GO Enrichment Analysis of Co-expressed Genes with
AT3G52870
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 2 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 3 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 4 | GO:0051881: regulation of mitochondrial membrane potential | 0.00E+00 |
| 5 | GO:0009249: protein lipoylation | 0.00E+00 |
| 6 | GO:0042026: protein refolding | 2.36E-05 |
| 7 | GO:0009767: photosynthetic electron transport chain | 1.54E-04 |
| 8 | GO:0009658: chloroplast organization | 1.71E-04 |
| 9 | GO:0019253: reductive pentose-phosphate cycle | 1.75E-04 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.97E-04 |
| 11 | GO:0080183: response to photooxidative stress | 1.97E-04 |
| 12 | GO:2000123: positive regulation of stomatal complex development | 1.97E-04 |
| 13 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.97E-04 |
| 14 | GO:0006810: transport | 2.92E-04 |
| 15 | GO:2000082: regulation of L-ascorbic acid biosynthetic process | 3.29E-04 |
| 16 | GO:0070828: heterochromatin organization | 3.29E-04 |
| 17 | GO:0016117: carotenoid biosynthetic process | 4.26E-04 |
| 18 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.75E-04 |
| 19 | GO:0010239: chloroplast mRNA processing | 4.75E-04 |
| 20 | GO:0046902: regulation of mitochondrial membrane permeability | 4.75E-04 |
| 21 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.75E-04 |
| 22 | GO:2001141: regulation of RNA biosynthetic process | 4.75E-04 |
| 23 | GO:0006342: chromatin silencing | 4.96E-04 |
| 24 | GO:0019464: glycine decarboxylation via glycine cleavage system | 6.32E-04 |
| 25 | GO:2000038: regulation of stomatal complex development | 6.32E-04 |
| 26 | GO:0006546: glycine catabolic process | 6.32E-04 |
| 27 | GO:0010375: stomatal complex patterning | 8.00E-04 |
| 28 | GO:0010236: plastoquinone biosynthetic process | 8.00E-04 |
| 29 | GO:0009107: lipoate biosynthetic process | 8.00E-04 |
| 30 | GO:0016123: xanthophyll biosynthetic process | 8.00E-04 |
| 31 | GO:0006555: methionine metabolic process | 9.77E-04 |
| 32 | GO:0010358: leaf shaping | 9.77E-04 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 9.77E-04 |
| 34 | GO:0006014: D-ribose metabolic process | 9.77E-04 |
| 35 | GO:0006458: 'de novo' protein folding | 1.16E-03 |
| 36 | GO:0048564: photosystem I assembly | 1.57E-03 |
| 37 | GO:0008610: lipid biosynthetic process | 1.57E-03 |
| 38 | GO:0071482: cellular response to light stimulus | 1.79E-03 |
| 39 | GO:0048193: Golgi vesicle transport | 1.79E-03 |
| 40 | GO:0035999: tetrahydrofolate interconversion | 2.26E-03 |
| 41 | GO:0009773: photosynthetic electron transport in photosystem I | 2.77E-03 |
| 42 | GO:0019684: photosynthesis, light reaction | 2.77E-03 |
| 43 | GO:0006352: DNA-templated transcription, initiation | 2.77E-03 |
| 44 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.77E-03 |
| 45 | GO:0045037: protein import into chloroplast stroma | 3.03E-03 |
| 46 | GO:0002237: response to molecule of bacterial origin | 3.59E-03 |
| 47 | GO:0010020: chloroplast fission | 3.59E-03 |
| 48 | GO:0007017: microtubule-based process | 4.80E-03 |
| 49 | GO:0009409: response to cold | 4.99E-03 |
| 50 | GO:0061077: chaperone-mediated protein folding | 5.12E-03 |
| 51 | GO:0009735: response to cytokinin | 5.17E-03 |
| 52 | GO:0006730: one-carbon metabolic process | 5.45E-03 |
| 53 | GO:0009814: defense response, incompatible interaction | 5.45E-03 |
| 54 | GO:0007005: mitochondrion organization | 5.45E-03 |
| 55 | GO:0080092: regulation of pollen tube growth | 5.45E-03 |
| 56 | GO:0006284: base-excision repair | 6.13E-03 |
| 57 | GO:0010268: brassinosteroid homeostasis | 7.20E-03 |
| 58 | GO:0009741: response to brassinosteroid | 7.20E-03 |
| 59 | GO:0019252: starch biosynthetic process | 7.95E-03 |
| 60 | GO:0016132: brassinosteroid biosynthetic process | 8.33E-03 |
| 61 | GO:0016125: sterol metabolic process | 9.53E-03 |
| 62 | GO:0010286: heat acclimation | 9.94E-03 |
| 63 | GO:0007267: cell-cell signaling | 9.94E-03 |
| 64 | GO:0048366: leaf development | 1.07E-02 |
| 65 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.16E-02 |
| 66 | GO:0009627: systemic acquired resistance | 1.17E-02 |
| 67 | GO:0008219: cell death | 1.30E-02 |
| 68 | GO:0009853: photorespiration | 1.54E-02 |
| 69 | GO:0009867: jasmonic acid mediated signaling pathway | 1.54E-02 |
| 70 | GO:0016051: carbohydrate biosynthetic process | 1.54E-02 |
| 71 | GO:0034599: cellular response to oxidative stress | 1.59E-02 |
| 72 | GO:0006839: mitochondrial transport | 1.69E-02 |
| 73 | GO:0042542: response to hydrogen peroxide | 1.79E-02 |
| 74 | GO:0009744: response to sucrose | 1.84E-02 |
| 75 | GO:0000165: MAPK cascade | 2.11E-02 |
| 76 | GO:0042538: hyperosmotic salinity response | 2.16E-02 |
| 77 | GO:0046686: response to cadmium ion | 2.48E-02 |
| 78 | GO:0006096: glycolytic process | 2.56E-02 |
| 79 | GO:0048316: seed development | 2.62E-02 |
| 80 | GO:0048367: shoot system development | 2.62E-02 |
| 81 | GO:0006457: protein folding | 3.82E-02 |
| 82 | GO:0009790: embryo development | 3.83E-02 |
| 83 | GO:0006633: fatty acid biosynthetic process | 4.04E-02 |
| 84 | GO:0006413: translational initiation | 4.11E-02 |
| 85 | GO:0007623: circadian rhythm | 4.32E-02 |
| 86 | GO:0009451: RNA modification | 4.39E-02 |
| 87 | GO:0006470: protein dephosphorylation | 4.75E-02 |
| 88 | GO:0008380: RNA splicing | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 2 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 3 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 4 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.36E-05 |
| 5 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 8.25E-05 |
| 6 | GO:0010012: steroid 22-alpha hydroxylase activity | 8.25E-05 |
| 7 | GO:0044183: protein binding involved in protein folding | 1.14E-04 |
| 8 | GO:0004047: aminomethyltransferase activity | 1.97E-04 |
| 9 | GO:0010291: carotene beta-ring hydroxylase activity | 1.97E-04 |
| 10 | GO:0017118: lipoyltransferase activity | 1.97E-04 |
| 11 | GO:0004618: phosphoglycerate kinase activity | 1.97E-04 |
| 12 | GO:0016415: octanoyltransferase activity | 1.97E-04 |
| 13 | GO:0005528: FK506 binding | 2.48E-04 |
| 14 | GO:0004751: ribose-5-phosphate isomerase activity | 3.29E-04 |
| 15 | GO:0051082: unfolded protein binding | 3.84E-04 |
| 16 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 4.75E-04 |
| 17 | GO:0016987: sigma factor activity | 6.32E-04 |
| 18 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 6.32E-04 |
| 19 | GO:0001053: plastid sigma factor activity | 6.32E-04 |
| 20 | GO:0008374: O-acyltransferase activity | 8.00E-04 |
| 21 | GO:0005471: ATP:ADP antiporter activity | 8.00E-04 |
| 22 | GO:0008725: DNA-3-methyladenine glycosylase activity | 8.00E-04 |
| 23 | GO:0080030: methyl indole-3-acetate esterase activity | 9.77E-04 |
| 24 | GO:0004747: ribokinase activity | 1.16E-03 |
| 25 | GO:0008865: fructokinase activity | 1.57E-03 |
| 26 | GO:0004708: MAP kinase kinase activity | 1.57E-03 |
| 27 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.57E-03 |
| 28 | GO:0005198: structural molecule activity | 2.01E-03 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.09E-03 |
| 30 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.77E-03 |
| 31 | GO:0005509: calcium ion binding | 2.79E-03 |
| 32 | GO:0022857: transmembrane transporter activity | 3.20E-03 |
| 33 | GO:0031072: heat shock protein binding | 3.31E-03 |
| 34 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.36E-03 |
| 35 | GO:0003756: protein disulfide isomerase activity | 6.13E-03 |
| 36 | GO:0019901: protein kinase binding | 7.95E-03 |
| 37 | GO:0046982: protein heterodimerization activity | 8.88E-03 |
| 38 | GO:0008483: transaminase activity | 9.94E-03 |
| 39 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 9.94E-03 |
| 40 | GO:0005200: structural constituent of cytoskeleton | 9.94E-03 |
| 41 | GO:0016597: amino acid binding | 1.04E-02 |
| 42 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.54E-02 |
| 43 | GO:0003924: GTPase activity | 1.66E-02 |
| 44 | GO:0009055: electron carrier activity | 1.78E-02 |
| 45 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.95E-02 |
| 46 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.28E-02 |
| 47 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.62E-02 |
| 48 | GO:0003779: actin binding | 2.86E-02 |
| 49 | GO:0016740: transferase activity | 3.60E-02 |
| 50 | GO:0008565: protein transporter activity | 3.90E-02 |
| 51 | GO:0019825: oxygen binding | 4.19E-02 |
| 52 | GO:0003743: translation initiation factor activity | 4.82E-02 |
| 53 | GO:0005525: GTP binding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.78E-16 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.11E-10 |
| 4 | GO:0009941: chloroplast envelope | 8.15E-10 |
| 5 | GO:0009570: chloroplast stroma | 6.59E-09 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 6.19E-08 |
| 7 | GO:0030095: chloroplast photosystem II | 3.46E-06 |
| 8 | GO:0009654: photosystem II oxygen evolving complex | 7.42E-06 |
| 9 | GO:0019898: extrinsic component of membrane | 2.58E-05 |
| 10 | GO:0009579: thylakoid | 3.32E-05 |
| 11 | GO:0009534: chloroplast thylakoid | 3.41E-05 |
| 12 | GO:0010319: stromule | 4.31E-05 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.66E-05 |
| 14 | GO:0000792: heterochromatin | 1.97E-04 |
| 15 | GO:0000790: nuclear chromatin | 4.26E-04 |
| 16 | GO:0005960: glycine cleavage complex | 4.75E-04 |
| 17 | GO:0000786: nucleosome | 1.34E-03 |
| 18 | GO:0031977: thylakoid lumen | 1.66E-03 |
| 19 | GO:0045298: tubulin complex | 2.02E-03 |
| 20 | GO:0016324: apical plasma membrane | 2.51E-03 |
| 21 | GO:0009508: plastid chromosome | 3.31E-03 |
| 22 | GO:0005875: microtubule associated complex | 4.18E-03 |
| 23 | GO:0042651: thylakoid membrane | 4.80E-03 |
| 24 | GO:0009532: plastid stroma | 5.12E-03 |
| 25 | GO:0009295: nucleoid | 9.94E-03 |
| 26 | GO:0005874: microtubule | 1.09E-02 |
| 27 | GO:0031969: chloroplast membrane | 1.12E-02 |
| 28 | GO:0005743: mitochondrial inner membrane | 1.55E-02 |
| 29 | GO:0005856: cytoskeleton | 2.00E-02 |
| 30 | GO:0048046: apoplast | 2.21E-02 |
| 31 | GO:0022626: cytosolic ribosome | 2.83E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 2.93E-02 |
| 33 | GO:0005623: cell | 3.50E-02 |
| 34 | GO:0031225: anchored component of membrane | 4.59E-02 |