GO Enrichment Analysis of Co-expressed Genes with
AT3G52880
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098755: maintenance of seed dormancy by absisic acid | 0.00E+00 |
| 2 | GO:0046109: uridine biosynthetic process | 0.00E+00 |
| 3 | GO:0045185: maintenance of protein location | 0.00E+00 |
| 4 | GO:0046686: response to cadmium ion | 6.87E-09 |
| 5 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.48E-08 |
| 6 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.19E-06 |
| 7 | GO:0006102: isocitrate metabolic process | 2.62E-05 |
| 8 | GO:0071586: CAAX-box protein processing | 6.10E-05 |
| 9 | GO:0007292: female gamete generation | 6.10E-05 |
| 10 | GO:1990641: response to iron ion starvation | 6.10E-05 |
| 11 | GO:0019567: arabinose biosynthetic process | 6.10E-05 |
| 12 | GO:0006422: aspartyl-tRNA aminoacylation | 6.10E-05 |
| 13 | GO:0080173: male-female gamete recognition during double fertilization | 6.10E-05 |
| 14 | GO:0080120: CAAX-box protein maturation | 6.10E-05 |
| 15 | GO:0035266: meristem growth | 6.10E-05 |
| 16 | GO:0019521: D-gluconate metabolic process | 1.48E-04 |
| 17 | GO:0051788: response to misfolded protein | 1.48E-04 |
| 18 | GO:0006101: citrate metabolic process | 1.48E-04 |
| 19 | GO:0042325: regulation of phosphorylation | 1.48E-04 |
| 20 | GO:0031648: protein destabilization | 1.48E-04 |
| 21 | GO:0006096: glycolytic process | 1.75E-04 |
| 22 | GO:0060968: regulation of gene silencing | 2.51E-04 |
| 23 | GO:0010359: regulation of anion channel activity | 2.51E-04 |
| 24 | GO:0080055: low-affinity nitrate transport | 2.51E-04 |
| 25 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.65E-04 |
| 26 | GO:0001676: long-chain fatty acid metabolic process | 3.65E-04 |
| 27 | GO:0010116: positive regulation of abscisic acid biosynthetic process | 3.65E-04 |
| 28 | GO:0000302: response to reactive oxygen species | 4.14E-04 |
| 29 | GO:0045227: capsule polysaccharide biosynthetic process | 4.88E-04 |
| 30 | GO:0033358: UDP-L-arabinose biosynthetic process | 4.88E-04 |
| 31 | GO:0006542: glutamine biosynthetic process | 4.88E-04 |
| 32 | GO:0006097: glyoxylate cycle | 6.19E-04 |
| 33 | GO:0042128: nitrate assimilation | 6.59E-04 |
| 34 | GO:0048232: male gamete generation | 7.57E-04 |
| 35 | GO:0043248: proteasome assembly | 7.57E-04 |
| 36 | GO:1902456: regulation of stomatal opening | 7.57E-04 |
| 37 | GO:0006014: D-ribose metabolic process | 7.57E-04 |
| 38 | GO:0048827: phyllome development | 7.57E-04 |
| 39 | GO:0006099: tricarboxylic acid cycle | 9.99E-04 |
| 40 | GO:1902074: response to salt | 1.05E-03 |
| 41 | GO:0050790: regulation of catalytic activity | 1.05E-03 |
| 42 | GO:0009819: drought recovery | 1.21E-03 |
| 43 | GO:0010078: maintenance of root meristem identity | 1.21E-03 |
| 44 | GO:0009699: phenylpropanoid biosynthetic process | 1.38E-03 |
| 45 | GO:0006002: fructose 6-phosphate metabolic process | 1.38E-03 |
| 46 | GO:0006098: pentose-phosphate shunt | 1.55E-03 |
| 47 | GO:0006896: Golgi to vacuole transport | 1.92E-03 |
| 48 | GO:0048829: root cap development | 1.92E-03 |
| 49 | GO:0010015: root morphogenesis | 2.12E-03 |
| 50 | GO:0006790: sulfur compound metabolic process | 2.32E-03 |
| 51 | GO:0015706: nitrate transport | 2.32E-03 |
| 52 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 2.32E-03 |
| 53 | GO:0009933: meristem structural organization | 2.74E-03 |
| 54 | GO:0007034: vacuolar transport | 2.74E-03 |
| 55 | GO:0009225: nucleotide-sugar metabolic process | 2.96E-03 |
| 56 | GO:0090351: seedling development | 2.96E-03 |
| 57 | GO:0046854: phosphatidylinositol phosphorylation | 2.96E-03 |
| 58 | GO:0000162: tryptophan biosynthetic process | 3.18E-03 |
| 59 | GO:2000377: regulation of reactive oxygen species metabolic process | 3.42E-03 |
| 60 | GO:0031408: oxylipin biosynthetic process | 3.89E-03 |
| 61 | GO:0010150: leaf senescence | 3.93E-03 |
| 62 | GO:0031348: negative regulation of defense response | 4.15E-03 |
| 63 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.39E-03 |
| 64 | GO:0006012: galactose metabolic process | 4.40E-03 |
| 65 | GO:0051028: mRNA transport | 4.92E-03 |
| 66 | GO:0006511: ubiquitin-dependent protein catabolic process | 5.13E-03 |
| 67 | GO:0006623: protein targeting to vacuole | 6.03E-03 |
| 68 | GO:0019252: starch biosynthetic process | 6.03E-03 |
| 69 | GO:0080167: response to karrikin | 7.51E-03 |
| 70 | GO:0010029: regulation of seed germination | 8.48E-03 |
| 71 | GO:0006508: proteolysis | 9.35E-03 |
| 72 | GO:0016311: dephosphorylation | 9.47E-03 |
| 73 | GO:0030244: cellulose biosynthetic process | 9.82E-03 |
| 74 | GO:0010311: lateral root formation | 1.02E-02 |
| 75 | GO:0009832: plant-type cell wall biogenesis | 1.02E-02 |
| 76 | GO:0006499: N-terminal protein myristoylation | 1.05E-02 |
| 77 | GO:0009407: toxin catabolic process | 1.05E-02 |
| 78 | GO:0010119: regulation of stomatal movement | 1.09E-02 |
| 79 | GO:0010043: response to zinc ion | 1.09E-02 |
| 80 | GO:0009408: response to heat | 1.11E-02 |
| 81 | GO:0015031: protein transport | 1.16E-02 |
| 82 | GO:0045087: innate immune response | 1.16E-02 |
| 83 | GO:0016051: carbohydrate biosynthetic process | 1.16E-02 |
| 84 | GO:0006631: fatty acid metabolic process | 1.31E-02 |
| 85 | GO:0051707: response to other organism | 1.39E-02 |
| 86 | GO:0009965: leaf morphogenesis | 1.51E-02 |
| 87 | GO:0009846: pollen germination | 1.63E-02 |
| 88 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.76E-02 |
| 89 | GO:0006857: oligopeptide transport | 1.80E-02 |
| 90 | GO:0009738: abscisic acid-activated signaling pathway | 1.91E-02 |
| 91 | GO:0048367: shoot system development | 1.97E-02 |
| 92 | GO:0055114: oxidation-reduction process | 1.99E-02 |
| 93 | GO:0009737: response to abscisic acid | 2.22E-02 |
| 94 | GO:0018105: peptidyl-serine phosphorylation | 2.25E-02 |
| 95 | GO:0006396: RNA processing | 2.25E-02 |
| 96 | GO:0045893: positive regulation of transcription, DNA-templated | 2.27E-02 |
| 97 | GO:0006457: protein folding | 2.56E-02 |
| 98 | GO:0009058: biosynthetic process | 2.68E-02 |
| 99 | GO:0009845: seed germination | 2.73E-02 |
| 100 | GO:0006633: fatty acid biosynthetic process | 3.04E-02 |
| 101 | GO:0007166: cell surface receptor signaling pathway | 3.57E-02 |
| 102 | GO:0006979: response to oxidative stress | 4.03E-02 |
| 103 | GO:0006970: response to osmotic stress | 4.67E-02 |
| 104 | GO:0009860: pollen tube growth | 4.67E-02 |
| 105 | GO:0007049: cell cycle | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050269: coniferyl-aldehyde dehydrogenase activity | 0.00E+00 |
| 2 | GO:0009940: amino-terminal vacuolar sorting propeptide binding | 0.00E+00 |
| 3 | GO:0016312: inositol bisphosphate phosphatase activity | 0.00E+00 |
| 4 | GO:0036402: proteasome-activating ATPase activity | 3.48E-08 |
| 5 | GO:0017025: TBP-class protein binding | 2.12E-06 |
| 6 | GO:0005496: steroid binding | 6.50E-06 |
| 7 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 1.00E-05 |
| 8 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 5.14E-05 |
| 9 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 6.10E-05 |
| 10 | GO:0004815: aspartate-tRNA ligase activity | 6.10E-05 |
| 11 | GO:0008802: betaine-aldehyde dehydrogenase activity | 6.10E-05 |
| 12 | GO:0010209: vacuolar sorting signal binding | 6.10E-05 |
| 13 | GO:0003994: aconitate hydratase activity | 1.48E-04 |
| 14 | GO:0015036: disulfide oxidoreductase activity | 1.48E-04 |
| 15 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 1.48E-04 |
| 16 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 2.51E-04 |
| 17 | GO:0004751: ribose-5-phosphate isomerase activity | 2.51E-04 |
| 18 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 2.51E-04 |
| 19 | GO:0016805: dipeptidase activity | 2.51E-04 |
| 20 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 2.51E-04 |
| 21 | GO:0005524: ATP binding | 4.42E-04 |
| 22 | GO:0016887: ATPase activity | 4.82E-04 |
| 23 | GO:0050373: UDP-arabinose 4-epimerase activity | 4.88E-04 |
| 24 | GO:0051213: dioxygenase activity | 5.92E-04 |
| 25 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 6.19E-04 |
| 26 | GO:0004356: glutamate-ammonia ligase activity | 6.19E-04 |
| 27 | GO:0004526: ribonuclease P activity | 7.57E-04 |
| 28 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 9.01E-04 |
| 29 | GO:0004747: ribokinase activity | 9.01E-04 |
| 30 | GO:0003978: UDP-glucose 4-epimerase activity | 9.01E-04 |
| 31 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 9.01E-04 |
| 32 | GO:0004602: glutathione peroxidase activity | 9.01E-04 |
| 33 | GO:0005507: copper ion binding | 1.01E-03 |
| 34 | GO:0008235: metalloexopeptidase activity | 1.05E-03 |
| 35 | GO:0003872: 6-phosphofructokinase activity | 1.05E-03 |
| 36 | GO:0008320: protein transmembrane transporter activity | 1.05E-03 |
| 37 | GO:0043295: glutathione binding | 1.05E-03 |
| 38 | GO:0008865: fructokinase activity | 1.21E-03 |
| 39 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.21E-03 |
| 40 | GO:0005509: calcium ion binding | 1.51E-03 |
| 41 | GO:0004743: pyruvate kinase activity | 1.73E-03 |
| 42 | GO:0030955: potassium ion binding | 1.73E-03 |
| 43 | GO:0004177: aminopeptidase activity | 2.12E-03 |
| 44 | GO:0019888: protein phosphatase regulator activity | 2.52E-03 |
| 45 | GO:0004175: endopeptidase activity | 2.74E-03 |
| 46 | GO:0000287: magnesium ion binding | 5.95E-03 |
| 47 | GO:0004197: cysteine-type endopeptidase activity | 6.61E-03 |
| 48 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 8.81E-03 |
| 49 | GO:0030247: polysaccharide binding | 9.14E-03 |
| 50 | GO:0004004: ATP-dependent RNA helicase activity | 9.14E-03 |
| 51 | GO:0004683: calmodulin-dependent protein kinase activity | 9.14E-03 |
| 52 | GO:0004222: metalloendopeptidase activity | 1.05E-02 |
| 53 | GO:0030145: manganese ion binding | 1.09E-02 |
| 54 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.16E-02 |
| 55 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.27E-02 |
| 56 | GO:0004364: glutathione transferase activity | 1.35E-02 |
| 57 | GO:0015293: symporter activity | 1.51E-02 |
| 58 | GO:0051287: NAD binding | 1.59E-02 |
| 59 | GO:0008234: cysteine-type peptidase activity | 1.84E-02 |
| 60 | GO:0004674: protein serine/threonine kinase activity | 1.90E-02 |
| 61 | GO:0045735: nutrient reservoir activity | 1.93E-02 |
| 62 | GO:0008026: ATP-dependent helicase activity | 2.29E-02 |
| 63 | GO:0004386: helicase activity | 2.34E-02 |
| 64 | GO:0004252: serine-type endopeptidase activity | 2.78E-02 |
| 65 | GO:0046872: metal ion binding | 2.86E-02 |
| 66 | GO:0042802: identical protein binding | 3.85E-02 |
| 67 | GO:0016301: kinase activity | 4.35E-02 |
| 68 | GO:0003824: catalytic activity | 4.38E-02 |
| 69 | GO:0004601: peroxidase activity | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019822: P4 peroxisome | 0.00E+00 |
| 2 | GO:0005829: cytosol | 1.22E-12 |
| 3 | GO:0031597: cytosolic proteasome complex | 6.20E-08 |
| 4 | GO:0031595: nuclear proteasome complex | 1.02E-07 |
| 5 | GO:0008540: proteasome regulatory particle, base subcomplex | 4.68E-07 |
| 6 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 6.10E-05 |
| 7 | GO:0000502: proteasome complex | 1.38E-04 |
| 8 | GO:0031314: extrinsic component of mitochondrial inner membrane | 1.48E-04 |
| 9 | GO:0030134: ER to Golgi transport vesicle | 1.48E-04 |
| 10 | GO:0005782: peroxisomal matrix | 2.51E-04 |
| 11 | GO:0005886: plasma membrane | 2.78E-04 |
| 12 | GO:0005737: cytoplasm | 4.14E-04 |
| 13 | GO:0032580: Golgi cisterna membrane | 4.99E-04 |
| 14 | GO:0005945: 6-phosphofructokinase complex | 6.19E-04 |
| 15 | GO:0005777: peroxisome | 7.30E-04 |
| 16 | GO:0016272: prefoldin complex | 9.01E-04 |
| 17 | GO:0031902: late endosome membrane | 1.13E-03 |
| 18 | GO:0030665: clathrin-coated vesicle membrane | 1.73E-03 |
| 19 | GO:0005635: nuclear envelope | 1.74E-03 |
| 20 | GO:0017119: Golgi transport complex | 1.92E-03 |
| 21 | GO:0005764: lysosome | 2.74E-03 |
| 22 | GO:0005783: endoplasmic reticulum | 2.90E-03 |
| 23 | GO:0030176: integral component of endoplasmic reticulum membrane | 2.96E-03 |
| 24 | GO:0005770: late endosome | 5.46E-03 |
| 25 | GO:0005643: nuclear pore | 9.82E-03 |
| 26 | GO:0005819: spindle | 1.23E-02 |
| 27 | GO:0005789: endoplasmic reticulum membrane | 1.46E-02 |
| 28 | GO:0005794: Golgi apparatus | 1.81E-02 |
| 29 | GO:0022626: cytosolic ribosome | 1.89E-02 |
| 30 | GO:0005834: heterotrimeric G-protein complex | 2.02E-02 |
| 31 | GO:0005773: vacuole | 2.13E-02 |
| 32 | GO:0009543: chloroplast thylakoid lumen | 2.58E-02 |
| 33 | GO:0005623: cell | 2.63E-02 |
| 34 | GO:0009524: phragmoplast | 2.68E-02 |
| 35 | GO:0016020: membrane | 2.69E-02 |
| 36 | GO:0009570: chloroplast stroma | 2.91E-02 |
| 37 | GO:0005615: extracellular space | 3.52E-02 |