transporter activity	2.05E-03
63	GO:0047134: protein-disulfide reductase activity	2.41E-03
64	GO:0003735: structural constituent of ribosome	2.48E-03
65	GO:0008381: mechanically-gated ion channel activity	2.61E-03
66	GO:0009922: fatty acid elongase activity	2.61E-03
67	GO:0003959: NADPH dehydrogenase activity	2.61E-03
68	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.61E-03
69	GO:0004356: glutamate-ammonia ligase activity	2.61E-03
70	GO:0046872: metal ion binding	2.70E-03
71	GO:0050662: coenzyme binding	3.02E-03
72	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.22E-03
73	GO:0004130: cytochrome-c peroxidase activity	3.22E-03
74	GO:0016688: L-ascorbate peroxidase activity	3.22E-03
75	GO:0051753: mannan synthase activity	3.87E-03
76	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.87E-03
77	GO:0008235: metalloexopeptidase activity	4.57E-03
78	GO:0019899: enzyme binding	4.57E-03
79	GO:0052747: sinapyl alcohol dehydrogenase activity	5.30E-03
80	GO:0008135: translation factor activity, RNA binding	6.08E-03
81	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.08E-03
82	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.89E-03
83	GO:0004222: metalloendopeptidase activity	7.20E-03
84	GO:0009055: electron carrier activity	7.87E-03
85	GO:0003746: translation elongation factor activity	8.28E-03
86	GO:0030234: enzyme regulator activity	8.62E-03
87	GO:0004177: aminopeptidase activity	9.55E-03
88	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.05E-02
89	GO:0031072: heat shock protein binding	1.15E-02
90	GO:0005262: calcium channel activity	1.15E-02
91	GO:0004565: beta-galactosidase activity	1.15E-02
92	GO:0004089: carbonate dehydratase activity	1.15E-02
93	GO:0008168: methyltransferase activity	1.23E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.25E-02
95	GO:0008131: primary amine oxidase activity	1.25E-02
96	GO:0008266: poly(U) RNA binding	1.25E-02
97	GO:0016788: hydrolase activity, acting on ester bonds	1.32E-02
98	GO:0051536: iron-sulfur cluster binding	1.58E-02
99	GO:0004857: enzyme inhibitor activity	1.58E-02
100	GO:0033612: receptor serine/threonine kinase binding	1.81E-02
101	GO:0003824: catalytic activity	1.89E-02
102	GO:0030570: pectate lyase activity	2.05E-02
103	GO:0015035: protein disulfide oxidoreductase activity	2.12E-02
104	GO:0016787: hydrolase activity	2.24E-02
105	GO:0004812: aminoacyl-tRNA ligase activity	2.31E-02
106	GO:0005102: receptor binding	2.31E-02
107	GO:0004252: serine-type endopeptidase activity	2.87E-02
108	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.99E-02
109	GO:0004518: nuclease activity	3.13E-02
110	GO:0000156: phosphorelay response regulator activity	3.28E-02
111	GO:0016759: cellulose synthase activity	3.42E-02
112	GO:0008237: metallopeptidase activity	3.58E-02
113	GO:0016597: amino acid binding	3.73E-02
114	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.20E-02
115	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.36E-02
116	GO:0102483: scopolin beta-glucosidase activity	4.36E-02
117	GO:0004683: calmodulin-dependent protein kinase activity	4.36E-02
118	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.52E-02
119	GO:0008236: serine-type peptidase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	8.71E-61
4	GO:0009535: chloroplast thylakoid membrane	5.11E-36
5	GO:0009570: chloroplast stroma	1.04E-29
6	GO:0009941: chloroplast envelope	1.60E-26
7	GO:0009534: chloroplast thylakoid	8.54E-19
8	GO:0009579: thylakoid	2.78E-16
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.27E-14
10	GO:0048046: apoplast	2.14E-10
11	GO:0009543: chloroplast thylakoid lumen	9.98E-07
12	GO:0010319: stromule	2.08E-06
13	GO:0010287: plastoglobule	1.24E-05
14	GO:0009523: photosystem II	2.40E-05
15	GO:0042651: thylakoid membrane	1.27E-04
16	GO:0031969: chloroplast membrane	1.73E-04
17	GO:0009533: chloroplast stromal thylakoid	2.39E-04
18	GO:0009782: photosystem I antenna complex	2.99E-04
19	GO:0009923: fatty acid elongase complex	2.99E-04
20	GO:0005840: ribosome	5.33E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.55E-04
22	GO:0009536: plastid	7.81E-04
23	GO:0030095: chloroplast photosystem II	1.03E-03
24	GO:0009528: plastid inner membrane	1.06E-03
25	GO:0005853: eukaryotic translation elongation factor 1 complex	1.06E-03
26	GO:0030076: light-harvesting complex	1.15E-03
27	GO:0031977: thylakoid lumen	1.45E-03
28	GO:0005960: glycine cleavage complex	1.52E-03
29	GO:0009654: photosystem II oxygen evolving complex	1.56E-03
30	GO:0009532: plastid stroma	1.72E-03
31	GO:0009527: plastid outer membrane	2.04E-03
32	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.04E-03
33	GO:0009505: plant-type cell wall	2.60E-03
34	GO:0009512: cytochrome b6f complex	2.61E-03
35	GO:0009706: chloroplast inner membrane	3.68E-03
36	GO:0009840: chloroplastic endopeptidase Clp complex	3.87E-03
37	GO:0009501: amyloplast	5.30E-03
38	GO:0009539: photosystem II reaction center	6.08E-03
39	GO:0009707: chloroplast outer membrane	6.53E-03
40	GO:0005763: mitochondrial small ribosomal subunit	6.89E-03
41	GO:0015934: large ribosomal subunit	7.55E-03
42	GO:0016324: apical plasma membrane	8.62E-03
43	GO:0046658: anchored component of plasma membrane	1.06E-02
44	GO:0000312: plastid small ribosomal subunit	1.25E-02
45	GO:0005875: microtubule associated complex	1.47E-02
46	GO:0015935: small ribosomal subunit	1.81E-02
47	GO:0009522: photosystem I	2.71E-02
48	GO:0019898: extrinsic component of membrane	2.85E-02
49	GO:0016021: integral component of membrane	3.21E-02
50	GO:0032580: Golgi cisterna membrane	3.42E-02
51	GO:0009295: nucleoid	3.58E-02
52	GO:0005778: peroxisomal membrane	3.58E-02
53	GO:0030529: intracellular ribonucleoprotein complex	3.88E-02