GO Enrichment Analysis of Co-expressed Genes with
AT3G52940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 5 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0016117: carotenoid biosynthetic process | 6.49E-06 |
| 7 | GO:0045489: pectin biosynthetic process | 9.05E-06 |
| 8 | GO:0006546: glycine catabolic process | 3.99E-05 |
| 9 | GO:0071555: cell wall organization | 4.01E-05 |
| 10 | GO:0016123: xanthophyll biosynthetic process | 6.36E-05 |
| 11 | GO:0016051: carbohydrate biosynthetic process | 8.05E-05 |
| 12 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 8.61E-05 |
| 13 | GO:0000271: polysaccharide biosynthetic process | 1.68E-04 |
| 14 | GO:0010583: response to cyclopentenone | 2.75E-04 |
| 15 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 5.29E-04 |
| 16 | GO:2000123: positive regulation of stomatal complex development | 5.29E-04 |
| 17 | GO:0043039: tRNA aminoacylation | 5.29E-04 |
| 18 | GO:0006695: cholesterol biosynthetic process | 5.29E-04 |
| 19 | GO:0006650: glycerophospholipid metabolic process | 5.29E-04 |
| 20 | GO:0010020: chloroplast fission | 7.56E-04 |
| 21 | GO:0019253: reductive pentose-phosphate cycle | 7.56E-04 |
| 22 | GO:0006000: fructose metabolic process | 8.60E-04 |
| 23 | GO:0006518: peptide metabolic process | 8.60E-04 |
| 24 | GO:0006696: ergosterol biosynthetic process | 8.60E-04 |
| 25 | GO:0006065: UDP-glucuronate biosynthetic process | 8.60E-04 |
| 26 | GO:0019344: cysteine biosynthetic process | 1.04E-03 |
| 27 | GO:0046902: regulation of mitochondrial membrane permeability | 1.23E-03 |
| 28 | GO:0043572: plastid fission | 1.23E-03 |
| 29 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.23E-03 |
| 30 | GO:0007231: osmosensory signaling pathway | 1.23E-03 |
| 31 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.64E-03 |
| 32 | GO:0009765: photosynthesis, light harvesting | 1.64E-03 |
| 33 | GO:0045727: positive regulation of translation | 1.64E-03 |
| 34 | GO:0006749: glutathione metabolic process | 1.64E-03 |
| 35 | GO:2000122: negative regulation of stomatal complex development | 1.64E-03 |
| 36 | GO:0033500: carbohydrate homeostasis | 1.64E-03 |
| 37 | GO:2000038: regulation of stomatal complex development | 1.64E-03 |
| 38 | GO:0010037: response to carbon dioxide | 1.64E-03 |
| 39 | GO:0006808: regulation of nitrogen utilization | 1.64E-03 |
| 40 | GO:0015976: carbon utilization | 1.64E-03 |
| 41 | GO:0006810: transport | 1.78E-03 |
| 42 | GO:0010375: stomatal complex patterning | 2.09E-03 |
| 43 | GO:0016120: carotene biosynthetic process | 2.09E-03 |
| 44 | GO:0071554: cell wall organization or biogenesis | 2.50E-03 |
| 45 | GO:0006555: methionine metabolic process | 2.57E-03 |
| 46 | GO:0006796: phosphate-containing compound metabolic process | 2.57E-03 |
| 47 | GO:0010190: cytochrome b6f complex assembly | 2.57E-03 |
| 48 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.09E-03 |
| 49 | GO:0017148: negative regulation of translation | 3.09E-03 |
| 50 | GO:0009854: oxidative photosynthetic carbon pathway | 3.09E-03 |
| 51 | GO:0010555: response to mannitol | 3.09E-03 |
| 52 | GO:0007155: cell adhesion | 4.23E-03 |
| 53 | GO:0008610: lipid biosynthetic process | 4.23E-03 |
| 54 | GO:0009642: response to light intensity | 4.23E-03 |
| 55 | GO:0009690: cytokinin metabolic process | 4.23E-03 |
| 56 | GO:0052543: callose deposition in cell wall | 4.23E-03 |
| 57 | GO:0006633: fatty acid biosynthetic process | 4.31E-03 |
| 58 | GO:0009932: cell tip growth | 4.84E-03 |
| 59 | GO:0006002: fructose 6-phosphate metabolic process | 4.84E-03 |
| 60 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 4.84E-03 |
| 61 | GO:0009657: plastid organization | 4.84E-03 |
| 62 | GO:0032544: plastid translation | 4.84E-03 |
| 63 | GO:0045337: farnesyl diphosphate biosynthetic process | 5.48E-03 |
| 64 | GO:0010206: photosystem II repair | 5.48E-03 |
| 65 | GO:0033384: geranyl diphosphate biosynthetic process | 5.48E-03 |
| 66 | GO:0048589: developmental growth | 5.48E-03 |
| 67 | GO:0009056: catabolic process | 5.48E-03 |
| 68 | GO:0055114: oxidation-reduction process | 6.07E-03 |
| 69 | GO:0035999: tetrahydrofolate interconversion | 6.15E-03 |
| 70 | GO:0016573: histone acetylation | 6.15E-03 |
| 71 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 6.85E-03 |
| 72 | GO:0006535: cysteine biosynthetic process from serine | 6.85E-03 |
| 73 | GO:0043069: negative regulation of programmed cell death | 6.85E-03 |
| 74 | GO:0000038: very long-chain fatty acid metabolic process | 7.58E-03 |
| 75 | GO:0006816: calcium ion transport | 7.58E-03 |
| 76 | GO:0009773: photosynthetic electron transport in photosystem I | 7.58E-03 |
| 77 | GO:0019684: photosynthesis, light reaction | 7.58E-03 |
| 78 | GO:0006415: translational termination | 7.58E-03 |
| 79 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.58E-03 |
| 80 | GO:0000272: polysaccharide catabolic process | 7.58E-03 |
| 81 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.58E-03 |
| 82 | GO:0009744: response to sucrose | 7.68E-03 |
| 83 | GO:0042546: cell wall biogenesis | 7.99E-03 |
| 84 | GO:0009658: chloroplast organization | 8.46E-03 |
| 85 | GO:0006508: proteolysis | 8.79E-03 |
| 86 | GO:0009735: response to cytokinin | 8.93E-03 |
| 87 | GO:0042742: defense response to bacterium | 9.09E-03 |
| 88 | GO:0009767: photosynthetic electron transport chain | 9.11E-03 |
| 89 | GO:0005986: sucrose biosynthetic process | 9.11E-03 |
| 90 | GO:0050826: response to freezing | 9.11E-03 |
| 91 | GO:0009725: response to hormone | 9.11E-03 |
| 92 | GO:0006094: gluconeogenesis | 9.11E-03 |
| 93 | GO:0010207: photosystem II assembly | 9.92E-03 |
| 94 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.07E-02 |
| 95 | GO:0070588: calcium ion transmembrane transport | 1.07E-02 |
| 96 | GO:0080167: response to karrikin | 1.11E-02 |
| 97 | GO:0006468: protein phosphorylation | 1.14E-02 |
| 98 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.16E-02 |
| 99 | GO:0006338: chromatin remodeling | 1.25E-02 |
| 100 | GO:0007010: cytoskeleton organization | 1.25E-02 |
| 101 | GO:0006418: tRNA aminoacylation for protein translation | 1.34E-02 |
| 102 | GO:0007017: microtubule-based process | 1.34E-02 |
| 103 | GO:0061077: chaperone-mediated protein folding | 1.43E-02 |
| 104 | GO:0006730: one-carbon metabolic process | 1.53E-02 |
| 105 | GO:0009409: response to cold | 1.53E-02 |
| 106 | GO:0019748: secondary metabolic process | 1.53E-02 |
| 107 | GO:0009294: DNA mediated transformation | 1.62E-02 |
| 108 | GO:0040007: growth | 1.62E-02 |
| 109 | GO:0006284: base-excision repair | 1.72E-02 |
| 110 | GO:0016042: lipid catabolic process | 1.76E-02 |
| 111 | GO:0005975: carbohydrate metabolic process | 1.87E-02 |
| 112 | GO:0042631: cellular response to water deprivation | 1.93E-02 |
| 113 | GO:0042335: cuticle development | 1.93E-02 |
| 114 | GO:0000413: protein peptidyl-prolyl isomerization | 1.93E-02 |
| 115 | GO:0008360: regulation of cell shape | 2.03E-02 |
| 116 | GO:0019252: starch biosynthetic process | 2.25E-02 |
| 117 | GO:0008654: phospholipid biosynthetic process | 2.25E-02 |
| 118 | GO:0007264: small GTPase mediated signal transduction | 2.47E-02 |
| 119 | GO:0032502: developmental process | 2.47E-02 |
| 120 | GO:0007623: circadian rhythm | 2.56E-02 |
| 121 | GO:0007267: cell-cell signaling | 2.83E-02 |
| 122 | GO:0007166: cell surface receptor signaling pathway | 2.93E-02 |
| 123 | GO:0016126: sterol biosynthetic process | 3.07E-02 |
| 124 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 3.19E-02 |
| 125 | GO:0010411: xyloglucan metabolic process | 3.45E-02 |
| 126 | GO:0016311: dephosphorylation | 3.58E-02 |
| 127 | GO:0009817: defense response to fungus, incompatible interaction | 3.71E-02 |
| 128 | GO:0048767: root hair elongation | 3.84E-02 |
| 129 | GO:0009407: toxin catabolic process | 3.97E-02 |
| 130 | GO:0010119: regulation of stomatal movement | 4.11E-02 |
| 131 | GO:0016310: phosphorylation | 4.15E-02 |
| 132 | GO:0009853: photorespiration | 4.39E-02 |
| 133 | GO:0006839: mitochondrial transport | 4.81E-02 |
| 134 | GO:0006631: fatty acid metabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 4 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 5 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 6 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 7 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.04E-04 |
| 8 | GO:0016757: transferase activity, transferring glycosyl groups | 1.49E-04 |
| 9 | GO:0019901: protein kinase binding | 2.29E-04 |
| 10 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 2.39E-04 |
| 11 | GO:0080132: fatty acid alpha-hydroxylase activity | 2.39E-04 |
| 12 | GO:0004831: tyrosine-tRNA ligase activity | 2.39E-04 |
| 13 | GO:0051996: squalene synthase activity | 2.39E-04 |
| 14 | GO:0010313: phytochrome binding | 2.39E-04 |
| 15 | GO:0003838: sterol 24-C-methyltransferase activity | 2.39E-04 |
| 16 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 2.39E-04 |
| 17 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.53E-04 |
| 18 | GO:0016758: transferase activity, transferring hexosyl groups | 5.20E-04 |
| 19 | GO:0004047: aminomethyltransferase activity | 5.29E-04 |
| 20 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 5.29E-04 |
| 21 | GO:0048531: beta-1,3-galactosyltransferase activity | 5.29E-04 |
| 22 | GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity | 5.29E-04 |
| 23 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.29E-04 |
| 24 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 5.29E-04 |
| 25 | GO:0050017: L-3-cyanoalanine synthase activity | 5.29E-04 |
| 26 | GO:0010291: carotene beta-ring hydroxylase activity | 5.29E-04 |
| 27 | GO:0042389: omega-3 fatty acid desaturase activity | 5.29E-04 |
| 28 | GO:0004618: phosphoglycerate kinase activity | 5.29E-04 |
| 29 | GO:0010297: heteropolysaccharide binding | 5.29E-04 |
| 30 | GO:0052689: carboxylic ester hydrolase activity | 5.83E-04 |
| 31 | GO:0017150: tRNA dihydrouridine synthase activity | 8.60E-04 |
| 32 | GO:0003979: UDP-glucose 6-dehydrogenase activity | 8.60E-04 |
| 33 | GO:0005528: FK506 binding | 1.04E-03 |
| 34 | GO:0004185: serine-type carboxypeptidase activity | 1.07E-03 |
| 35 | GO:0001872: (1->3)-beta-D-glucan binding | 1.23E-03 |
| 36 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.23E-03 |
| 37 | GO:0048027: mRNA 5'-UTR binding | 1.23E-03 |
| 38 | GO:0016149: translation release factor activity, codon specific | 1.23E-03 |
| 39 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.29E-03 |
| 40 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.64E-03 |
| 41 | GO:0016788: hydrolase activity, acting on ester bonds | 1.75E-03 |
| 42 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.09E-03 |
| 43 | GO:0008374: O-acyltransferase activity | 2.09E-03 |
| 44 | GO:0030414: peptidase inhibitor activity | 2.09E-03 |
| 45 | GO:0005471: ATP:ADP antiporter activity | 2.09E-03 |
| 46 | GO:0080030: methyl indole-3-acetate esterase activity | 2.57E-03 |
| 47 | GO:0042578: phosphoric ester hydrolase activity | 2.57E-03 |
| 48 | GO:0016462: pyrophosphatase activity | 2.57E-03 |
| 49 | GO:0016759: cellulose synthase activity | 3.03E-03 |
| 50 | GO:0004124: cysteine synthase activity | 3.09E-03 |
| 51 | GO:0051920: peroxiredoxin activity | 3.09E-03 |
| 52 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.09E-03 |
| 53 | GO:0051753: mannan synthase activity | 3.09E-03 |
| 54 | GO:0005200: structural constituent of cytoskeleton | 3.21E-03 |
| 55 | GO:0016413: O-acetyltransferase activity | 3.41E-03 |
| 56 | GO:0004427: inorganic diphosphatase activity | 3.64E-03 |
| 57 | GO:0016209: antioxidant activity | 4.23E-03 |
| 58 | GO:0003843: 1,3-beta-D-glucan synthase activity | 4.84E-03 |
| 59 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.84E-03 |
| 60 | GO:0004222: metalloendopeptidase activity | 5.18E-03 |
| 61 | GO:0004337: geranyltranstransferase activity | 5.48E-03 |
| 62 | GO:0003747: translation release factor activity | 5.48E-03 |
| 63 | GO:0004672: protein kinase activity | 5.71E-03 |
| 64 | GO:0004161: dimethylallyltranstransferase activity | 7.58E-03 |
| 65 | GO:0004565: beta-galactosidase activity | 9.11E-03 |
| 66 | GO:0004089: carbonate dehydratase activity | 9.11E-03 |
| 67 | GO:0031072: heat shock protein binding | 9.11E-03 |
| 68 | GO:0005262: calcium channel activity | 9.11E-03 |
| 69 | GO:0004674: protein serine/threonine kinase activity | 9.51E-03 |
| 70 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.16E-02 |
| 71 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.16E-02 |
| 72 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.16E-02 |
| 73 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.27E-02 |
| 74 | GO:0004650: polygalacturonase activity | 1.35E-02 |
| 75 | GO:0016740: transferase activity | 1.38E-02 |
| 76 | GO:0004176: ATP-dependent peptidase activity | 1.43E-02 |
| 77 | GO:0030570: pectate lyase activity | 1.62E-02 |
| 78 | GO:0003756: protein disulfide isomerase activity | 1.72E-02 |
| 79 | GO:0005507: copper ion binding | 1.74E-02 |
| 80 | GO:0003924: GTPase activity | 1.82E-02 |
| 81 | GO:0004812: aminoacyl-tRNA ligase activity | 1.82E-02 |
| 82 | GO:0019843: rRNA binding | 1.86E-02 |
| 83 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.91E-02 |
| 84 | GO:0050662: coenzyme binding | 2.14E-02 |
| 85 | GO:0004872: receptor activity | 2.25E-02 |
| 86 | GO:0048038: quinone binding | 2.36E-02 |
| 87 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.36E-02 |
| 88 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.39E-02 |
| 89 | GO:0004518: nuclease activity | 2.47E-02 |
| 90 | GO:0008483: transaminase activity | 2.83E-02 |
| 91 | GO:0008237: metallopeptidase activity | 2.83E-02 |
| 92 | GO:0016597: amino acid binding | 2.95E-02 |
| 93 | GO:0030247: polysaccharide binding | 3.45E-02 |
| 94 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.45E-02 |
| 95 | GO:0008236: serine-type peptidase activity | 3.58E-02 |
| 96 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.97E-02 |
| 97 | GO:0003993: acid phosphatase activity | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031224: intrinsic component of membrane | 0.00E+00 |
| 2 | GO:0009571: proplastid stroma | 0.00E+00 |
| 3 | GO:0009941: chloroplast envelope | 8.02E-10 |
| 4 | GO:0009570: chloroplast stroma | 7.00E-08 |
| 5 | GO:0009507: chloroplast | 5.06E-07 |
| 6 | GO:0031225: anchored component of membrane | 2.02E-06 |
| 7 | GO:0046658: anchored component of plasma membrane | 2.58E-06 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 5.54E-06 |
| 9 | GO:0005576: extracellular region | 5.64E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 5.66E-06 |
| 11 | GO:0009579: thylakoid | 5.67E-06 |
| 12 | GO:0048046: apoplast | 1.08E-05 |
| 13 | GO:0009505: plant-type cell wall | 1.58E-05 |
| 14 | GO:0031977: thylakoid lumen | 1.10E-04 |
| 15 | GO:0005794: Golgi apparatus | 1.52E-04 |
| 16 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.39E-04 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.23E-04 |
| 18 | GO:0010319: stromule | 3.53E-04 |
| 19 | GO:0000139: Golgi membrane | 4.40E-04 |
| 20 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 5.29E-04 |
| 21 | GO:0042170: plastid membrane | 5.29E-04 |
| 22 | GO:0009534: chloroplast thylakoid | 9.65E-04 |
| 23 | GO:0005960: glycine cleavage complex | 1.23E-03 |
| 24 | GO:0009506: plasmodesma | 1.71E-03 |
| 25 | GO:0005618: cell wall | 2.10E-03 |
| 26 | GO:0010168: ER body | 2.57E-03 |
| 27 | GO:0000123: histone acetyltransferase complex | 3.64E-03 |
| 28 | GO:0005773: vacuole | 4.44E-03 |
| 29 | GO:0000148: 1,3-beta-D-glucan synthase complex | 4.84E-03 |
| 30 | GO:0045298: tubulin complex | 5.48E-03 |
| 31 | GO:0016021: integral component of membrane | 6.04E-03 |
| 32 | GO:0009508: plastid chromosome | 9.11E-03 |
| 33 | GO:0030095: chloroplast photosystem II | 9.92E-03 |
| 34 | GO:0031969: chloroplast membrane | 1.11E-02 |
| 35 | GO:0005886: plasma membrane | 1.22E-02 |
| 36 | GO:0009654: photosystem II oxygen evolving complex | 1.34E-02 |
| 37 | GO:0042651: thylakoid membrane | 1.34E-02 |
| 38 | GO:0009532: plastid stroma | 1.43E-02 |
| 39 | GO:0009706: chloroplast inner membrane | 1.48E-02 |
| 40 | GO:0010287: plastoglobule | 1.76E-02 |
| 41 | GO:0019898: extrinsic component of membrane | 2.25E-02 |
| 42 | GO:0009295: nucleoid | 2.83E-02 |
| 43 | GO:0000325: plant-type vacuole | 4.11E-02 |
| 44 | GO:0005874: microtubule | 4.73E-02 |