co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
2	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
3	GO:0006105: succinate metabolic process	0.00E+00
4	GO:0019484: beta-alanine catabolic process	0.00E+00
5	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
6	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
7	GO:0048227: plasma membrane to endosome transport	0.00E+00
8	GO:0010398: xylogalacturonan metabolic process	0.00E+00
9	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
10	GO:0045185: maintenance of protein location	0.00E+00
11	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
12	GO:0006592: ornithine biosynthetic process	0.00E+00
13	GO:0046686: response to cadmium ion	7.35E-08
14	GO:0009450: gamma-aminobutyric acid catabolic process	2.27E-04
15	GO:0007292: female gamete generation	2.27E-04
16	GO:0019628: urate catabolic process	2.27E-04
17	GO:0000349: generation of catalytic spliceosome for first transesterification step	2.27E-04
18	GO:1903409: reactive oxygen species biosynthetic process	2.27E-04
19	GO:0010184: cytokinin transport	2.27E-04
20	GO:0035344: hypoxanthine transport	2.27E-04
21	GO:0071366: cellular response to indolebutyric acid stimulus	2.27E-04
22	GO:0009865: pollen tube adhesion	2.27E-04
23	GO:0006540: glutamate decarboxylation to succinate	2.27E-04
24	GO:0098721: uracil import across plasma membrane	2.27E-04
25	GO:0006144: purine nucleobase metabolic process	2.27E-04
26	GO:0098702: adenine import across plasma membrane	2.27E-04
27	GO:1903648: positive regulation of chlorophyll catabolic process	2.27E-04
28	GO:0046167: glycerol-3-phosphate biosynthetic process	2.27E-04
29	GO:0035266: meristem growth	2.27E-04
30	GO:0098710: guanine import across plasma membrane	2.27E-04
31	GO:0010033: response to organic substance	5.05E-04
32	GO:0006641: triglyceride metabolic process	5.05E-04
33	GO:0051788: response to misfolded protein	5.05E-04
34	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.05E-04
35	GO:0007154: cell communication	5.05E-04
36	GO:0052542: defense response by callose deposition	5.05E-04
37	GO:0051258: protein polymerization	5.05E-04
38	GO:0042325: regulation of phosphorylation	5.05E-04
39	GO:0019441: tryptophan catabolic process to kynurenine	5.05E-04
40	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.05E-04
41	GO:0045454: cell redox homeostasis	5.91E-04
42	GO:0007031: peroxisome organization	7.89E-04
43	GO:0060968: regulation of gene silencing	8.21E-04
44	GO:0042344: indole glucosinolate catabolic process	8.21E-04
45	GO:0019563: glycerol catabolic process	8.21E-04
46	GO:0010359: regulation of anion channel activity	8.21E-04
47	GO:0061158: 3'-UTR-mediated mRNA destabilization	8.21E-04
48	GO:0033523: histone H2B ubiquitination	8.21E-04
49	GO:0055114: oxidation-reduction process	1.05E-03
50	GO:0009650: UV protection	1.17E-03
51	GO:0006072: glycerol-3-phosphate metabolic process	1.17E-03
52	GO:0009113: purine nucleobase biosynthetic process	1.17E-03
53	GO:0006882: cellular zinc ion homeostasis	1.17E-03
54	GO:0051259: protein oligomerization	1.17E-03
55	GO:0019438: aromatic compound biosynthetic process	1.17E-03
56	GO:0006624: vacuolar protein processing	1.17E-03
57	GO:0048194: Golgi vesicle budding	1.17E-03
58	GO:0006020: inositol metabolic process	1.17E-03
59	GO:0071215: cellular response to abscisic acid stimulus	1.38E-03
60	GO:0033320: UDP-D-xylose biosynthetic process	1.56E-03
61	GO:0010483: pollen tube reception	1.56E-03
62	GO:1902584: positive regulation of response to water deprivation	1.56E-03
63	GO:0006536: glutamate metabolic process	1.56E-03
64	GO:0010188: response to microbial phytotoxin	1.56E-03
65	GO:0006878: cellular copper ion homeostasis	1.56E-03
66	GO:0009626: plant-type hypersensitive response	1.89E-03
67	GO:0018344: protein geranylgeranylation	1.99E-03
68	GO:0030308: negative regulation of cell growth	1.99E-03
69	GO:0043097: pyrimidine nucleoside salvage	1.99E-03
70	GO:0005513: detection of calcium ion	1.99E-03
71	GO:0007029: endoplasmic reticulum organization	1.99E-03
72	GO:0042742: defense response to bacterium	2.32E-03
73	GO:0006635: fatty acid beta-oxidation	2.33E-03
74	GO:0048232: male gamete generation	2.45E-03
75	GO:0006555: methionine metabolic process	2.45E-03
76	GO:0043248: proteasome assembly	2.45E-03
77	GO:0042732: D-xylose metabolic process	2.45E-03
78	GO:0009267: cellular response to starvation	2.45E-03
79	GO:1902456: regulation of stomatal opening	2.45E-03
80	GO:1900425: negative regulation of defense response to bacterium	2.45E-03
81	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.45E-03
82	GO:0010337: regulation of salicylic acid metabolic process	2.45E-03
83	GO:0006206: pyrimidine nucleobase metabolic process	2.45E-03
84	GO:0006014: D-ribose metabolic process	2.45E-03
85	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.45E-03
86	GO:0015691: cadmium ion transport	2.45E-03
87	GO:0048827: phyllome development	2.45E-03
88	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.45E-03
89	GO:0009567: double fertilization forming a zygote and endosperm	2.82E-03
90	GO:0019509: L-methionine salvage from methylthioadenosine	2.94E-03
91	GO:0009612: response to mechanical stimulus	2.94E-03
92	GO:0006694: steroid biosynthetic process	2.94E-03
93	GO:0048280: vesicle fusion with Golgi apparatus	2.94E-03
94	GO:0051607: defense response to virus	3.17E-03
95	GO:0001666: response to hypoxia	3.36E-03
96	GO:0098869: cellular oxidant detoxification	3.47E-03
97	GO:0006955: immune response	3.47E-03
98	GO:0070370: cellular heat acclimation	3.47E-03
99	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.47E-03
100	GO:1900057: positive regulation of leaf senescence	3.47E-03
101	GO:0009396: folic acid-containing compound biosynthetic process	3.47E-03
102	GO:0016559: peroxisome fission	4.02E-03
103	GO:0009819: drought recovery	4.02E-03
104	GO:0006605: protein targeting	4.02E-03
105	GO:1900150: regulation of defense response to fungus	4.02E-03
106	GO:0010078: maintenance of root meristem identity	4.02E-03
107	GO:0048364: root development	4.09E-03
108	GO:0008219: cell death	4.38E-03
109	GO:0006526: arginine biosynthetic process	4.60E-03
110	GO:0030968: endoplasmic reticulum unfolded protein response	4.60E-03
111	GO:0009808: lignin metabolic process	4.60E-03
112	GO:0006972: hyperosmotic response	4.60E-03
113	GO:0006499: N-terminal protein myristoylation	4.82E-03
114	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.10E-03
115	GO:0007338: single fertilization	5.22E-03
116	GO:0009051: pentose-phosphate shunt, oxidative branch	5.22E-03
117	GO:0009821: alkaloid biosynthetic process	5.22E-03
118	GO:0010468: regulation of gene expression	5.54E-03
119	GO:0045087: innate immune response	5.54E-03
120	GO:0016051: carbohydrate biosynthetic process	5.54E-03
121	GO:0006099: tricarboxylic acid cycle	5.79E-03
122	GO:0035999: tetrahydrofolate interconversion	5.85E-03
123	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.85E-03
124	GO:0008202: steroid metabolic process	5.85E-03
125	GO:0007064: mitotic sister chromatid cohesion	6.51E-03
126	GO:0006896: Golgi to vacuole transport	6.51E-03
127	GO:0006535: cysteine biosynthetic process from serine	6.51E-03
128	GO:0043069: negative regulation of programmed cell death	6.51E-03
129	GO:0048829: root cap development	6.51E-03
130	GO:0010015: root morphogenesis	7.20E-03
131	GO:0052544: defense response by callose deposition in cell wall	7.20E-03
132	GO:0006378: mRNA polyadenylation	7.20E-03
133	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.92E-03
134	GO:0000266: mitochondrial fission	7.92E-03
135	GO:0006979: response to oxidative stress	8.12E-03
136	GO:0006006: glucose metabolic process	8.66E-03
137	GO:0034605: cellular response to heat	9.42E-03
138	GO:0006541: glutamine metabolic process	9.42E-03
139	GO:0002237: response to molecule of bacterial origin	9.42E-03
140	GO:0009933: meristem structural organization	9.42E-03
141	GO:0006468: protein phosphorylation	9.50E-03
142	GO:0080167: response to karrikin	1.01E-02
143	GO:0009225: nucleotide-sugar metabolic process	1.02E-02
144	GO:0010167: response to nitrate	1.02E-02
145	GO:0005985: sucrose metabolic process	1.02E-02
146	GO:0090351: seedling development	1.02E-02
147	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.06E-02
148	GO:0016192: vesicle-mediated transport	1.08E-02
149	GO:0000162: tryptophan biosynthetic process	1.10E-02
150	GO:0034976: response to endoplasmic reticulum stress	1.10E-02
151	GO:0006863: purine nucleobase transport	1.10E-02
152	GO:0046777: protein autophosphorylation	1.11E-02
153	GO:0048367: shoot system development	1.18E-02
154	GO:0019344: cysteine biosynthetic process	1.19E-02
155	GO:0051302: regulation of cell division	1.27E-02
156	GO:0031408: oxylipin biosynthetic process	1.36E-02
157	GO:0030433: ubiquitin-dependent ERAD pathway	1.45E-02
158	GO:0031348: negative regulation of defense response	1.45E-02
159	GO:0071456: cellular response to hypoxia	1.45E-02
160	GO:0042147: retrograde transport, endosome to Golgi	1.73E-02
161	GO:0009058: biosynthetic process	1.82E-02
162	GO:0015991: ATP hydrolysis coupled proton transport	1.83E-02
163	GO:0042631: cellular response to water deprivation	1.83E-02
164	GO:0045489: pectin biosynthetic process	1.93E-02
165	GO:0010154: fruit development	1.93E-02
166	GO:0006662: glycerol ether metabolic process	1.93E-02
167	GO:0006623: protein targeting to vacuole	2.14E-02
168	GO:0010183: pollen tube guidance	2.14E-02
169	GO:0009749: response to glucose	2.14E-02
170	GO:0019252: starch biosynthetic process	2.14E-02
171	GO:0008654: phospholipid biosynthetic process	2.14E-02
172	GO:0000302: response to reactive oxygen species	2.24E-02
173	GO:0006891: intra-Golgi vesicle-mediated transport	2.24E-02
174	GO:0007264: small GTPase mediated signal transduction	2.35E-02
175	GO:0010583: response to cyclopentenone	2.35E-02
176	GO:0009630: gravitropism	2.35E-02
177	GO:0010150: leaf senescence	2.38E-02
178	GO:0009651: response to salt stress	2.43E-02
179	GO:0006914: autophagy	2.57E-02
180	GO:0010286: heat acclimation	2.68E-02
181	GO:0071805: potassium ion transmembrane transport	2.68E-02
182	GO:0016126: sterol biosynthetic process	2.91E-02
183	GO:0010029: regulation of seed germination	3.03E-02
184	GO:0009816: defense response to bacterium, incompatible interaction	3.03E-02
185	GO:0009627: systemic acquired resistance	3.15E-02
186	GO:0006888: ER to Golgi vesicle-mediated transport	3.27E-02
187	GO:0048573: photoperiodism, flowering	3.27E-02
188	GO:0006950: response to stress	3.27E-02
189	GO:0009738: abscisic acid-activated signaling pathway	3.28E-02
190	GO:0009817: defense response to fungus, incompatible interaction	3.52E-02
191	GO:0010311: lateral root formation	3.65E-02
192	GO:0006811: ion transport	3.77E-02
193	GO:0010119: regulation of stomatal movement	3.90E-02
194	GO:0010043: response to zinc ion	3.90E-02
195	GO:0007568: aging	3.90E-02
196	GO:0034599: cellular response to oxidative stress	4.30E-02
197	GO:0055085: transmembrane transport	4.57E-02
198	GO:0010200: response to chitin	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
2	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
3	GO:0004370: glycerol kinase activity	0.00E+00
4	GO:0004846: urate oxidase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
7	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
8	GO:0004168: dolichol kinase activity	0.00E+00
9	GO:0001530: lipopolysaccharide binding	2.27E-04
10	GO:0015208: guanine transmembrane transporter activity	2.27E-04
11	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.27E-04
12	GO:0015294: solute:cation symporter activity	2.27E-04
13	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.27E-04
14	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.27E-04
15	GO:0003867: 4-aminobutyrate transaminase activity	2.27E-04
16	GO:0030544: Hsp70 protein binding	2.27E-04
17	GO:0015207: adenine transmembrane transporter activity	2.27E-04
18	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.27E-04
19	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.05E-04
20	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.05E-04
21	GO:0032934: sterol binding	5.05E-04
22	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	5.05E-04
23	GO:0004061: arylformamidase activity	5.05E-04
24	GO:0004329: formate-tetrahydrofolate ligase activity	5.05E-04
25	GO:0019200: carbohydrate kinase activity	5.05E-04
26	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	5.05E-04
27	GO:0050897: cobalt ion binding	6.34E-04
28	GO:0005093: Rab GDP-dissociation inhibitor activity	8.21E-04
29	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.21E-04
30	GO:0005047: signal recognition particle binding	8.21E-04
31	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.21E-04
32	GO:0000975: regulatory region DNA binding	8.21E-04
33	GO:0004663: Rab geranylgeranyltransferase activity	8.21E-04
34	GO:0015086: cadmium ion transmembrane transporter activity	1.17E-03
35	GO:0004108: citrate (Si)-synthase activity	1.17E-03
36	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.17E-03
37	GO:0004300: enoyl-CoA hydratase activity	1.17E-03
38	GO:0005516: calmodulin binding	1.29E-03
39	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.56E-03
40	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.56E-03
41	GO:0015210: uracil transmembrane transporter activity	1.56E-03
42	GO:0004834: tryptophan synthase activity	1.56E-03
43	GO:0005496: steroid binding	1.99E-03
44	GO:0048040: UDP-glucuronate decarboxylase activity	2.45E-03
45	GO:0004605: phosphatidate cytidylyltransferase activity	2.45E-03
46	GO:0035252: UDP-xylosyltransferase activity	2.45E-03
47	GO:0036402: proteasome-activating ATPase activity	2.45E-03
48	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.65E-03
49	GO:0004124: cysteine synthase activity	2.94E-03
50	GO:0070403: NAD+ binding	2.94E-03
51	GO:0004849: uridine kinase activity	2.94E-03
52	GO:0004012: phospholipid-translocating ATPase activity	2.94E-03
53	GO:0004747: ribokinase activity	2.94E-03
54	GO:0004602: glutathione peroxidase activity	2.94E-03
55	GO:0051213: dioxygenase activity	3.36E-03
56	GO:0004620: phospholipase activity	3.47E-03
57	GO:0004525: ribonuclease III activity	4.02E-03
58	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.02E-03
59	GO:0008865: fructokinase activity	4.02E-03
60	GO:0008142: oxysterol binding	4.60E-03
61	GO:0005096: GTPase activator activity	4.60E-03
62	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.22E-03
63	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.85E-03
64	GO:0004713: protein tyrosine kinase activity	6.51E-03
65	GO:0008171: O-methyltransferase activity	6.51E-03
66	GO:0047372: acylglycerol lipase activity	7.20E-03
67	GO:0005524: ATP binding	7.46E-03
68	GO:0004521: endoribonuclease activity	7.92E-03
69	GO:0004674: protein serine/threonine kinase activity	8.02E-03
70	GO:0019888: protein phosphatase regulator activity	8.66E-03
71	GO:0004022: alcohol dehydrogenase (NAD) activity	8.66E-03
72	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.66E-03
73	GO:0004175: endopeptidase activity	9.42E-03
74	GO:0017025: TBP-class protein binding	1.02E-02
75	GO:0008234: cysteine-type peptidase activity	1.07E-02
76	GO:0061630: ubiquitin protein ligase activity	1.08E-02
77	GO:0043130: ubiquitin binding	1.19E-02
78	GO:0043424: protein histidine kinase binding	1.27E-02
79	GO:0005345: purine nucleobase transmembrane transporter activity	1.27E-02
80	GO:0015079: potassium ion transmembrane transporter activity	1.27E-02
81	GO:0016491: oxidoreductase activity	1.29E-02
82	GO:0016301: kinase activity	1.41E-02
83	GO:0003756: protein disulfide isomerase activity	1.64E-02
84	GO:0003727: single-stranded RNA binding	1.64E-02
85	GO:0047134: protein-disulfide reductase activity	1.73E-02
86	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.77E-02
87	GO:0030170: pyridoxal phosphate binding	1.92E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	2.03E-02
89	GO:0016853: isomerase activity	2.03E-02
90	GO:0015144: carbohydrate transmembrane transporter activity	2.07E-02
91	GO:0004872: receptor activity	2.14E-02
92	GO:0043565: sequence-specific DNA binding	2.20E-02
93	GO:0005351: sugar:proton symporter activity	2.33E-02
94	GO:0004197: cysteine-type endopeptidase activity	2.35E-02
95	GO:0008237: metallopeptidase activity	2.68E-02
96	GO:0003824: catalytic activity	3.02E-02
97	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.03E-02
98	GO:0008375: acetylglucosaminyltransferase activity	3.15E-02
99	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.15E-02
100	GO:0030247: polysaccharide binding	3.27E-02
101	GO:0004683: calmodulin-dependent protein kinase activity	3.27E-02
102	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.40E-02
103	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.17E-02
104	GO:0000149: SNARE binding	4.43E-02
105	GO:0004497: monooxygenase activity	4.56E-02
106	GO:0050661: NADP binding	4.57E-02
107	GO:0004364: glutathione transferase activity	4.85E-02
108	GO:0005484: SNAP receptor activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0000323: lytic vacuole	2.00E-05
3	GO:0005774: vacuolar membrane	1.22E-04
4	GO:0005773: vacuole	1.64E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	2.27E-04
6	GO:0005886: plasma membrane	3.06E-04
7	GO:0005829: cytosol	4.22E-04
8	GO:0042406: extrinsic component of endoplasmic reticulum membrane	8.21E-04
9	GO:0005783: endoplasmic reticulum	1.14E-03
10	GO:0005849: mRNA cleavage factor complex	1.17E-03
11	GO:0071006: U2-type catalytic step 1 spliceosome	1.17E-03
12	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.17E-03
13	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.56E-03
14	GO:0016020: membrane	2.26E-03
15	GO:0030140: trans-Golgi network transport vesicle	2.45E-03
16	GO:0000974: Prp19 complex	2.45E-03
17	GO:0031597: cytosolic proteasome complex	2.94E-03
18	GO:0005777: peroxisome	2.97E-03
19	GO:0031595: nuclear proteasome complex	3.47E-03
20	GO:0016021: integral component of membrane	3.69E-03
21	GO:0012507: ER to Golgi transport vesicle membrane	4.02E-03
22	GO:0005779: integral component of peroxisomal membrane	4.60E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.60E-03
24	GO:0008540: proteasome regulatory particle, base subcomplex	5.85E-03
25	GO:0005794: Golgi apparatus	7.91E-03
26	GO:0016602: CCAAT-binding factor complex	8.66E-03
27	GO:0000502: proteasome complex	9.64E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	1.02E-02
29	GO:0010008: endosome membrane	1.18E-02
30	GO:0005802: trans-Golgi network	1.86E-02
31	GO:0005770: late endosome	1.93E-02
32	GO:0005778: peroxisomal membrane	2.68E-02
33	GO:0005737: cytoplasm	2.96E-02
34	GO:0005788: endoplasmic reticulum lumen	3.03E-02
35	GO:0000325: plant-type vacuole	3.90E-02
36	GO:0031201: SNARE complex	4.71E-02
37	GO:0031902: late endosome membrane	4.71E-02
38	GO:0005789: endoplasmic reticulum membrane	4.87E-02