co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0015670: carbon dioxide transport	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	1.78E-06
5	GO:0071484: cellular response to light intensity	3.52E-06
6	GO:0016120: carotene biosynthetic process	1.12E-05
7	GO:0033481: galacturonate biosynthetic process	8.43E-05
8	GO:0006106: fumarate metabolic process	8.43E-05
9	GO:0000038: very long-chain fatty acid metabolic process	1.18E-04
10	GO:0010207: photosystem II assembly	1.80E-04
11	GO:0043255: regulation of carbohydrate biosynthetic process	2.00E-04
12	GO:0010115: regulation of abscisic acid biosynthetic process	2.00E-04
13	GO:0010167: response to nitrate	2.04E-04
14	GO:0010025: wax biosynthetic process	2.29E-04
15	GO:0006857: oligopeptide transport	2.74E-04
16	GO:0016998: cell wall macromolecule catabolic process	3.11E-04
17	GO:0015714: phosphoenolpyruvate transport	3.35E-04
18	GO:0009651: response to salt stress	4.30E-04
19	GO:0042335: cuticle development	4.74E-04
20	GO:0034220: ion transmembrane transport	4.74E-04
21	GO:0080170: hydrogen peroxide transmembrane transport	4.84E-04
22	GO:0045727: positive regulation of translation	6.44E-04
23	GO:0015713: phosphoglycerate transport	6.44E-04
24	GO:0030104: water homeostasis	6.44E-04
25	GO:0010109: regulation of photosynthesis	6.44E-04
26	GO:0009414: response to water deprivation	6.83E-04
27	GO:0006633: fatty acid biosynthetic process	7.05E-04
28	GO:0010117: photoprotection	8.14E-04
29	GO:0042128: nitrate assimilation	9.88E-04
30	GO:0009913: epidermal cell differentiation	9.94E-04
31	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	9.94E-04
32	GO:0010337: regulation of salicylic acid metabolic process	9.94E-04
33	GO:0006561: proline biosynthetic process	9.94E-04
34	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.18E-03
35	GO:0009395: phospholipid catabolic process	1.39E-03
36	GO:0050829: defense response to Gram-negative bacterium	1.39E-03
37	GO:0006810: transport	1.39E-03
38	GO:1900057: positive regulation of leaf senescence	1.39E-03
39	GO:0010444: guard mother cell differentiation	1.39E-03
40	GO:0008610: lipid biosynthetic process	1.60E-03
41	GO:0046620: regulation of organ growth	1.60E-03
42	GO:0055075: potassium ion homeostasis	1.60E-03
43	GO:0032544: plastid translation	1.83E-03
44	GO:0009644: response to high light intensity	1.99E-03
45	GO:0010206: photosystem II repair	2.06E-03
46	GO:0010205: photoinhibition	2.30E-03
47	GO:0009638: phototropism	2.30E-03
48	GO:0006032: chitin catabolic process	2.56E-03
49	GO:0009688: abscisic acid biosynthetic process	2.56E-03
50	GO:0009750: response to fructose	2.82E-03
51	GO:0006629: lipid metabolic process	2.90E-03
52	GO:0015706: nitrate transport	3.09E-03
53	GO:0006108: malate metabolic process	3.37E-03
54	GO:0009725: response to hormone	3.37E-03
55	GO:0010143: cutin biosynthetic process	3.66E-03
56	GO:0051726: regulation of cell cycle	3.71E-03
57	GO:0009225: nucleotide-sugar metabolic process	3.95E-03
58	GO:0009825: multidimensional cell growth	3.95E-03
59	GO:0071732: cellular response to nitric oxide	3.95E-03
60	GO:0010030: positive regulation of seed germination	3.95E-03
61	GO:0010053: root epidermal cell differentiation	3.95E-03
62	GO:0006636: unsaturated fatty acid biosynthetic process	4.26E-03
63	GO:0006833: water transport	4.26E-03
64	GO:0006487: protein N-linked glycosylation	4.57E-03
65	GO:0007017: microtubule-based process	4.89E-03
66	GO:0009409: response to cold	5.21E-03
67	GO:0031408: oxylipin biosynthetic process	5.22E-03
68	GO:0071369: cellular response to ethylene stimulus	5.89E-03
69	GO:0009416: response to light stimulus	6.01E-03
70	GO:0042127: regulation of cell proliferation	6.24E-03
71	GO:0016117: carotenoid biosynthetic process	6.60E-03
72	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.60E-03
73	GO:0042631: cellular response to water deprivation	6.97E-03
74	GO:0010182: sugar mediated signaling pathway	7.34E-03
75	GO:0009741: response to brassinosteroid	7.34E-03
76	GO:0071281: cellular response to iron ion	9.30E-03
77	GO:0007049: cell cycle	1.04E-02
78	GO:0016126: sterol biosynthetic process	1.10E-02
79	GO:0080167: response to karrikin	1.16E-02
80	GO:0010411: xyloglucan metabolic process	1.23E-02
81	GO:0030244: cellulose biosynthetic process	1.33E-02
82	GO:0018298: protein-chromophore linkage	1.33E-02
83	GO:0006811: ion transport	1.42E-02
84	GO:0009631: cold acclimation	1.47E-02
85	GO:0006869: lipid transport	1.52E-02
86	GO:0006099: tricarboxylic acid cycle	1.62E-02
87	GO:0016042: lipid catabolic process	1.66E-02
88	GO:0009408: response to heat	1.71E-02
89	GO:0009926: auxin polar transport	1.88E-02
90	GO:0009744: response to sucrose	1.88E-02
91	GO:0042546: cell wall biogenesis	1.93E-02
92	GO:0055114: oxidation-reduction process	2.11E-02
93	GO:0009809: lignin biosynthetic process	2.32E-02
94	GO:0006364: rRNA processing	2.32E-02
95	GO:0009585: red, far-red light phototransduction	2.32E-02
96	GO:0005975: carbohydrate metabolic process	2.49E-02
97	GO:0006096: glycolytic process	2.62E-02
98	GO:0048316: seed development	2.68E-02
99	GO:0009735: response to cytokinin	2.78E-02
100	GO:0009742: brassinosteroid mediated signaling pathway	3.11E-02
101	GO:0051301: cell division	3.31E-02
102	GO:0007165: signal transduction	3.69E-02
103	GO:0009737: response to abscisic acid	3.79E-02
104	GO:0055085: transmembrane transport	3.85E-02
105	GO:0006413: translational initiation	4.19E-02
106	GO:0007623: circadian rhythm	4.40E-02
107	GO:0010150: leaf senescence	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0045436: lycopene beta cyclase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
5	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	8.43E-05
6	GO:0019210: kinase inhibitor activity	8.43E-05
7	GO:0004333: fumarate hydratase activity	8.43E-05
8	GO:0004565: beta-galactosidase activity	1.58E-04
9	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.29E-04
10	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.29E-04
11	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.29E-04
12	GO:0050734: hydroxycinnamoyltransferase activity	3.35E-04
13	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	4.84E-04
14	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	4.84E-04
15	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	6.44E-04
16	GO:0052793: pectin acetylesterase activity	6.44E-04
17	GO:0004506: squalene monooxygenase activity	6.44E-04
18	GO:0050378: UDP-glucuronate 4-epimerase activity	6.44E-04
19	GO:0015120: phosphoglycerate transmembrane transporter activity	6.44E-04
20	GO:0015250: water channel activity	8.91E-04
21	GO:0004629: phospholipase C activity	9.94E-04
22	GO:0000293: ferric-chelate reductase activity	9.94E-04
23	GO:0035673: oligopeptide transmembrane transporter activity	9.94E-04
24	GO:0004017: adenylate kinase activity	1.18E-03
25	GO:0004435: phosphatidylinositol phospholipase C activity	1.18E-03
26	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.26E-03
27	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.83E-03
28	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.06E-03
29	GO:0015293: symporter activity	2.07E-03
30	GO:0015112: nitrate transmembrane transporter activity	2.30E-03
31	GO:0004568: chitinase activity	2.56E-03
32	GO:0015198: oligopeptide transporter activity	3.09E-03
33	GO:0008081: phosphoric diester hydrolase activity	3.37E-03
34	GO:0004022: alcohol dehydrogenase (NAD) activity	3.37E-03
35	GO:0008266: poly(U) RNA binding	3.66E-03
36	GO:0005215: transporter activity	3.83E-03
37	GO:0008146: sulfotransferase activity	3.95E-03
38	GO:0005528: FK506 binding	4.57E-03
39	GO:0016491: oxidoreductase activity	5.00E-03
40	GO:0004176: ATP-dependent peptidase activity	5.22E-03
41	GO:0022891: substrate-specific transmembrane transporter activity	5.89E-03
42	GO:0050662: coenzyme binding	7.72E-03
43	GO:0019901: protein kinase binding	8.10E-03
44	GO:0004872: receptor activity	8.10E-03
45	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.50E-03
46	GO:0016788: hydrolase activity, acting on ester bonds	9.48E-03
47	GO:0008483: transaminase activity	1.01E-02
48	GO:0005200: structural constituent of cytoskeleton	1.01E-02
49	GO:0016168: chlorophyll binding	1.14E-02
50	GO:0008375: acetylglucosaminyltransferase activity	1.19E-02
51	GO:0030247: polysaccharide binding	1.23E-02
52	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.23E-02
53	GO:0052689: carboxylic ester hydrolase activity	1.28E-02
54	GO:0004871: signal transducer activity	1.45E-02
55	GO:0003993: acid phosphatase activity	1.62E-02
56	GO:0009055: electron carrier activity	1.83E-02
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.10E-02
58	GO:0003690: double-stranded DNA binding	2.38E-02
59	GO:0022857: transmembrane transporter activity	2.86E-02
60	GO:0016746: transferase activity, transferring acyl groups	3.05E-02
61	GO:0019843: rRNA binding	3.50E-02
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.57E-02
63	GO:0015297: antiporter activity	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	6.22E-06
3	GO:0043674: columella	8.43E-05
4	GO:0045239: tricarboxylic acid cycle enzyme complex	8.43E-05
5	GO:0009535: chloroplast thylakoid membrane	1.62E-04
6	GO:0030093: chloroplast photosystem I	2.00E-04
7	GO:0009579: thylakoid	2.74E-04
8	GO:0009534: chloroplast thylakoid	2.80E-04
9	GO:0015630: microtubule cytoskeleton	4.84E-04
10	GO:0016021: integral component of membrane	5.07E-04
11	GO:0009543: chloroplast thylakoid lumen	5.30E-04
12	GO:0046658: anchored component of plasma membrane	1.12E-03
13	GO:0042807: central vacuole	1.39E-03
14	GO:0031969: chloroplast membrane	1.78E-03
15	GO:0048046: apoplast	1.90E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.06E-03
17	GO:0008180: COP9 signalosome	2.06E-03
18	GO:0009941: chloroplast envelope	3.16E-03
19	GO:0009508: plastid chromosome	3.37E-03
20	GO:0030095: chloroplast photosystem II	3.66E-03
21	GO:0005887: integral component of plasma membrane	4.28E-03
22	GO:0005886: plasma membrane	4.84E-03
23	GO:0009523: photosystem II	8.10E-03
24	GO:0032580: Golgi cisterna membrane	9.72E-03
25	GO:0009295: nucleoid	1.01E-02
26	GO:0019005: SCF ubiquitin ligase complex	1.33E-02
27	GO:0031977: thylakoid lumen	1.77E-02
28	GO:0009570: chloroplast stroma	1.88E-02
29	GO:0000502: proteasome complex	2.32E-02
30	GO:0010287: plastoglobule	3.37E-02
31	GO:0005773: vacuole	4.01E-02
32	GO:0009705: plant-type vacuole membrane	4.40E-02