co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0010336: gibberellic acid homeostasis	0.00E+00
3	GO:0009715: chalcone biosynthetic process	0.00E+00
4	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0090393: sepal giant cell development	0.00E+00
7	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
8	GO:0071370: cellular response to gibberellin stimulus	0.00E+00
9	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
10	GO:0015843: methylammonium transport	0.00E+00
11	GO:0019464: glycine decarboxylation via glycine cleavage system	2.25E-05
12	GO:0006546: glycine catabolic process	2.25E-05
13	GO:0009902: chloroplast relocation	2.25E-05
14	GO:0007155: cell adhesion	1.30E-04
15	GO:0006810: transport	1.51E-04
16	GO:1901349: glucosinolate transport	1.71E-04
17	GO:1902265: abscisic acid homeostasis	1.71E-04
18	GO:0090449: phloem glucosinolate loading	1.71E-04
19	GO:0006659: phosphatidylserine biosynthetic process	1.71E-04
20	GO:0000066: mitochondrial ornithine transport	1.71E-04
21	GO:0000272: polysaccharide catabolic process	3.25E-04
22	GO:0009629: response to gravity	3.87E-04
23	GO:0015786: UDP-glucose transport	3.87E-04
24	GO:0007154: cell communication	3.87E-04
25	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.87E-04
26	GO:0019253: reductive pentose-phosphate cycle	4.79E-04
27	GO:0005985: sucrose metabolic process	5.37E-04
28	GO:0009833: plant-type primary cell wall biogenesis	5.97E-04
29	GO:0031022: nuclear migration along microfilament	6.32E-04
30	GO:0006000: fructose metabolic process	6.32E-04
31	GO:0017157: regulation of exocytosis	6.32E-04
32	GO:0044375: regulation of peroxisome size	6.32E-04
33	GO:0005977: glycogen metabolic process	6.32E-04
34	GO:0015783: GDP-fucose transport	6.32E-04
35	GO:0006011: UDP-glucose metabolic process	6.32E-04
36	GO:0072334: UDP-galactose transmembrane transport	9.04E-04
37	GO:0051016: barbed-end actin filament capping	9.04E-04
38	GO:0015696: ammonium transport	9.04E-04
39	GO:0006168: adenine salvage	9.04E-04
40	GO:0032877: positive regulation of DNA endoreduplication	9.04E-04
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.04E-04
42	GO:0006166: purine ribonucleoside salvage	9.04E-04
43	GO:0019722: calcium-mediated signaling	1.02E-03
44	GO:0071555: cell wall organization	1.04E-03
45	GO:0080167: response to karrikin	1.15E-03
46	GO:0042335: cuticle development	1.19E-03
47	GO:0009765: photosynthesis, light harvesting	1.20E-03
48	GO:0045727: positive regulation of translation	1.20E-03
49	GO:0072488: ammonium transmembrane transport	1.20E-03
50	GO:0006021: inositol biosynthetic process	1.20E-03
51	GO:0009694: jasmonic acid metabolic process	1.20E-03
52	GO:0006542: glutamine biosynthetic process	1.20E-03
53	GO:0019676: ammonia assimilation cycle	1.20E-03
54	GO:0045489: pectin biosynthetic process	1.28E-03
55	GO:0032876: negative regulation of DNA endoreduplication	1.52E-03
56	GO:0016120: carotene biosynthetic process	1.52E-03
57	GO:0044209: AMP salvage	1.52E-03
58	GO:0010942: positive regulation of cell death	1.87E-03
59	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.87E-03
60	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.87E-03
61	GO:0007267: cell-cell signaling	2.01E-03
62	GO:0045926: negative regulation of growth	2.24E-03
63	GO:0017148: negative regulation of translation	2.24E-03
64	GO:0009903: chloroplast avoidance movement	2.24E-03
65	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.24E-03
66	GO:0005975: carbohydrate metabolic process	2.37E-03
67	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.06E-03
68	GO:0045010: actin nucleation	3.06E-03
69	GO:0031540: regulation of anthocyanin biosynthetic process	3.06E-03
70	GO:0052543: callose deposition in cell wall	3.06E-03
71	GO:0016559: peroxisome fission	3.06E-03
72	GO:0009617: response to bacterium	3.32E-03
73	GO:0006002: fructose 6-phosphate metabolic process	3.50E-03
74	GO:0022900: electron transport chain	3.50E-03
75	GO:0048193: Golgi vesicle transport	3.50E-03
76	GO:0032544: plastid translation	3.50E-03
77	GO:0007389: pattern specification process	3.50E-03
78	GO:0009853: photorespiration	3.71E-03
79	GO:0016051: carbohydrate biosynthetic process	3.71E-03
80	GO:0009637: response to blue light	3.71E-03
81	GO:0006754: ATP biosynthetic process	3.95E-03
82	GO:0009056: catabolic process	3.95E-03
83	GO:0051555: flavonol biosynthetic process	4.93E-03
84	GO:0010192: mucilage biosynthetic process	4.93E-03
85	GO:0042546: cell wall biogenesis	4.97E-03
86	GO:0009611: response to wounding	5.12E-03
87	GO:0000038: very long-chain fatty acid metabolic process	5.45E-03
88	GO:0009773: photosynthetic electron transport in photosystem I	5.45E-03
89	GO:0018119: peptidyl-cysteine S-nitrosylation	5.45E-03
90	GO:0005986: sucrose biosynthetic process	6.54E-03
91	GO:0030048: actin filament-based movement	6.54E-03
92	GO:0030036: actin cytoskeleton organization	6.54E-03
93	GO:0009725: response to hormone	6.54E-03
94	GO:0006094: gluconeogenesis	6.54E-03
95	GO:0009767: photosynthetic electron transport chain	6.54E-03
96	GO:0006857: oligopeptide transport	6.89E-03
97	GO:0007031: peroxisome organization	7.69E-03
98	GO:0042343: indole glucosinolate metabolic process	7.69E-03
99	GO:0009825: multidimensional cell growth	7.69E-03
100	GO:0006833: water transport	8.30E-03
101	GO:0046686: response to cadmium ion	8.54E-03
102	GO:0009624: response to nematode	9.16E-03
103	GO:0009695: jasmonic acid biosynthetic process	9.56E-03
104	GO:0009768: photosynthesis, light harvesting in photosystem I	9.56E-03
105	GO:0016042: lipid catabolic process	9.60E-03
106	GO:0031408: oxylipin biosynthetic process	1.02E-02
107	GO:0006366: transcription from RNA polymerase II promoter	1.02E-02
108	GO:0098542: defense response to other organism	1.02E-02
109	GO:0006730: one-carbon metabolic process	1.09E-02
110	GO:0080092: regulation of pollen tube growth	1.09E-02
111	GO:0009294: DNA mediated transformation	1.16E-02
112	GO:0016117: carotenoid biosynthetic process	1.30E-02
113	GO:0015991: ATP hydrolysis coupled proton transport	1.37E-02
114	GO:0042631: cellular response to water deprivation	1.37E-02
115	GO:0000271: polysaccharide biosynthetic process	1.37E-02
116	GO:0080022: primary root development	1.37E-02
117	GO:0034220: ion transmembrane transport	1.37E-02
118	GO:0010051: xylem and phloem pattern formation	1.37E-02
119	GO:0006633: fatty acid biosynthetic process	1.45E-02
120	GO:0009741: response to brassinosteroid	1.45E-02
121	GO:0015986: ATP synthesis coupled proton transport	1.52E-02
122	GO:0007059: chromosome segregation	1.52E-02
123	GO:0009791: post-embryonic development	1.60E-02
124	GO:0019252: starch biosynthetic process	1.60E-02
125	GO:0008654: phospholipid biosynthetic process	1.60E-02
126	GO:0071554: cell wall organization or biogenesis	1.68E-02
127	GO:0007264: small GTPase mediated signal transduction	1.76E-02
128	GO:0010583: response to cyclopentenone	1.76E-02
129	GO:0019761: glucosinolate biosynthetic process	1.76E-02
130	GO:0048235: pollen sperm cell differentiation	1.76E-02
131	GO:0010090: trichome morphogenesis	1.84E-02
132	GO:1901657: glycosyl compound metabolic process	1.84E-02
133	GO:0010468: regulation of gene expression	1.90E-02
134	GO:0009738: abscisic acid-activated signaling pathway	1.98E-02
135	GO:0009416: response to light stimulus	2.06E-02
136	GO:0051607: defense response to virus	2.10E-02
137	GO:0016126: sterol biosynthetic process	2.18E-02
138	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.27E-02
139	GO:0010029: regulation of seed germination	2.27E-02
140	GO:0009409: response to cold	2.27E-02
141	GO:0042128: nitrate assimilation	2.36E-02
142	GO:0048573: photoperiodism, flowering	2.45E-02
143	GO:0009817: defense response to fungus, incompatible interaction	2.64E-02
144	GO:0030244: cellulose biosynthetic process	2.64E-02
145	GO:0018298: protein-chromophore linkage	2.64E-02
146	GO:0009813: flavonoid biosynthetic process	2.73E-02
147	GO:0009832: plant-type cell wall biogenesis	2.73E-02
148	GO:0010311: lateral root formation	2.73E-02
149	GO:0007049: cell cycle	2.75E-02
150	GO:0009407: toxin catabolic process	2.83E-02
151	GO:0010218: response to far red light	2.83E-02
152	GO:0010119: regulation of stomatal movement	2.93E-02
153	GO:0007568: aging	2.93E-02
154	GO:0009867: jasmonic acid mediated signaling pathway	3.12E-02
155	GO:0006839: mitochondrial transport	3.43E-02
156	GO:0010114: response to red light	3.74E-02
157	GO:0009926: auxin polar transport	3.74E-02
158	GO:0009744: response to sucrose	3.74E-02
159	GO:0009636: response to toxic substance	4.06E-02
160	GO:0032259: methylation	4.30E-02
161	GO:0009809: lignin biosynthetic process	4.62E-02
162	GO:0006364: rRNA processing	4.62E-02
163	GO:0010224: response to UV-B	4.74E-02
164	GO:0009414: response to water deprivation	4.79E-02
165	GO:0009753: response to jasmonic acid	4.81E-02
166	GO:0042742: defense response to bacterium	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
7	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
8	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
9	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
10	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
11	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
12	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.21E-05
13	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.71E-04
14	GO:0010313: phytochrome binding	1.71E-04
15	GO:0090448: glucosinolate:proton symporter activity	1.71E-04
16	GO:0030797: 24-methylenesterol C-methyltransferase activity	1.71E-04
17	GO:0004575: sucrose alpha-glucosidase activity	2.37E-04
18	GO:0004047: aminomethyltransferase activity	3.87E-04
19	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	3.87E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.87E-04
21	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	3.87E-04
22	GO:0000064: L-ornithine transmembrane transporter activity	3.87E-04
23	GO:0004512: inositol-3-phosphate synthase activity	3.87E-04
24	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	3.87E-04
25	GO:0048531: beta-1,3-galactosyltransferase activity	3.87E-04
26	GO:0004618: phosphoglycerate kinase activity	3.87E-04
27	GO:0010297: heteropolysaccharide binding	3.87E-04
28	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.97E-04
29	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.97E-04
30	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.97E-04
31	GO:0004148: dihydrolipoyl dehydrogenase activity	6.32E-04
32	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	6.32E-04
33	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	6.32E-04
34	GO:0005457: GDP-fucose transmembrane transporter activity	6.32E-04
35	GO:0048027: mRNA 5'-UTR binding	9.04E-04
36	GO:0003999: adenine phosphoribosyltransferase activity	9.04E-04
37	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	9.04E-04
38	GO:0005460: UDP-glucose transmembrane transporter activity	9.04E-04
39	GO:0019905: syntaxin binding	1.20E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.20E-03
41	GO:0008453: alanine-glyoxylate transaminase activity	1.20E-03
42	GO:0004301: epoxide hydrolase activity	1.20E-03
43	GO:0016757: transferase activity, transferring glycosyl groups	1.26E-03
44	GO:0052689: carboxylic ester hydrolase activity	1.33E-03
45	GO:0005459: UDP-galactose transmembrane transporter activity	1.52E-03
46	GO:0017137: Rab GTPase binding	1.52E-03
47	GO:0004356: glutamate-ammonia ligase activity	1.52E-03
48	GO:0000210: NAD+ diphosphatase activity	1.87E-03
49	GO:0102229: amylopectin maltohydrolase activity	1.87E-03
50	GO:0042578: phosphoric ester hydrolase activity	1.87E-03
51	GO:0008519: ammonium transmembrane transporter activity	1.87E-03
52	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.24E-03
53	GO:0051753: mannan synthase activity	2.24E-03
54	GO:0016161: beta-amylase activity	2.24E-03
55	GO:0016621: cinnamoyl-CoA reductase activity	2.64E-03
56	GO:0043295: glutathione binding	2.64E-03
57	GO:0004564: beta-fructofuranosidase activity	3.06E-03
58	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.95E-03
59	GO:0004860: protein kinase inhibitor activity	5.45E-03
60	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.45E-03
61	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.45E-03
62	GO:0004565: beta-galactosidase activity	6.54E-03
63	GO:0004089: carbonate dehydratase activity	6.54E-03
64	GO:0031072: heat shock protein binding	6.54E-03
65	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.11E-03
66	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.55E-03
67	GO:0031409: pigment binding	8.30E-03
68	GO:0022857: transmembrane transporter activity	8.63E-03
69	GO:0001046: core promoter sequence-specific DNA binding	8.92E-03
70	GO:0051087: chaperone binding	9.56E-03
71	GO:0004707: MAP kinase activity	1.02E-02
72	GO:0004176: ATP-dependent peptidase activity	1.02E-02
73	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.09E-02
74	GO:0016758: transferase activity, transferring hexosyl groups	1.12E-02
75	GO:0016760: cellulose synthase (UDP-forming) activity	1.16E-02
76	GO:0003756: protein disulfide isomerase activity	1.23E-02
77	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.23E-02
78	GO:0008080: N-acetyltransferase activity	1.45E-02
79	GO:0015297: antiporter activity	1.52E-02
80	GO:0050662: coenzyme binding	1.52E-02
81	GO:0004872: receptor activity	1.60E-02
82	GO:0019901: protein kinase binding	1.60E-02
83	GO:0048038: quinone binding	1.68E-02
84	GO:0005215: transporter activity	1.68E-02
85	GO:0004518: nuclease activity	1.76E-02
86	GO:0008194: UDP-glycosyltransferase activity	1.78E-02
87	GO:0051015: actin filament binding	1.84E-02
88	GO:0016759: cellulose synthase activity	1.93E-02
89	GO:0008483: transaminase activity	2.01E-02
90	GO:0008237: metallopeptidase activity	2.01E-02
91	GO:0016413: O-acetyltransferase activity	2.10E-02
92	GO:0015250: water channel activity	2.18E-02
93	GO:0016168: chlorophyll binding	2.27E-02
94	GO:0102483: scopolin beta-glucosidase activity	2.45E-02
95	GO:0030247: polysaccharide binding	2.45E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	2.51E-02
97	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.55E-02
98	GO:0016740: transferase activity	2.64E-02
99	GO:0005096: GTPase activator activity	2.73E-02
100	GO:0004222: metalloendopeptidase activity	2.83E-02
101	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.83E-02
102	GO:0050660: flavin adenine dinucleotide binding	2.85E-02
103	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.93E-02
104	GO:0050897: cobalt ion binding	2.93E-02
105	GO:0030246: carbohydrate binding	2.99E-02
106	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.12E-02
107	GO:0008422: beta-glucosidase activity	3.33E-02
108	GO:0050661: NADP binding	3.43E-02
109	GO:0004364: glutathione transferase activity	3.64E-02
110	GO:0004871: signal transducer activity	3.82E-02
111	GO:0051537: 2 iron, 2 sulfur cluster binding	3.96E-02
112	GO:0016787: hydrolase activity	4.42E-02
113	GO:0016298: lipase activity	4.74E-02
114	GO:0045330: aspartyl esterase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0005775: vacuolar lumen	1.21E-05
3	GO:0005960: glycine cleavage complex	1.21E-05
4	GO:0009507: chloroplast	4.03E-05
5	GO:0005794: Golgi apparatus	1.30E-04
6	GO:0009344: nitrite reductase complex [NAD(P)H]	1.71E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.98E-04
8	GO:0009941: chloroplast envelope	3.02E-04
9	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.87E-04
10	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	3.87E-04
11	GO:0009505: plant-type cell wall	4.34E-04
12	GO:0048046: apoplast	4.78E-04
13	GO:0009509: chromoplast	6.32E-04
14	GO:0009570: chloroplast stroma	7.91E-04
15	GO:0016020: membrane	8.20E-04
16	GO:0009579: thylakoid	1.56E-03
17	GO:0009535: chloroplast thylakoid membrane	1.56E-03
18	GO:0009534: chloroplast thylakoid	1.59E-03
19	GO:0000139: Golgi membrane	1.89E-03
20	GO:0000325: plant-type vacuole	3.39E-03
21	GO:0005779: integral component of peroxisomal membrane	3.50E-03
22	GO:0031902: late endosome membrane	4.41E-03
23	GO:0016324: apical plasma membrane	4.93E-03
24	GO:0009506: plasmodesma	5.41E-03
25	GO:0005765: lysosomal membrane	5.45E-03
26	GO:0048471: perinuclear region of cytoplasm	5.45E-03
27	GO:0019013: viral nucleocapsid	6.54E-03
28	GO:0009508: plastid chromosome	6.54E-03
29	GO:0030095: chloroplast photosystem II	7.11E-03
30	GO:0005753: mitochondrial proton-transporting ATP synthase complex	7.69E-03
31	GO:0030076: light-harvesting complex	7.69E-03
32	GO:0009654: photosystem II oxygen evolving complex	9.56E-03
33	GO:0005773: vacuole	1.01E-02
34	GO:0010287: plastoglobule	1.09E-02
35	GO:0009543: chloroplast thylakoid lumen	1.15E-02
36	GO:0005623: cell	1.18E-02
37	GO:0009522: photosystem I	1.52E-02
38	GO:0009523: photosystem II	1.60E-02
39	GO:0019898: extrinsic component of membrane	1.60E-02
40	GO:0010319: stromule	2.01E-02
41	GO:0009295: nucleoid	2.01E-02
42	GO:0005778: peroxisomal membrane	2.01E-02
43	GO:0046658: anchored component of plasma membrane	2.11E-02
44	GO:0016021: integral component of membrane	2.34E-02
45	GO:0005576: extracellular region	2.35E-02
46	GO:0005777: peroxisome	2.45E-02
47	GO:0009707: chloroplast outer membrane	2.64E-02
48	GO:0005819: spindle	3.33E-02
49	GO:0031225: anchored component of membrane	3.59E-02
50	GO:0005743: mitochondrial inner membrane	4.18E-02
51	GO:0005783: endoplasmic reticulum	4.41E-02