co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072321: chaperone-mediated protein transport	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:0071731: response to nitric oxide	0.00E+00
4	GO:0006412: translation	2.49E-40
5	GO:0042254: ribosome biogenesis	6.74E-10
6	GO:0006626: protein targeting to mitochondrion	2.08E-08
7	GO:0002181: cytoplasmic translation	1.31E-06
8	GO:0007005: mitochondrion organization	9.31E-06
9	GO:0009955: adaxial/abaxial pattern specification	2.20E-05
10	GO:0046686: response to cadmium ion	4.83E-05
11	GO:0009651: response to salt stress	7.19E-05
12	GO:0006407: rRNA export from nucleus	7.90E-05
13	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	7.90E-05
14	GO:0000494: box C/D snoRNA 3'-end processing	7.90E-05
15	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.90E-05
16	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.90E-05
17	GO:1990258: histone glutamine methylation	7.90E-05
18	GO:0009735: response to cytokinin	1.36E-04
19	GO:0048569: post-embryonic animal organ development	1.89E-04
20	GO:0000027: ribosomal large subunit assembly	2.34E-04
21	GO:0006457: protein folding	2.71E-04
22	GO:0042256: mature ribosome assembly	3.17E-04
23	GO:0045039: protein import into mitochondrial inner membrane	3.17E-04
24	GO:0009408: response to heat	4.19E-04
25	GO:0006986: response to unfolded protein	4.58E-04
26	GO:0070301: cellular response to hydrogen peroxide	4.58E-04
27	GO:0051085: chaperone mediated protein folding requiring cofactor	4.58E-04
28	GO:0006241: CTP biosynthetic process	4.58E-04
29	GO:0006165: nucleoside diphosphate phosphorylation	4.58E-04
30	GO:0006228: UTP biosynthetic process	4.58E-04
31	GO:0051131: chaperone-mediated protein complex assembly	4.58E-04
32	GO:0006183: GTP biosynthetic process	6.09E-04
33	GO:0031365: N-terminal protein amino acid modification	7.72E-04
34	GO:0071493: cellular response to UV-B	7.72E-04
35	GO:0031167: rRNA methylation	7.72E-04
36	GO:0000470: maturation of LSU-rRNA	9.42E-04
37	GO:0010043: response to zinc ion	1.21E-03
38	GO:0032880: regulation of protein localization	1.31E-03
39	GO:0000028: ribosomal small subunit assembly	1.51E-03
40	GO:0050821: protein stabilization	1.51E-03
41	GO:0001510: RNA methylation	1.72E-03
42	GO:0006189: 'de novo' IMP biosynthetic process	1.95E-03
43	GO:0090332: stomatal closure	2.18E-03
44	GO:0006364: rRNA processing	2.27E-03
45	GO:0010162: seed dormancy process	2.41E-03
46	GO:0009793: embryo development ending in seed dormancy	2.65E-03
47	GO:0016485: protein processing	2.66E-03
48	GO:0006820: anion transport	2.92E-03
49	GO:0009944: polarity specification of adaxial/abaxial axis	4.31E-03
50	GO:0030150: protein import into mitochondrial matrix	4.31E-03
51	GO:0010187: negative regulation of seed germination	4.31E-03
52	GO:0015992: proton transport	4.92E-03
53	GO:0061077: chaperone-mediated protein folding	4.92E-03
54	GO:0030433: ubiquitin-dependent ERAD pathway	5.24E-03
55	GO:0009294: DNA mediated transformation	5.56E-03
56	GO:0008033: tRNA processing	6.57E-03
57	GO:0010197: polar nucleus fusion	6.92E-03
58	GO:0032502: developmental process	8.39E-03
59	GO:0009630: gravitropism	8.39E-03
60	GO:0006414: translational elongation	8.95E-03
61	GO:0010286: heat acclimation	9.56E-03
62	GO:0009615: response to virus	1.04E-02
63	GO:0009816: defense response to bacterium, incompatible interaction	1.08E-02
64	GO:0016049: cell growth	1.21E-02
65	GO:0006811: ion transport	1.34E-02
66	GO:0048527: lateral root development	1.38E-02
67	GO:0015031: protein transport	1.79E-02
68	GO:0000154: rRNA modification	1.92E-02
69	GO:0009909: regulation of flower development	2.35E-02
70	GO:0016569: covalent chromatin modification	2.69E-02
71	GO:0051726: regulation of cell cycle	2.93E-02
72	GO:0006633: fatty acid biosynthetic process	3.88E-02
73	GO:0009451: RNA modification	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	1.04E-45
5	GO:0003729: mRNA binding	1.17E-10
6	GO:0003723: RNA binding	1.00E-06
7	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.21E-06
8	GO:0030515: snoRNA binding	3.00E-05
9	GO:1990259: histone-glutamine methyltransferase activity	7.90E-05
10	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	7.90E-05
11	GO:0008649: rRNA methyltransferase activity	3.17E-04
12	GO:0070180: large ribosomal subunit rRNA binding	3.17E-04
13	GO:0005507: copper ion binding	3.24E-04
14	GO:0051082: unfolded protein binding	3.57E-04
15	GO:0004550: nucleoside diphosphate kinase activity	4.58E-04
16	GO:0019843: rRNA binding	4.76E-04
17	GO:0002020: protease binding	7.72E-04
18	GO:0004017: adenylate kinase activity	1.12E-03
19	GO:0008235: metalloexopeptidase activity	1.31E-03
20	GO:0003746: translation elongation factor activity	1.32E-03
21	GO:0015288: porin activity	1.51E-03
22	GO:0008308: voltage-gated anion channel activity	1.72E-03
23	GO:0004177: aminopeptidase activity	2.66E-03
24	GO:0015266: protein channel activity	3.18E-03
25	GO:0004407: histone deacetylase activity	4.31E-03
26	GO:0051087: chaperone binding	4.61E-03
27	GO:0050897: cobalt ion binding	1.38E-02
28	GO:0003924: GTPase activity	1.57E-02
29	GO:0005524: ATP binding	1.82E-02
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.97E-02
31	GO:0051287: NAD binding	2.02E-02
32	GO:0008026: ATP-dependent helicase activity	2.93E-02
33	GO:0008565: protein transporter activity	3.75E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0022626: cytosolic ribosome	5.56E-38
3	GO:0022625: cytosolic large ribosomal subunit	1.30E-28
4	GO:0005730: nucleolus	1.39E-27
5	GO:0005840: ribosome	5.74E-25
6	GO:0022627: cytosolic small ribosomal subunit	9.23E-19
7	GO:0005829: cytosol	1.65E-16
8	GO:0009506: plasmodesma	3.75E-14
9	GO:0005774: vacuolar membrane	5.21E-12
10	GO:0005737: cytoplasm	6.80E-10
11	GO:0015934: large ribosomal subunit	9.67E-10
12	GO:0005773: vacuole	1.33E-08
13	GO:0005618: cell wall	2.92E-07
14	GO:0016020: membrane	3.24E-07
15	GO:0005758: mitochondrial intermembrane space	5.65E-06
16	GO:0031428: box C/D snoRNP complex	1.54E-05
17	GO:0005742: mitochondrial outer membrane translocase complex	5.02E-05
18	GO:0009507: chloroplast	7.76E-05
19	GO:0030686: 90S preribosome	7.90E-05
20	GO:0032040: small-subunit processome	1.25E-04
21	GO:0005886: plasma membrane	1.49E-04
22	GO:0015935: small ribosomal subunit	2.86E-04
23	GO:0005743: mitochondrial inner membrane	3.73E-04
24	GO:0005759: mitochondrial matrix	6.34E-04
25	GO:0016363: nuclear matrix	1.12E-03
26	GO:0005739: mitochondrion	1.54E-03
27	GO:0046930: pore complex	1.72E-03
28	GO:0015030: Cajal body	2.18E-03
29	GO:0005747: mitochondrial respiratory chain complex I	2.76E-03
30	GO:0005741: mitochondrial outer membrane	4.92E-03
31	GO:0005783: endoplasmic reticulum	5.79E-03
32	GO:0016592: mediator complex	8.39E-03
33	GO:0005788: endoplasmic reticulum lumen	1.08E-02
34	GO:0005635: nuclear envelope	2.29E-02