GO Enrichment Analysis of Co-expressed Genes with
AT3G53100
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 4 | GO:0005991: trehalose metabolic process | 5.94E-05 |
| 5 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 5.94E-05 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 7.05E-05 |
| 7 | GO:0010020: chloroplast fission | 1.10E-04 |
| 8 | GO:0097054: L-glutamate biosynthetic process | 1.44E-04 |
| 9 | GO:0034755: iron ion transmembrane transport | 1.44E-04 |
| 10 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.75E-04 |
| 11 | GO:0090506: axillary shoot meristem initiation | 2.46E-04 |
| 12 | GO:0006168: adenine salvage | 3.57E-04 |
| 13 | GO:0043572: plastid fission | 3.57E-04 |
| 14 | GO:0010371: regulation of gibberellin biosynthetic process | 3.57E-04 |
| 15 | GO:0006166: purine ribonucleoside salvage | 3.57E-04 |
| 16 | GO:0007231: osmosensory signaling pathway | 3.57E-04 |
| 17 | GO:0006537: glutamate biosynthetic process | 3.57E-04 |
| 18 | GO:0019676: ammonia assimilation cycle | 4.78E-04 |
| 19 | GO:0009765: photosynthesis, light harvesting | 4.78E-04 |
| 20 | GO:0045727: positive regulation of translation | 4.78E-04 |
| 21 | GO:0015994: chlorophyll metabolic process | 4.78E-04 |
| 22 | GO:0033500: carbohydrate homeostasis | 4.78E-04 |
| 23 | GO:0006564: L-serine biosynthetic process | 6.05E-04 |
| 24 | GO:0010236: plastoquinone biosynthetic process | 6.05E-04 |
| 25 | GO:0016123: xanthophyll biosynthetic process | 6.05E-04 |
| 26 | GO:0044209: AMP salvage | 6.05E-04 |
| 27 | GO:0016120: carotene biosynthetic process | 6.05E-04 |
| 28 | GO:0018298: protein-chromophore linkage | 7.40E-04 |
| 29 | GO:0010405: arabinogalactan protein metabolic process | 7.40E-04 |
| 30 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 7.40E-04 |
| 31 | GO:0035435: phosphate ion transmembrane transport | 7.40E-04 |
| 32 | GO:0010189: vitamin E biosynthetic process | 8.82E-04 |
| 33 | GO:0010067: procambium histogenesis | 8.82E-04 |
| 34 | GO:0009645: response to low light intensity stimulus | 1.03E-03 |
| 35 | GO:0016559: peroxisome fission | 1.18E-03 |
| 36 | GO:0009819: drought recovery | 1.18E-03 |
| 37 | GO:0070413: trehalose metabolism in response to stress | 1.18E-03 |
| 38 | GO:0032544: plastid translation | 1.35E-03 |
| 39 | GO:0017004: cytochrome complex assembly | 1.35E-03 |
| 40 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 1.52E-03 |
| 41 | GO:0006879: cellular iron ion homeostasis | 2.07E-03 |
| 42 | GO:0006816: calcium ion transport | 2.07E-03 |
| 43 | GO:0008285: negative regulation of cell proliferation | 2.07E-03 |
| 44 | GO:0006820: anion transport | 2.27E-03 |
| 45 | GO:0010223: secondary shoot formation | 2.68E-03 |
| 46 | GO:0070588: calcium ion transmembrane transport | 2.89E-03 |
| 47 | GO:0005992: trehalose biosynthetic process | 3.34E-03 |
| 48 | GO:0010073: meristem maintenance | 3.57E-03 |
| 49 | GO:0061077: chaperone-mediated protein folding | 3.81E-03 |
| 50 | GO:0030245: cellulose catabolic process | 4.05E-03 |
| 51 | GO:0016226: iron-sulfur cluster assembly | 4.05E-03 |
| 52 | GO:0001944: vasculature development | 4.30E-03 |
| 53 | GO:0010227: floral organ abscission | 4.30E-03 |
| 54 | GO:0010089: xylem development | 4.55E-03 |
| 55 | GO:0016117: carotenoid biosynthetic process | 4.81E-03 |
| 56 | GO:0010087: phloem or xylem histogenesis | 5.07E-03 |
| 57 | GO:0010182: sugar mediated signaling pathway | 5.34E-03 |
| 58 | GO:0009658: chloroplast organization | 5.86E-03 |
| 59 | GO:0002229: defense response to oomycetes | 6.17E-03 |
| 60 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 7.51E-03 |
| 61 | GO:0015979: photosynthesis | 8.29E-03 |
| 62 | GO:0006508: proteolysis | 8.88E-03 |
| 63 | GO:0009832: plant-type cell wall biogenesis | 9.93E-03 |
| 64 | GO:0000160: phosphorelay signal transduction system | 9.93E-03 |
| 65 | GO:0010218: response to far red light | 1.03E-02 |
| 66 | GO:0032259: methylation | 1.03E-02 |
| 67 | GO:0009637: response to blue light | 1.13E-02 |
| 68 | GO:0009853: photorespiration | 1.13E-02 |
| 69 | GO:0010114: response to red light | 1.35E-02 |
| 70 | GO:0009744: response to sucrose | 1.35E-02 |
| 71 | GO:0009640: photomorphogenesis | 1.35E-02 |
| 72 | GO:0009644: response to high light intensity | 1.43E-02 |
| 73 | GO:0009736: cytokinin-activated signaling pathway | 1.67E-02 |
| 74 | GO:0006364: rRNA processing | 1.67E-02 |
| 75 | GO:0006813: potassium ion transport | 1.67E-02 |
| 76 | GO:0009735: response to cytokinin | 1.75E-02 |
| 77 | GO:0051301: cell division | 2.08E-02 |
| 78 | GO:0018105: peptidyl-serine phosphorylation | 2.19E-02 |
| 79 | GO:0009790: embryo development | 2.81E-02 |
| 80 | GO:0007623: circadian rhythm | 3.17E-02 |
| 81 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.28E-02 |
| 82 | GO:0071555: cell wall organization | 3.86E-02 |
| 83 | GO:0055114: oxidation-reduction process | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0070006: metalloaminopeptidase activity | 5.94E-05 |
| 4 | GO:0016041: glutamate synthase (ferredoxin) activity | 5.94E-05 |
| 5 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 5.94E-05 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 5.94E-05 |
| 7 | GO:0031409: pigment binding | 1.41E-04 |
| 8 | GO:0047746: chlorophyllase activity | 1.44E-04 |
| 9 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.44E-04 |
| 10 | GO:0008967: phosphoglycolate phosphatase activity | 1.44E-04 |
| 11 | GO:0003999: adenine phosphoribosyltransferase activity | 3.57E-04 |
| 12 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 3.57E-04 |
| 13 | GO:0004659: prenyltransferase activity | 4.78E-04 |
| 14 | GO:1990137: plant seed peroxidase activity | 4.78E-04 |
| 15 | GO:0008237: metallopeptidase activity | 5.12E-04 |
| 16 | GO:0016168: chlorophyll binding | 6.05E-04 |
| 17 | GO:0051538: 3 iron, 4 sulfur cluster binding | 6.05E-04 |
| 18 | GO:0008381: mechanically-gated ion channel activity | 6.05E-04 |
| 19 | GO:0004040: amidase activity | 6.05E-04 |
| 20 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 7.40E-04 |
| 21 | GO:0004222: metalloendopeptidase activity | 8.13E-04 |
| 22 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 8.82E-04 |
| 23 | GO:0051920: peroxiredoxin activity | 8.82E-04 |
| 24 | GO:0016209: antioxidant activity | 1.18E-03 |
| 25 | GO:0046872: metal ion binding | 1.47E-03 |
| 26 | GO:0005381: iron ion transmembrane transporter activity | 1.69E-03 |
| 27 | GO:0004177: aminopeptidase activity | 2.07E-03 |
| 28 | GO:0047372: acylglycerol lipase activity | 2.07E-03 |
| 29 | GO:0015386: potassium:proton antiporter activity | 2.07E-03 |
| 30 | GO:0005262: calcium channel activity | 2.47E-03 |
| 31 | GO:0015114: phosphate ion transmembrane transporter activity | 2.47E-03 |
| 32 | GO:0004565: beta-galactosidase activity | 2.47E-03 |
| 33 | GO:0008266: poly(U) RNA binding | 2.68E-03 |
| 34 | GO:0051536: iron-sulfur cluster binding | 3.34E-03 |
| 35 | GO:0005528: FK506 binding | 3.34E-03 |
| 36 | GO:0015079: potassium ion transmembrane transporter activity | 3.57E-03 |
| 37 | GO:0008324: cation transmembrane transporter activity | 3.57E-03 |
| 38 | GO:0004176: ATP-dependent peptidase activity | 3.81E-03 |
| 39 | GO:0033612: receptor serine/threonine kinase binding | 3.81E-03 |
| 40 | GO:0008810: cellulase activity | 4.30E-03 |
| 41 | GO:0005102: receptor binding | 4.81E-03 |
| 42 | GO:0005507: copper ion binding | 5.21E-03 |
| 43 | GO:0050662: coenzyme binding | 5.61E-03 |
| 44 | GO:0008168: methyltransferase activity | 5.65E-03 |
| 45 | GO:0004518: nuclease activity | 6.46E-03 |
| 46 | GO:0000156: phosphorelay response regulator activity | 6.75E-03 |
| 47 | GO:0016759: cellulose synthase activity | 7.05E-03 |
| 48 | GO:0016791: phosphatase activity | 7.05E-03 |
| 49 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 7.35E-03 |
| 50 | GO:0016597: amino acid binding | 7.65E-03 |
| 51 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 8.60E-03 |
| 52 | GO:0004683: calmodulin-dependent protein kinase activity | 8.92E-03 |
| 53 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 9.25E-03 |
| 54 | GO:0009055: electron carrier activity | 1.15E-02 |
| 55 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-02 |
| 56 | GO:0051287: NAD binding | 1.55E-02 |
| 57 | GO:0030599: pectinesterase activity | 2.06E-02 |
| 58 | GO:0016787: hydrolase activity | 2.14E-02 |
| 59 | GO:0016758: transferase activity, transferring hexosyl groups | 2.47E-02 |
| 60 | GO:0019843: rRNA binding | 2.52E-02 |
| 61 | GO:0030246: carbohydrate binding | 2.57E-02 |
| 62 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.57E-02 |
| 63 | GO:0005516: calmodulin binding | 2.88E-02 |
| 64 | GO:0008017: microtubule binding | 3.28E-02 |
| 65 | GO:0005509: calcium ion binding | 3.57E-02 |
| 66 | GO:0042802: identical protein binding | 3.76E-02 |
| 67 | GO:0016757: transferase activity, transferring glycosyl groups | 3.80E-02 |
| 68 | GO:0003824: catalytic activity | 4.24E-02 |
| 69 | GO:0004601: peroxidase activity | 4.33E-02 |
| 70 | GO:0016788: hydrolase activity, acting on ester bonds | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009941: chloroplast envelope | 2.46E-12 |
| 2 | GO:0009507: chloroplast | 3.55E-12 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 5.09E-06 |
| 4 | GO:0010287: plastoglobule | 1.64E-05 |
| 5 | GO:0009570: chloroplast stroma | 3.00E-05 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.03E-05 |
| 7 | GO:0009782: photosystem I antenna complex | 5.94E-05 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 5.94E-05 |
| 9 | GO:0030076: light-harvesting complex | 1.25E-04 |
| 10 | GO:0048046: apoplast | 1.66E-04 |
| 11 | GO:0009706: chloroplast inner membrane | 2.16E-04 |
| 12 | GO:0009534: chloroplast thylakoid | 7.49E-04 |
| 13 | GO:0031969: chloroplast membrane | 9.98E-04 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 1.03E-03 |
| 15 | GO:0005811: lipid particle | 1.35E-03 |
| 16 | GO:0009543: chloroplast thylakoid lumen | 2.77E-03 |
| 17 | GO:0046658: anchored component of plasma membrane | 5.02E-03 |
| 18 | GO:0009522: photosystem I | 5.61E-03 |
| 19 | GO:0016021: integral component of membrane | 5.63E-03 |
| 20 | GO:0009707: chloroplast outer membrane | 9.59E-03 |
| 21 | GO:0009536: plastid | 1.06E-02 |
| 22 | GO:0005886: plasma membrane | 1.16E-02 |
| 23 | GO:0009579: thylakoid | 2.29E-02 |
| 24 | GO:0016020: membrane | 2.49E-02 |
| 25 | GO:0005759: mitochondrial matrix | 2.97E-02 |
| 26 | GO:0031225: anchored component of membrane | 2.98E-02 |
| 27 | GO:0005615: extracellular space | 3.44E-02 |
| 28 | GO:0005618: cell wall | 4.59E-02 |