co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0080170: hydrogen peroxide transmembrane transport	2.38E-06
3	GO:0009416: response to light stimulus	9.68E-06
4	GO:0015995: chlorophyll biosynthetic process	4.41E-05
5	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	6.74E-05
6	GO:0010588: cotyledon vascular tissue pattern formation	1.15E-04
7	GO:0010115: regulation of abscisic acid biosynthetic process	1.62E-04
8	GO:0001736: establishment of planar polarity	1.62E-04
9	GO:0015714: phosphoenolpyruvate transport	2.75E-04
10	GO:0051176: positive regulation of sulfur metabolic process	2.75E-04
11	GO:0080022: primary root development	3.54E-04
12	GO:0034220: ion transmembrane transport	3.54E-04
13	GO:0010087: phloem or xylem histogenesis	3.54E-04
14	GO:0009958: positive gravitropism	3.82E-04
15	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.98E-04
16	GO:0030104: water homeostasis	5.32E-04
17	GO:0015713: phosphoglycerate transport	5.32E-04
18	GO:0009435: NAD biosynthetic process	6.73E-04
19	GO:0006561: proline biosynthetic process	8.23E-04
20	GO:0006751: glutathione catabolic process	8.23E-04
21	GO:0042549: photosystem II stabilization	8.23E-04
22	GO:0010019: chloroplast-nucleus signaling pathway	9.79E-04
23	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	9.79E-04
24	GO:1900057: positive regulation of leaf senescence	1.14E-03
25	GO:0010444: guard mother cell differentiation	1.14E-03
26	GO:1900056: negative regulation of leaf senescence	1.14E-03
27	GO:0010078: maintenance of root meristem identity	1.32E-03
28	GO:0055075: potassium ion homeostasis	1.32E-03
29	GO:0043562: cellular response to nitrogen levels	1.50E-03
30	GO:0009060: aerobic respiration	1.69E-03
31	GO:0009051: pentose-phosphate shunt, oxidative branch	1.69E-03
32	GO:0010205: photoinhibition	1.89E-03
33	GO:0009638: phototropism	1.89E-03
34	GO:0006857: oligopeptide transport	1.97E-03
35	GO:0009688: abscisic acid biosynthetic process	2.10E-03
36	GO:0048829: root cap development	2.10E-03
37	GO:0048367: shoot system development	2.25E-03
38	GO:0043085: positive regulation of catalytic activity	2.31E-03
39	GO:0009750: response to fructose	2.31E-03
40	GO:0048765: root hair cell differentiation	2.31E-03
41	GO:0009684: indoleacetic acid biosynthetic process	2.31E-03
42	GO:0009773: photosynthetic electron transport in photosystem I	2.31E-03
43	GO:0015706: nitrate transport	2.53E-03
44	GO:0051726: regulation of cell cycle	2.76E-03
45	GO:0010628: positive regulation of gene expression	2.76E-03
46	GO:0006006: glucose metabolic process	2.76E-03
47	GO:0009718: anthocyanin-containing compound biosynthetic process	2.76E-03
48	GO:0010207: photosystem II assembly	2.99E-03
49	GO:0048467: gynoecium development	2.99E-03
50	GO:0071732: cellular response to nitric oxide	3.23E-03
51	GO:0010030: positive regulation of seed germination	3.23E-03
52	GO:0010167: response to nitrate	3.23E-03
53	GO:0010025: wax biosynthetic process	3.48E-03
54	GO:0006636: unsaturated fatty acid biosynthetic process	3.48E-03
55	GO:0009651: response to salt stress	3.48E-03
56	GO:0006833: water transport	3.48E-03
57	GO:0006810: transport	3.74E-03
58	GO:0007017: microtubule-based process	3.99E-03
59	GO:0003333: amino acid transmembrane transport	4.26E-03
60	GO:0048511: rhythmic process	4.26E-03
61	GO:0007623: circadian rhythm	4.48E-03
62	GO:0016226: iron-sulfur cluster assembly	4.53E-03
63	GO:0071369: cellular response to ethylene stimulus	4.81E-03
64	GO:0042127: regulation of cell proliferation	5.09E-03
65	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.38E-03
66	GO:0042631: cellular response to water deprivation	5.68E-03
67	GO:0010182: sugar mediated signaling pathway	5.98E-03
68	GO:0010305: leaf vascular tissue pattern formation	5.98E-03
69	GO:0042752: regulation of circadian rhythm	6.28E-03
70	GO:0048825: cotyledon development	6.60E-03
71	GO:0009851: auxin biosynthetic process	6.60E-03
72	GO:0071281: cellular response to iron ion	7.57E-03
73	GO:0007049: cell cycle	7.72E-03
74	GO:0009723: response to ethylene	8.00E-03
75	GO:0009414: response to water deprivation	9.77E-03
76	GO:0071555: cell wall organization	1.01E-02
77	GO:0018298: protein-chromophore linkage	1.08E-02
78	GO:0000160: phosphorelay signal transduction system	1.11E-02
79	GO:0010311: lateral root formation	1.11E-02
80	GO:0006811: ion transport	1.15E-02
81	GO:0048527: lateral root development	1.19E-02
82	GO:0032259: methylation	1.21E-02
83	GO:0006865: amino acid transport	1.23E-02
84	GO:0016042: lipid catabolic process	1.23E-02
85	GO:0009926: auxin polar transport	1.52E-02
86	GO:0009644: response to high light intensity	1.61E-02
87	GO:0009734: auxin-activated signaling pathway	1.79E-02
88	GO:0009736: cytokinin-activated signaling pathway	1.88E-02
89	GO:0009585: red, far-red light phototransduction	1.88E-02
90	GO:0048316: seed development	2.17E-02
91	GO:0009624: response to nematode	2.42E-02
92	GO:0051301: cell division	2.46E-02
93	GO:0009737: response to abscisic acid	2.62E-02
94	GO:0055085: transmembrane transport	2.86E-02
95	GO:0006633: fatty acid biosynthetic process	3.33E-02
96	GO:0006413: translational initiation	3.39E-02
97	GO:0010150: leaf senescence	3.57E-02
98	GO:0006470: protein dephosphorylation	3.92E-02
99	GO:0007166: cell surface receptor signaling pathway	3.92E-02
100	GO:0016567: protein ubiquitination	4.07E-02
101	GO:0042742: defense response to bacterium	4.55E-02
102	GO:0009658: chloroplast organization	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0008987: quinolinate synthetase A activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0004871: signal transducer activity	2.03E-05
5	GO:0046906: tetrapyrrole binding	6.74E-05
6	GO:0030794: (S)-coclaurine-N-methyltransferase activity	6.74E-05
7	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	6.74E-05
8	GO:0045485: omega-6 fatty acid desaturase activity	6.74E-05
9	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	1.62E-04
10	GO:0003839: gamma-glutamylcyclotransferase activity	1.62E-04
11	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	1.62E-04
12	GO:0001872: (1->3)-beta-D-glucan binding	3.98E-04
13	GO:0015120: phosphoglycerate transmembrane transporter activity	5.32E-04
14	GO:0010011: auxin binding	5.32E-04
15	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.32E-04
16	GO:0010328: auxin influx transmembrane transporter activity	5.32E-04
17	GO:0052793: pectin acetylesterase activity	5.32E-04
18	GO:0015250: water channel activity	6.71E-04
19	GO:0016846: carbon-sulfur lyase activity	6.73E-04
20	GO:0004629: phospholipase C activity	8.23E-04
21	GO:0000293: ferric-chelate reductase activity	8.23E-04
22	GO:0035673: oligopeptide transmembrane transporter activity	8.23E-04
23	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	9.50E-04
24	GO:0004017: adenylate kinase activity	9.79E-04
25	GO:0004435: phosphatidylinositol phospholipase C activity	9.79E-04
26	GO:0019899: enzyme binding	1.14E-03
27	GO:0052689: carboxylic ester hydrolase activity	1.39E-03
28	GO:0015293: symporter activity	1.55E-03
29	GO:0015112: nitrate transmembrane transporter activity	1.89E-03
30	GO:0008047: enzyme activator activity	2.10E-03
31	GO:0015198: oligopeptide transporter activity	2.53E-03
32	GO:0004022: alcohol dehydrogenase (NAD) activity	2.76E-03
33	GO:0005528: FK506 binding	3.73E-03
34	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.18E-03
35	GO:0022891: substrate-specific transmembrane transporter activity	4.81E-03
36	GO:0019901: protein kinase binding	6.60E-03
37	GO:0000156: phosphorelay response regulator activity	7.57E-03
38	GO:0016791: phosphatase activity	7.90E-03
39	GO:0005200: structural constituent of cytoskeleton	8.24E-03
40	GO:0008483: transaminase activity	8.24E-03
41	GO:0016168: chlorophyll binding	9.29E-03
42	GO:0030247: polysaccharide binding	1.00E-02
43	GO:0005215: transporter activity	1.14E-02
44	GO:0050661: NADP binding	1.39E-02
45	GO:0051539: 4 iron, 4 sulfur cluster binding	1.39E-02
46	GO:0016491: oxidoreductase activity	1.43E-02
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-02
48	GO:0015171: amino acid transmembrane transporter activity	2.02E-02
49	GO:0031625: ubiquitin protein ligase binding	2.02E-02
50	GO:0004650: polygalacturonase activity	2.26E-02
51	GO:0022857: transmembrane transporter activity	2.31E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.89E-02
53	GO:0016829: lyase activity	3.00E-02
54	GO:0015144: carbohydrate transmembrane transporter activity	3.22E-02
55	GO:0015297: antiporter activity	3.45E-02
56	GO:0005351: sugar:proton symporter activity	3.51E-02
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.23E-02
58	GO:0042802: identical protein binding	4.23E-02
59	GO:0008168: methyltransferase activity	4.73E-02
60	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	9.40E-06
2	GO:0043674: columella	6.74E-05
3	GO:0009507: chloroplast	2.85E-04
4	GO:0015630: microtubule cytoskeleton	3.98E-04
5	GO:0042807: central vacuole	1.14E-03
6	GO:0009986: cell surface	1.14E-03
7	GO:0031969: chloroplast membrane	1.22E-03
8	GO:0008180: COP9 signalosome	1.69E-03
9	GO:0009535: chloroplast thylakoid membrane	1.71E-03
10	GO:0009706: chloroplast inner membrane	2.61E-03
11	GO:0005887: integral component of plasma membrane	2.93E-03
12	GO:0009543: chloroplast thylakoid lumen	3.25E-03
13	GO:0009941: chloroplast envelope	6.27E-03
14	GO:0009523: photosystem II	6.60E-03
15	GO:0019005: SCF ubiquitin ligase complex	1.08E-02
16	GO:0031977: thylakoid lumen	1.44E-02
17	GO:0000502: proteasome complex	1.88E-02
18	GO:0005773: vacuole	2.59E-02
19	GO:0009579: thylakoid	2.70E-02
20	GO:0031225: anchored component of membrane	3.52E-02
21	GO:0009570: chloroplast stroma	3.53E-02
22	GO:0009705: plant-type vacuole membrane	3.57E-02
23	GO:0016020: membrane	3.63E-02
24	GO:0046658: anchored component of plasma membrane	4.35E-02
25	GO:0005774: vacuolar membrane	4.76E-02