Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045176: apical protein localization0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0015805: S-adenosyl-L-methionine transport0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0042493: response to drug0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0032544: plastid translation5.35E-07
13GO:0015976: carbon utilization1.23E-06
14GO:0006412: translation2.49E-06
15GO:0009658: chloroplast organization9.65E-06
16GO:0015979: photosynthesis3.17E-05
17GO:0042335: cuticle development4.89E-05
18GO:0042254: ribosome biogenesis7.70E-05
19GO:2000122: negative regulation of stomatal complex development1.14E-04
20GO:0010037: response to carbon dioxide1.14E-04
21GO:0006810: transport2.10E-04
22GO:0006833: water transport2.17E-04
23GO:0010190: cytochrome b6f complex assembly2.51E-04
24GO:0006869: lipid transport2.62E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway4.45E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.45E-04
27GO:0060627: regulation of vesicle-mediated transport4.45E-04
28GO:0043489: RNA stabilization4.45E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process4.45E-04
30GO:0010442: guard cell morphogenesis4.45E-04
31GO:0046520: sphingoid biosynthetic process4.45E-04
32GO:0042547: cell wall modification involved in multidimensional cell growth4.45E-04
33GO:1904964: positive regulation of phytol biosynthetic process4.45E-04
34GO:0042371: vitamin K biosynthetic process4.45E-04
35GO:0000413: protein peptidyl-prolyl isomerization5.68E-04
36GO:0006633: fatty acid biosynthetic process6.66E-04
37GO:0071555: cell wall organization6.71E-04
38GO:0010583: response to cyclopentenone8.89E-04
39GO:2000123: positive regulation of stomatal complex development9.61E-04
40GO:0010270: photosystem II oxygen evolving complex assembly9.61E-04
41GO:0052541: plant-type cell wall cellulose metabolic process9.61E-04
42GO:0006695: cholesterol biosynthetic process9.61E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process9.61E-04
44GO:0009735: response to cytokinin1.03E-03
45GO:0007267: cell-cell signaling1.12E-03
46GO:0009416: response to light stimulus1.25E-03
47GO:0000038: very long-chain fatty acid metabolic process1.25E-03
48GO:0006816: calcium ion transport1.25E-03
49GO:0009773: photosynthetic electron transport in photosystem I1.25E-03
50GO:0006415: translational termination1.25E-03
51GO:0009409: response to cold1.47E-03
52GO:0090506: axillary shoot meristem initiation1.57E-03
53GO:0015840: urea transport1.57E-03
54GO:0010411: xyloglucan metabolic process1.60E-03
55GO:0010020: chloroplast fission1.83E-03
56GO:0042742: defense response to bacterium2.00E-03
57GO:0007231: osmosensory signaling pathway2.27E-03
58GO:0009650: UV protection2.27E-03
59GO:0006241: CTP biosynthetic process2.27E-03
60GO:0006424: glutamyl-tRNA aminoacylation2.27E-03
61GO:0006165: nucleoside diphosphate phosphorylation2.27E-03
62GO:0006228: UTP biosynthetic process2.27E-03
63GO:0043572: plastid fission2.27E-03
64GO:2001141: regulation of RNA biosynthetic process2.27E-03
65GO:0019762: glucosinolate catabolic process2.29E-03
66GO:0010025: wax biosynthetic process2.29E-03
67GO:0000027: ribosomal large subunit assembly2.54E-03
68GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.63E-03
69GO:0006808: regulation of nitrogen utilization3.05E-03
70GO:0006085: acetyl-CoA biosynthetic process3.05E-03
71GO:0006183: GTP biosynthetic process3.05E-03
72GO:0033500: carbohydrate homeostasis3.05E-03
73GO:0031122: cytoplasmic microtubule organization3.05E-03
74GO:2000038: regulation of stomatal complex development3.05E-03
75GO:0042991: transcription factor import into nucleus3.05E-03
76GO:0006631: fatty acid metabolic process3.07E-03
77GO:0061077: chaperone-mediated protein folding3.08E-03
78GO:0045454: cell redox homeostasis3.40E-03
79GO:0042546: cell wall biogenesis3.59E-03
80GO:0009411: response to UV3.68E-03
81GO:0010375: stomatal complex patterning3.90E-03
82GO:0032543: mitochondrial translation3.90E-03
83GO:0006564: L-serine biosynthetic process3.90E-03
84GO:0048359: mucilage metabolic process involved in seed coat development3.90E-03
85GO:0019722: calcium-mediated signaling4.00E-03
86GO:0034220: ion transmembrane transport4.69E-03
87GO:0048827: phyllome development4.83E-03
88GO:0042549: photosystem II stabilization4.83E-03
89GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.83E-03
90GO:0016554: cytidine to uridine editing4.83E-03
91GO:0006828: manganese ion transport4.83E-03
92GO:0006014: D-ribose metabolic process4.83E-03
93GO:0010555: response to mannitol5.83E-03
94GO:0009955: adaxial/abaxial pattern specification5.83E-03
95GO:0042372: phylloquinone biosynthetic process5.83E-03
96GO:0009612: response to mechanical stimulus5.83E-03
97GO:0010067: procambium histogenesis5.83E-03
98GO:0006694: steroid biosynthetic process5.83E-03
99GO:1901259: chloroplast rRNA processing5.83E-03
100GO:0010019: chloroplast-nucleus signaling pathway5.83E-03
101GO:0048825: cotyledon development5.84E-03
102GO:0009610: response to symbiotic fungus6.89E-03
103GO:0030497: fatty acid elongation6.89E-03
104GO:0009645: response to low light intensity stimulus6.89E-03
105GO:0008272: sulfate transport6.89E-03
106GO:0007155: cell adhesion8.02E-03
107GO:0030091: protein repair8.02E-03
108GO:0009690: cytokinin metabolic process8.02E-03
109GO:0009642: response to light intensity8.02E-03
110GO:0010027: thylakoid membrane organization9.07E-03
111GO:0009808: lignin metabolic process9.21E-03
112GO:0009932: cell tip growth9.21E-03
113GO:0071482: cellular response to light stimulus9.21E-03
114GO:0009657: plastid organization9.21E-03
115GO:0015780: nucleotide-sugar transport1.05E-02
116GO:0045337: farnesyl diphosphate biosynthetic process1.05E-02
117GO:0033384: geranyl diphosphate biosynthetic process1.05E-02
118GO:0015995: chlorophyll biosynthetic process1.07E-02
119GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
120GO:0042761: very long-chain fatty acid biosynthetic process1.18E-02
121GO:1900865: chloroplast RNA modification1.18E-02
122GO:0018298: protein-chromophore linkage1.19E-02
123GO:0006949: syncytium formation1.31E-02
124GO:0009870: defense response signaling pathway, resistance gene-dependent1.31E-02
125GO:0006782: protoporphyrinogen IX biosynthetic process1.31E-02
126GO:0019538: protein metabolic process1.31E-02
127GO:0043069: negative regulation of programmed cell death1.31E-02
128GO:0048829: root cap development1.31E-02
129GO:0010119: regulation of stomatal movement1.38E-02
130GO:0009631: cold acclimation1.38E-02
131GO:0019684: photosynthesis, light reaction1.46E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
133GO:0043085: positive regulation of catalytic activity1.46E-02
134GO:0006352: DNA-templated transcription, initiation1.46E-02
135GO:0018119: peptidyl-cysteine S-nitrosylation1.46E-02
136GO:0009637: response to blue light1.51E-02
137GO:0016051: carbohydrate biosynthetic process1.51E-02
138GO:0055114: oxidation-reduction process1.53E-02
139GO:0045490: pectin catabolic process1.57E-02
140GO:0034599: cellular response to oxidative stress1.58E-02
141GO:0006790: sulfur compound metabolic process1.60E-02
142GO:0016042: lipid catabolic process1.67E-02
143GO:0006839: mitochondrial transport1.72E-02
144GO:0050826: response to freezing1.75E-02
145GO:0009725: response to hormone1.75E-02
146GO:0006006: glucose metabolic process1.75E-02
147GO:0010229: inflorescence development1.75E-02
148GO:0010540: basipetal auxin transport1.91E-02
149GO:0010207: photosystem II assembly1.91E-02
150GO:0010143: cutin biosynthetic process1.91E-02
151GO:0010223: secondary shoot formation1.91E-02
152GO:0019253: reductive pentose-phosphate cycle1.91E-02
153GO:0010114: response to red light1.95E-02
154GO:0055085: transmembrane transport2.01E-02
155GO:0046854: phosphatidylinositol phosphorylation2.07E-02
156GO:0009969: xyloglucan biosynthetic process2.07E-02
157GO:0070588: calcium ion transmembrane transport2.07E-02
158GO:0008643: carbohydrate transport2.11E-02
159GO:0006071: glycerol metabolic process2.24E-02
160GO:0006636: unsaturated fatty acid biosynthetic process2.24E-02
161GO:0019344: cysteine biosynthetic process2.41E-02
162GO:0007010: cytoskeleton organization2.41E-02
163GO:0042538: hyperosmotic salinity response2.45E-02
164GO:0006418: tRNA aminoacylation for protein translation2.59E-02
165GO:0010026: trichome differentiation2.59E-02
166GO:0009768: photosynthesis, light harvesting in photosystem I2.59E-02
167GO:0007017: microtubule-based process2.59E-02
168GO:0009826: unidimensional cell growth2.60E-02
169GO:0009736: cytokinin-activated signaling pathway2.63E-02
170GO:0006813: potassium ion transport2.63E-02
171GO:0003333: amino acid transmembrane transport2.77E-02
172GO:0019748: secondary metabolic process2.95E-02
173GO:0030245: cellulose catabolic process2.95E-02
174GO:0009814: defense response, incompatible interaction2.95E-02
175GO:0080092: regulation of pollen tube growth2.95E-02
176GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.14E-02
177GO:0001944: vasculature development3.14E-02
178GO:0010089: xylem development3.33E-02
179GO:0006284: base-excision repair3.33E-02
180GO:0009793: embryo development ending in seed dormancy3.40E-02
181GO:0010118: stomatal movement3.73E-02
182GO:0000271: polysaccharide biosynthetic process3.73E-02
183GO:0010087: phloem or xylem histogenesis3.73E-02
184GO:0006396: RNA processing3.85E-02
185GO:0048868: pollen tube development3.94E-02
186GO:0045489: pectin biosynthetic process3.94E-02
187GO:0006662: glycerol ether metabolic process3.94E-02
188GO:0019252: starch biosynthetic process4.36E-02
189GO:0016132: brassinosteroid biosynthetic process4.57E-02
190GO:0000302: response to reactive oxygen species4.57E-02
191GO:0071554: cell wall organization or biogenesis4.57E-02
192GO:0002229: defense response to oomycetes4.57E-02
193GO:0032502: developmental process4.79E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
10GO:0019843: rRNA binding1.71E-13
11GO:0003735: structural constituent of ribosome1.18E-08
12GO:0051920: peroxiredoxin activity9.04E-08
13GO:0016209: antioxidant activity3.19E-07
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.06E-07
15GO:0016149: translation release factor activity, codon specific6.54E-05
16GO:0004089: carbonate dehydratase activity1.31E-04
17GO:0009922: fatty acid elongase activity1.76E-04
18GO:0008289: lipid binding1.88E-04
19GO:0005528: FK506 binding2.51E-04
20GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.37E-04
21GO:0016788: hydrolase activity, acting on ester bonds4.12E-04
22GO:0000170: sphingosine hydroxylase activity4.45E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.45E-04
24GO:0008568: microtubule-severing ATPase activity4.45E-04
25GO:0003838: sterol 24-C-methyltransferase activity4.45E-04
26GO:0080132: fatty acid alpha-hydroxylase activity4.45E-04
27GO:0015200: methylammonium transmembrane transporter activity4.45E-04
28GO:0052689: carboxylic ester hydrolase activity7.53E-04
29GO:0003747: translation release factor activity7.90E-04
30GO:0016762: xyloglucan:xyloglucosyl transferase activity8.18E-04
31GO:0042389: omega-3 fatty acid desaturase activity9.61E-04
32GO:0008509: anion transmembrane transporter activity9.61E-04
33GO:0004617: phosphoglycerate dehydrogenase activity9.61E-04
34GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.61E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.61E-04
36GO:0042284: sphingolipid delta-4 desaturase activity9.61E-04
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.61E-04
38GO:0016722: oxidoreductase activity, oxidizing metal ions1.12E-03
39GO:0015250: water channel activity1.30E-03
40GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.57E-03
41GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.57E-03
42GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.57E-03
43GO:0005504: fatty acid binding1.57E-03
44GO:0070330: aromatase activity1.57E-03
45GO:0017150: tRNA dihydrouridine synthase activity1.57E-03
46GO:0050734: hydroxycinnamoyltransferase activity1.57E-03
47GO:0002161: aminoacyl-tRNA editing activity1.57E-03
48GO:0030267: glyoxylate reductase (NADP) activity1.57E-03
49GO:0016798: hydrolase activity, acting on glycosyl bonds1.60E-03
50GO:0008266: poly(U) RNA binding1.83E-03
51GO:0003878: ATP citrate synthase activity2.27E-03
52GO:0004550: nucleoside diphosphate kinase activity2.27E-03
53GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.29E-03
54GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.29E-03
55GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.29E-03
56GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.30E-03
57GO:0004659: prenyltransferase activity3.05E-03
58GO:0001053: plastid sigma factor activity3.05E-03
59GO:0045430: chalcone isomerase activity3.05E-03
60GO:0016987: sigma factor activity3.05E-03
61GO:0010328: auxin influx transmembrane transporter activity3.05E-03
62GO:0043495: protein anchor3.05E-03
63GO:0015204: urea transmembrane transporter activity3.05E-03
64GO:0030570: pectate lyase activity3.68E-03
65GO:0008725: DNA-3-methyladenine glycosylase activity3.90E-03
66GO:0018685: alkane 1-monooxygenase activity3.90E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor3.90E-03
68GO:0004040: amidase activity3.90E-03
69GO:0008514: organic anion transmembrane transporter activity4.00E-03
70GO:0008200: ion channel inhibitor activity4.83E-03
71GO:0008519: ammonium transmembrane transporter activity4.83E-03
72GO:0016208: AMP binding4.83E-03
73GO:0004130: cytochrome-c peroxidase activity4.83E-03
74GO:0016688: L-ascorbate peroxidase activity4.83E-03
75GO:0042802: identical protein binding5.16E-03
76GO:0051753: mannan synthase activity5.83E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.83E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.83E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.83E-03
80GO:0004747: ribokinase activity5.83E-03
81GO:0019899: enzyme binding6.89E-03
82GO:0015140: malate transmembrane transporter activity6.89E-03
83GO:0004601: peroxidase activity6.97E-03
84GO:0004033: aldo-keto reductase (NADP) activity8.02E-03
85GO:0008865: fructokinase activity8.02E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.21E-03
87GO:0016168: chlorophyll binding9.60E-03
88GO:0004337: geranyltranstransferase activity1.05E-02
89GO:0008889: glycerophosphodiester phosphodiesterase activity1.05E-02
90GO:0102483: scopolin beta-glucosidase activity1.07E-02
91GO:0047617: acyl-CoA hydrolase activity1.18E-02
92GO:0005384: manganese ion transmembrane transporter activity1.18E-02
93GO:0030234: enzyme regulator activity1.31E-02
94GO:0008047: enzyme activator activity1.31E-02
95GO:0004871: signal transducer activity1.36E-02
96GO:0005509: calcium ion binding1.41E-02
97GO:0004161: dimethylallyltranstransferase activity1.46E-02
98GO:0005089: Rho guanyl-nucleotide exchange factor activity1.46E-02
99GO:0003993: acid phosphatase activity1.58E-02
100GO:0008378: galactosyltransferase activity1.60E-02
101GO:0000049: tRNA binding1.60E-02
102GO:0008422: beta-glucosidase activity1.65E-02
103GO:0015095: magnesium ion transmembrane transporter activity1.75E-02
104GO:0005262: calcium channel activity1.75E-02
105GO:0004185: serine-type carboxypeptidase activity1.95E-02
106GO:0003824: catalytic activity1.96E-02
107GO:0031409: pigment binding2.24E-02
108GO:0051287: NAD binding2.36E-02
109GO:0004857: enzyme inhibitor activity2.41E-02
110GO:0015079: potassium ion transmembrane transporter activity2.59E-02
111GO:0008324: cation transmembrane transporter activity2.59E-02
112GO:0005516: calmodulin binding2.68E-02
113GO:0019706: protein-cysteine S-palmitoyltransferase activity2.77E-02
114GO:0004176: ATP-dependent peptidase activity2.77E-02
115GO:0033612: receptor serine/threonine kinase binding2.77E-02
116GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.95E-02
117GO:0022891: substrate-specific transmembrane transporter activity3.14E-02
118GO:0008810: cellulase activity3.14E-02
119GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.21E-02
120GO:0004650: polygalacturonase activity3.42E-02
121GO:0030599: pectinesterase activity3.52E-02
122GO:0004812: aminoacyl-tRNA ligase activity3.53E-02
123GO:0005102: receptor binding3.53E-02
124GO:0047134: protein-disulfide reductase activity3.53E-02
125GO:0001085: RNA polymerase II transcription factor binding3.94E-02
126GO:0004791: thioredoxin-disulfide reductase activity4.14E-02
127GO:0019901: protein kinase binding4.36E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast8.78E-30
4GO:0009570: chloroplast stroma1.60E-24
5GO:0009941: chloroplast envelope5.24E-23
6GO:0009579: thylakoid3.00E-16
7GO:0009535: chloroplast thylakoid membrane1.85E-15
8GO:0009543: chloroplast thylakoid lumen1.71E-13
9GO:0048046: apoplast4.26E-13
10GO:0031977: thylakoid lumen4.18E-10
11GO:0046658: anchored component of plasma membrane2.58E-09
12GO:0005840: ribosome3.46E-07
13GO:0031225: anchored component of membrane4.19E-07
14GO:0009534: chloroplast thylakoid7.91E-07
15GO:0009505: plant-type cell wall9.87E-07
16GO:0016020: membrane4.65E-06
17GO:0005576: extracellular region1.43E-05
18GO:0009654: photosystem II oxygen evolving complex1.69E-05
19GO:0005618: cell wall2.89E-05
20GO:0005886: plasma membrane3.02E-05
21GO:0019898: extrinsic component of membrane7.46E-05
22GO:0000311: plastid large ribosomal subunit1.08E-04
23GO:0009547: plastid ribosome4.45E-04
24GO:0009506: plasmodesma5.06E-04
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.90E-04
26GO:0042170: plastid membrane9.61E-04
27GO:0010319: stromule1.12E-03
28GO:0030095: chloroplast photosystem II1.83E-03
29GO:0009346: citrate lyase complex2.27E-03
30GO:0005875: microtubule associated complex2.29E-03
31GO:0042651: thylakoid membrane2.80E-03
32GO:0000793: condensed chromosome4.83E-03
33GO:0009533: chloroplast stromal thylakoid6.89E-03
34GO:0042807: central vacuole6.89E-03
35GO:0000794: condensed nuclear chromosome6.89E-03
36GO:0009706: chloroplast inner membrane7.83E-03
37GO:0009536: plastid9.07E-03
38GO:0005874: microtubule9.18E-03
39GO:0000326: protein storage vacuole9.21E-03
40GO:0005763: mitochondrial small ribosomal subunit1.05E-02
41GO:0045298: tubulin complex1.05E-02
42GO:0022626: cytosolic ribosome1.24E-02
43GO:0016324: apical plasma membrane1.31E-02
44GO:0015934: large ribosomal subunit1.38E-02
45GO:0031012: extracellular matrix1.75E-02
46GO:0030659: cytoplasmic vesicle membrane1.91E-02
47GO:0000312: plastid small ribosomal subunit1.91E-02
48GO:0030076: light-harvesting complex2.07E-02
49GO:0005887: integral component of plasma membrane2.74E-02
50GO:0009532: plastid stroma2.77E-02
51GO:0031969: chloroplast membrane3.57E-02
52GO:0022625: cytosolic large ribosomal subunit3.80E-02
53GO:0005770: late endosome3.94E-02
54GO:0009522: photosystem I4.14E-02
55GO:0005773: vacuole4.33E-02
56GO:0009523: photosystem II4.36E-02
57GO:0010287: plastoglobule4.43E-02
Gene type



Gene DE type