GO Enrichment Analysis of Co-expressed Genes with
AT3G53990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010203: response to very low fluence red light stimulus | 0.00E+00 |
| 2 | GO:0015015: heparan sulfate proteoglycan biosynthetic process, enzymatic modification | 0.00E+00 |
| 3 | GO:0071311: cellular response to acetate | 0.00E+00 |
| 4 | GO:0071260: cellular response to mechanical stimulus | 0.00E+00 |
| 5 | GO:0000380: alternative mRNA splicing, via spliceosome | 4.26E-06 |
| 6 | GO:0045087: innate immune response | 3.67E-05 |
| 7 | GO:0080173: male-female gamete recognition during double fertilization | 4.74E-05 |
| 8 | GO:0010201: response to continuous far red light stimulus by the high-irradiance response system | 4.74E-05 |
| 9 | GO:0030259: lipid glycosylation | 1.17E-04 |
| 10 | GO:0015914: phospholipid transport | 1.17E-04 |
| 11 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.28E-04 |
| 12 | GO:0071230: cellular response to amino acid stimulus | 2.00E-04 |
| 13 | GO:0017006: protein-tetrapyrrole linkage | 2.00E-04 |
| 14 | GO:0045836: positive regulation of meiotic nuclear division | 2.00E-04 |
| 15 | GO:0010366: negative regulation of ethylene biosynthetic process | 2.00E-04 |
| 16 | GO:0009584: detection of visible light | 2.94E-04 |
| 17 | GO:0044211: CTP salvage | 2.94E-04 |
| 18 | GO:0055070: copper ion homeostasis | 2.94E-04 |
| 19 | GO:0044206: UMP salvage | 3.94E-04 |
| 20 | GO:1903830: magnesium ion transmembrane transport | 3.94E-04 |
| 21 | GO:0045927: positive regulation of growth | 5.00E-04 |
| 22 | GO:0006656: phosphatidylcholine biosynthetic process | 5.00E-04 |
| 23 | GO:0043097: pyrimidine nucleoside salvage | 5.00E-04 |
| 24 | GO:0031365: N-terminal protein amino acid modification | 5.00E-04 |
| 25 | GO:0018298: protein-chromophore linkage | 5.59E-04 |
| 26 | GO:0031053: primary miRNA processing | 6.13E-04 |
| 27 | GO:0006206: pyrimidine nucleobase metabolic process | 6.13E-04 |
| 28 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 6.13E-04 |
| 29 | GO:0010405: arabinogalactan protein metabolic process | 6.13E-04 |
| 30 | GO:0010218: response to far red light | 6.14E-04 |
| 31 | GO:0010043: response to zinc ion | 6.43E-04 |
| 32 | GO:0017148: negative regulation of translation | 7.31E-04 |
| 33 | GO:0015693: magnesium ion transport | 8.54E-04 |
| 34 | GO:0010161: red light signaling pathway | 8.54E-04 |
| 35 | GO:0019827: stem cell population maintenance | 9.81E-04 |
| 36 | GO:0032508: DNA duplex unwinding | 9.81E-04 |
| 37 | GO:0009827: plant-type cell wall modification | 1.11E-03 |
| 38 | GO:0048507: meristem development | 1.25E-03 |
| 39 | GO:0046685: response to arsenic-containing substance | 1.25E-03 |
| 40 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 1.40E-03 |
| 41 | GO:0009638: phototropism | 1.40E-03 |
| 42 | GO:0006816: calcium ion transport | 1.70E-03 |
| 43 | GO:0005975: carbohydrate metabolic process | 1.94E-03 |
| 44 | GO:0009735: response to cytokinin | 2.05E-03 |
| 45 | GO:0007030: Golgi organization | 2.38E-03 |
| 46 | GO:0034976: response to endoplasmic reticulum stress | 2.56E-03 |
| 47 | GO:0080147: root hair cell development | 2.74E-03 |
| 48 | GO:0006406: mRNA export from nucleus | 2.74E-03 |
| 49 | GO:0006874: cellular calcium ion homeostasis | 2.93E-03 |
| 50 | GO:0051321: meiotic cell cycle | 3.12E-03 |
| 51 | GO:0009686: gibberellin biosynthetic process | 3.52E-03 |
| 52 | GO:0010082: regulation of root meristem growth | 3.52E-03 |
| 53 | GO:0019722: calcium-mediated signaling | 3.73E-03 |
| 54 | GO:0010214: seed coat development | 3.73E-03 |
| 55 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 3.93E-03 |
| 56 | GO:0070417: cellular response to cold | 3.93E-03 |
| 57 | GO:0034220: ion transmembrane transport | 4.15E-03 |
| 58 | GO:0010501: RNA secondary structure unwinding | 4.15E-03 |
| 59 | GO:0006970: response to osmotic stress | 4.71E-03 |
| 60 | GO:0009723: response to ethylene | 5.06E-03 |
| 61 | GO:0009630: gravitropism | 5.28E-03 |
| 62 | GO:1901657: glycosyl compound metabolic process | 5.52E-03 |
| 63 | GO:0009567: double fertilization forming a zygote and endosperm | 5.75E-03 |
| 64 | GO:0016125: sterol metabolic process | 5.75E-03 |
| 65 | GO:0015979: photosynthesis | 6.18E-03 |
| 66 | GO:0009651: response to salt stress | 6.46E-03 |
| 67 | GO:0016126: sterol biosynthetic process | 6.50E-03 |
| 68 | GO:0010029: regulation of seed germination | 6.75E-03 |
| 69 | GO:0015995: chlorophyll biosynthetic process | 7.28E-03 |
| 70 | GO:0009813: flavonoid biosynthetic process | 8.09E-03 |
| 71 | GO:0010119: regulation of stomatal movement | 8.65E-03 |
| 72 | GO:0009637: response to blue light | 9.22E-03 |
| 73 | GO:0030001: metal ion transport | 1.01E-02 |
| 74 | GO:0009640: photomorphogenesis | 1.10E-02 |
| 75 | GO:0010114: response to red light | 1.10E-02 |
| 76 | GO:0008643: carbohydrate transport | 1.16E-02 |
| 77 | GO:0006812: cation transport | 1.29E-02 |
| 78 | GO:0009585: red, far-red light phototransduction | 1.36E-02 |
| 79 | GO:0009416: response to light stimulus | 1.42E-02 |
| 80 | GO:0009737: response to abscisic acid | 1.46E-02 |
| 81 | GO:0009740: gibberellic acid mediated signaling pathway | 1.67E-02 |
| 82 | GO:0009553: embryo sac development | 1.71E-02 |
| 83 | GO:0000398: mRNA splicing, via spliceosome | 1.93E-02 |
| 84 | GO:0009058: biosynthetic process | 2.13E-02 |
| 85 | GO:0009845: seed germination | 2.16E-02 |
| 86 | GO:0007623: circadian rhythm | 2.57E-02 |
| 87 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.66E-02 |
| 88 | GO:0009739: response to gibberellin | 2.79E-02 |
| 89 | GO:0009414: response to water deprivation | 2.82E-02 |
| 90 | GO:0010468: regulation of gene expression | 2.92E-02 |
| 91 | GO:0008380: RNA splicing | 2.92E-02 |
| 92 | GO:0009733: response to auxin | 3.24E-02 |
| 93 | GO:0009409: response to cold | 3.90E-02 |
| 94 | GO:0080167: response to karrikin | 4.09E-02 |
| 95 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.19E-02 |
| 96 | GO:0045454: cell redox homeostasis | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 2 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 3 | GO:0017095: heparan sulfate 6-O-sulfotransferase activity | 0.00E+00 |
| 4 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0015276: ligand-gated ion channel activity | 0.00E+00 |
| 6 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 7 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 8 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 10 | GO:0008476: protein-tyrosine sulfotransferase activity | 0.00E+00 |
| 11 | GO:0008066: glutamate receptor activity | 4.74E-05 |
| 12 | GO:0031516: far-red light photoreceptor activity | 4.74E-05 |
| 13 | GO:0016906: sterol 3-beta-glucosyltransferase activity | 4.74E-05 |
| 14 | GO:0080079: cellobiose glucosidase activity | 4.74E-05 |
| 15 | GO:0102203: brassicasterol glucosyltransferase activity | 4.74E-05 |
| 16 | GO:0102202: soladodine glucosyltransferase activity | 4.74E-05 |
| 17 | GO:0004565: beta-galactosidase activity | 6.88E-05 |
| 18 | GO:0031409: pigment binding | 1.02E-04 |
| 19 | GO:0016630: protochlorophyllide reductase activity | 1.17E-04 |
| 20 | GO:0009883: red or far-red light photoreceptor activity | 1.17E-04 |
| 21 | GO:0008020: G-protein coupled photoreceptor activity | 2.00E-04 |
| 22 | GO:0008526: phosphatidylinositol transporter activity | 3.94E-04 |
| 23 | GO:0004845: uracil phosphoribosyltransferase activity | 3.94E-04 |
| 24 | GO:0016168: chlorophyll binding | 4.56E-04 |
| 25 | GO:0015562: efflux transmembrane transporter activity | 6.13E-04 |
| 26 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 6.13E-04 |
| 27 | GO:0004849: uridine kinase activity | 7.31E-04 |
| 28 | GO:0008235: metalloexopeptidase activity | 8.54E-04 |
| 29 | GO:0004673: protein histidine kinase activity | 1.55E-03 |
| 30 | GO:0004177: aminopeptidase activity | 1.70E-03 |
| 31 | GO:0003729: mRNA binding | 1.88E-03 |
| 32 | GO:0015095: magnesium ion transmembrane transporter activity | 2.03E-03 |
| 33 | GO:0000155: phosphorelay sensor kinase activity | 2.03E-03 |
| 34 | GO:0005262: calcium channel activity | 2.03E-03 |
| 35 | GO:0005217: intracellular ligand-gated ion channel activity | 2.38E-03 |
| 36 | GO:0004970: ionotropic glutamate receptor activity | 2.38E-03 |
| 37 | GO:0008324: cation transmembrane transporter activity | 2.93E-03 |
| 38 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 3.12E-03 |
| 39 | GO:0003756: protein disulfide isomerase activity | 3.73E-03 |
| 40 | GO:0046873: metal ion transmembrane transporter activity | 4.37E-03 |
| 41 | GO:0003723: RNA binding | 6.70E-03 |
| 42 | GO:0042803: protein homodimerization activity | 6.79E-03 |
| 43 | GO:0102483: scopolin beta-glucosidase activity | 7.28E-03 |
| 44 | GO:0004672: protein kinase activity | 9.12E-03 |
| 45 | GO:0003697: single-stranded DNA binding | 9.22E-03 |
| 46 | GO:0008422: beta-glucosidase activity | 9.80E-03 |
| 47 | GO:0043621: protein self-association | 1.16E-02 |
| 48 | GO:0005198: structural molecule activity | 1.20E-02 |
| 49 | GO:0003690: double-stranded DNA binding | 1.39E-02 |
| 50 | GO:0031625: ubiquitin protein ligase binding | 1.46E-02 |
| 51 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.64E-02 |
| 52 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.64E-02 |
| 53 | GO:0016758: transferase activity, transferring hexosyl groups | 2.01E-02 |
| 54 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.09E-02 |
| 55 | GO:0005515: protein binding | 2.94E-02 |
| 56 | GO:0042802: identical protein binding | 3.05E-02 |
| 57 | GO:0008168: methyltransferase activity | 3.42E-02 |
| 58 | GO:0000287: magnesium ion binding | 3.47E-02 |
| 59 | GO:0004497: monooxygenase activity | 4.09E-02 |
| 60 | GO:0004871: signal transducer activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044599: AP-5 adaptor complex | 0.00E+00 |
| 2 | GO:0010445: nuclear dicing body | 3.94E-04 |
| 3 | GO:0016604: nuclear body | 1.40E-03 |
| 4 | GO:0016607: nuclear speck | 1.44E-03 |
| 5 | GO:0010287: plastoglobule | 1.97E-03 |
| 6 | GO:0030076: light-harvesting complex | 2.38E-03 |
| 7 | GO:0009534: chloroplast thylakoid | 2.91E-03 |
| 8 | GO:0009522: photosystem I | 4.59E-03 |
| 9 | GO:0009523: photosystem II | 4.81E-03 |
| 10 | GO:0005768: endosome | 4.90E-03 |
| 11 | GO:0005774: vacuolar membrane | 6.78E-03 |
| 12 | GO:0048046: apoplast | 7.30E-03 |
| 13 | GO:0009505: plant-type cell wall | 7.45E-03 |
| 14 | GO:0009707: chloroplast outer membrane | 7.81E-03 |
| 15 | GO:0000151: ubiquitin ligase complex | 7.81E-03 |
| 16 | GO:0000139: Golgi membrane | 8.22E-03 |
| 17 | GO:0005618: cell wall | 8.32E-03 |
| 18 | GO:0005794: Golgi apparatus | 9.46E-03 |
| 19 | GO:0016021: integral component of membrane | 1.27E-02 |
| 20 | GO:0005773: vacuole | 1.29E-02 |
| 21 | GO:0005681: spliceosomal complex | 1.53E-02 |
| 22 | GO:0009535: chloroplast thylakoid membrane | 1.56E-02 |
| 23 | GO:0005834: heterotrimeric G-protein complex | 1.60E-02 |
| 24 | GO:0005777: peroxisome | 1.63E-02 |
| 25 | GO:0009579: thylakoid | 1.70E-02 |
| 26 | GO:0005802: trans-Golgi network | 2.28E-02 |
| 27 | GO:0009507: chloroplast | 3.14E-02 |
| 28 | GO:0009536: plastid | 3.54E-02 |
| 29 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.75E-02 |
| 30 | GO:0009941: chloroplast envelope | 3.94E-02 |
| 31 | GO:0005730: nucleolus | 4.85E-02 |
| 32 | GO:0009506: plasmodesma | 4.95E-02 |