co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015822: ornithine transport	0.00E+00
2	GO:0006546: glycine catabolic process	1.15E-05
3	GO:0016123: xanthophyll biosynthetic process	1.90E-05
4	GO:0017148: negative regulation of translation	4.06E-05
5	GO:0071554: cell wall organization or biogenesis	5.85E-05
6	GO:0071370: cellular response to gibberellin stimulus	1.16E-04
7	GO:0000066: mitochondrial ornithine transport	1.16E-04
8	GO:1903338: regulation of cell wall organization or biogenesis	2.69E-04
9	GO:2000123: positive regulation of stomatal complex development	2.69E-04
10	GO:0060919: auxin influx	2.69E-04
11	GO:0071555: cell wall organization	3.44E-04
12	GO:0006833: water transport	3.52E-04
13	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.45E-04
14	GO:0015840: urea transport	4.45E-04
15	GO:0080167: response to karrikin	5.08E-04
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.38E-04
17	GO:0006241: CTP biosynthetic process	6.38E-04
18	GO:0080170: hydrogen peroxide transmembrane transport	6.38E-04
19	GO:0051016: barbed-end actin filament capping	6.38E-04
20	GO:0006165: nucleoside diphosphate phosphorylation	6.38E-04
21	GO:0006228: UTP biosynthetic process	6.38E-04
22	GO:0016117: carotenoid biosynthetic process	6.61E-04
23	GO:0034220: ion transmembrane transport	7.13E-04
24	GO:0006810: transport	7.52E-04
25	GO:2000122: negative regulation of stomatal complex development	8.47E-04
26	GO:2000038: regulation of stomatal complex development	8.47E-04
27	GO:0009902: chloroplast relocation	8.47E-04
28	GO:0010037: response to carbon dioxide	8.47E-04
29	GO:0006542: glutamine biosynthetic process	8.47E-04
30	GO:0019676: ammonia assimilation cycle	8.47E-04
31	GO:0015976: carbon utilization	8.47E-04
32	GO:0019464: glycine decarboxylation via glycine cleavage system	8.47E-04
33	GO:0009765: photosynthesis, light harvesting	8.47E-04
34	GO:0006183: GTP biosynthetic process	8.47E-04
35	GO:0006749: glutathione metabolic process	8.47E-04
36	GO:0010583: response to cyclopentenone	9.98E-04
37	GO:0010375: stomatal complex patterning	1.07E-03
38	GO:0016120: carotene biosynthetic process	1.07E-03
39	GO:0007267: cell-cell signaling	1.19E-03
40	GO:0045926: negative regulation of growth	1.56E-03
41	GO:0010411: xyloglucan metabolic process	1.56E-03
42	GO:0009554: megasporogenesis	1.56E-03
43	GO:0010555: response to mannitol	1.56E-03
44	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.56E-03
45	GO:2000067: regulation of root morphogenesis	1.56E-03
46	GO:0009617: response to bacterium	1.67E-03
47	GO:0045010: actin nucleation	2.13E-03
48	GO:0052543: callose deposition in cell wall	2.13E-03
49	GO:0007155: cell adhesion	2.13E-03
50	GO:0022900: electron transport chain	2.43E-03
51	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.43E-03
52	GO:0007186: G-protein coupled receptor signaling pathway	2.43E-03
53	GO:0006754: ATP biosynthetic process	2.74E-03
54	GO:0048589: developmental growth	2.74E-03
55	GO:0009744: response to sucrose	2.80E-03
56	GO:0042546: cell wall biogenesis	2.91E-03
57	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.41E-03
58	GO:0048829: root cap development	3.41E-03
59	GO:0010192: mucilage biosynthetic process	3.41E-03
60	GO:0009750: response to fructose	3.76E-03
61	GO:0009773: photosynthetic electron transport in photosystem I	3.76E-03
62	GO:0016024: CDP-diacylglycerol biosynthetic process	4.13E-03
63	GO:0030036: actin cytoskeleton organization	4.50E-03
64	GO:0050826: response to freezing	4.50E-03
65	GO:0009725: response to hormone	4.50E-03
66	GO:0009767: photosynthetic electron transport chain	4.50E-03
67	GO:0048768: root hair cell tip growth	4.89E-03
68	GO:0010143: cutin biosynthetic process	4.89E-03
69	GO:0042545: cell wall modification	5.18E-03
70	GO:0005985: sucrose metabolic process	5.29E-03
71	GO:0009742: brassinosteroid mediated signaling pathway	5.65E-03
72	GO:0006636: unsaturated fatty acid biosynthetic process	5.70E-03
73	GO:0009833: plant-type primary cell wall biogenesis	5.70E-03
74	GO:0007010: cytoskeleton organization	6.12E-03
75	GO:0003333: amino acid transmembrane transport	7.00E-03
76	GO:0080092: regulation of pollen tube growth	7.46E-03
77	GO:0009294: DNA mediated transformation	7.92E-03
78	GO:0019722: calcium-mediated signaling	8.40E-03
79	GO:0045490: pectin catabolic process	9.21E-03
80	GO:0080022: primary root development	9.38E-03
81	GO:0015991: ATP hydrolysis coupled proton transport	9.38E-03
82	GO:0008360: regulation of cell shape	9.89E-03
83	GO:0009741: response to brassinosteroid	9.89E-03
84	GO:0015986: ATP synthesis coupled proton transport	1.04E-02
85	GO:0009749: response to glucose	1.09E-02
86	GO:0005975: carbohydrate metabolic process	1.19E-02
87	GO:1901657: glycosyl compound metabolic process	1.26E-02
88	GO:0055085: transmembrane transport	1.40E-02
89	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.55E-02
90	GO:0016311: dephosphorylation	1.73E-02
91	GO:0016049: cell growth	1.73E-02
92	GO:0030244: cellulose biosynthetic process	1.80E-02
93	GO:0009817: defense response to fungus, incompatible interaction	1.80E-02
94	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.84E-02
95	GO:0009832: plant-type cell wall biogenesis	1.86E-02
96	GO:0048767: root hair elongation	1.86E-02
97	GO:0010311: lateral root formation	1.86E-02
98	GO:0009407: toxin catabolic process	1.92E-02
99	GO:0010119: regulation of stomatal movement	1.99E-02
100	GO:0007568: aging	1.99E-02
101	GO:0006865: amino acid transport	2.06E-02
102	GO:0006839: mitochondrial transport	2.33E-02
103	GO:0009926: auxin polar transport	2.54E-02
104	GO:0016042: lipid catabolic process	2.55E-02
105	GO:0009636: response to toxic substance	2.76E-02
106	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-02
107	GO:0048367: shoot system development	3.63E-02
108	GO:0009740: gibberellic acid mediated signaling pathway	3.87E-02
109	GO:0051726: regulation of cell cycle	4.21E-02
110	GO:0046686: response to cadmium ion	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0030598: rRNA N-glycosylase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0016413: O-acetyltransferase activity	9.39E-05
4	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.16E-04
5	GO:0010313: phytochrome binding	1.16E-04
6	GO:0010291: carotene beta-ring hydroxylase activity	2.69E-04
7	GO:0042389: omega-3 fatty acid desaturase activity	2.69E-04
8	GO:0004047: aminomethyltransferase activity	2.69E-04
9	GO:0000064: L-ornithine transmembrane transporter activity	2.69E-04
10	GO:0001664: G-protein coupled receptor binding	4.45E-04
11	GO:0004148: dihydrolipoyl dehydrogenase activity	4.45E-04
12	GO:0031683: G-protein beta/gamma-subunit complex binding	4.45E-04
13	GO:0004550: nucleoside diphosphate kinase activity	6.38E-04
14	GO:0001872: (1->3)-beta-D-glucan binding	6.38E-04
15	GO:0004375: glycine dehydrogenase (decarboxylating) activity	6.38E-04
16	GO:0048027: mRNA 5'-UTR binding	6.38E-04
17	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.18E-04
18	GO:0015204: urea transmembrane transporter activity	8.47E-04
19	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.47E-04
20	GO:0010328: auxin influx transmembrane transporter activity	8.47E-04
21	GO:0019901: protein kinase binding	8.79E-04
22	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.38E-04
23	GO:0004356: glutamate-ammonia ligase activity	1.07E-03
24	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.31E-03
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.31E-03
26	GO:0015250: water channel activity	1.33E-03
27	GO:0051753: mannan synthase activity	1.56E-03
28	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.56E-03
29	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.56E-03
30	GO:0004564: beta-fructofuranosidase activity	2.13E-03
31	GO:0003843: 1,3-beta-D-glucan synthase activity	2.43E-03
32	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.43E-03
33	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.74E-03
34	GO:0004575: sucrose alpha-glucosidase activity	3.07E-03
35	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.76E-03
36	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.76E-03
37	GO:0016757: transferase activity, transferring glycosyl groups	3.93E-03
38	GO:0045330: aspartyl esterase activity	4.16E-03
39	GO:0004089: carbonate dehydratase activity	4.50E-03
40	GO:0004650: polygalacturonase activity	4.87E-03
41	GO:0030599: pectinesterase activity	5.02E-03
42	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	6.85E-03
43	GO:0016760: cellulose synthase (UDP-forming) activity	7.92E-03
44	GO:0004872: receptor activity	1.09E-02
45	GO:0048038: quinone binding	1.15E-02
46	GO:0004518: nuclease activity	1.20E-02
47	GO:0051015: actin filament binding	1.26E-02
48	GO:0016759: cellulose synthase activity	1.31E-02
49	GO:0016791: phosphatase activity	1.31E-02
50	GO:0005200: structural constituent of cytoskeleton	1.37E-02
51	GO:0008483: transaminase activity	1.37E-02
52	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.37E-02
53	GO:0005507: copper ion binding	1.62E-02
54	GO:0102483: scopolin beta-glucosidase activity	1.67E-02
55	GO:0030247: polysaccharide binding	1.67E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.92E-02
57	GO:0050897: cobalt ion binding	1.99E-02
58	GO:0004871: signal transducer activity	2.23E-02
59	GO:0008422: beta-glucosidase activity	2.26E-02
60	GO:0004364: glutathione transferase activity	2.47E-02
61	GO:0004185: serine-type carboxypeptidase activity	2.54E-02
62	GO:0051537: 2 iron, 2 sulfur cluster binding	2.69E-02
63	GO:0015293: symporter activity	2.76E-02
64	GO:0003777: microtubule motor activity	3.38E-02
65	GO:0015171: amino acid transmembrane transporter activity	3.38E-02
66	GO:0045735: nutrient reservoir activity	3.54E-02
67	GO:0003779: actin binding	3.96E-02
68	GO:0016746: transferase activity, transferring acyl groups	4.13E-02
69	GO:0019843: rRNA binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0031225: anchored component of membrane	2.40E-07
2	GO:0005576: extracellular region	3.77E-06
3	GO:0009505: plant-type cell wall	1.65E-05
4	GO:0005618: cell wall	2.42E-05
5	GO:0046658: anchored component of plasma membrane	2.77E-05
6	GO:0048046: apoplast	9.33E-05
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.11E-04
8	GO:0009344: nitrite reductase complex [NAD(P)H]	1.16E-04
9	GO:0042170: plastid membrane	2.69E-04
10	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	2.69E-04
11	GO:0005960: glycine cleavage complex	6.38E-04
12	GO:0005775: vacuolar lumen	6.38E-04
13	GO:0009543: chloroplast thylakoid lumen	9.02E-04
14	GO:0042807: central vacuole	1.84E-03
15	GO:0016021: integral component of membrane	1.85E-03
16	GO:0009507: chloroplast	1.95E-03
17	GO:0009941: chloroplast envelope	2.36E-03
18	GO:0000326: protein storage vacuole	2.43E-03
19	GO:0000148: 1,3-beta-D-glucan synthase complex	2.43E-03
20	GO:0005886: plasma membrane	2.68E-03
21	GO:0005794: Golgi apparatus	2.70E-03
22	GO:0016324: apical plasma membrane	3.41E-03
23	GO:0048471: perinuclear region of cytoplasm	3.76E-03
24	GO:0030095: chloroplast photosystem II	4.89E-03
25	GO:0005753: mitochondrial proton-transporting ATP synthase complex	5.29E-03
26	GO:0005758: mitochondrial intermembrane space	6.12E-03
27	GO:0009654: photosystem II oxygen evolving complex	6.56E-03
28	GO:0019898: extrinsic component of membrane	1.09E-02
29	GO:0009534: chloroplast thylakoid	1.32E-02
30	GO:0005774: vacuolar membrane	1.32E-02
31	GO:0031969: chloroplast membrane	1.78E-02
32	GO:0009707: chloroplast outer membrane	1.80E-02
33	GO:0000325: plant-type vacuole	1.99E-02
34	GO:0009535: chloroplast thylakoid membrane	2.13E-02
35	GO:0016020: membrane	2.30E-02
36	GO:0031902: late endosome membrane	2.40E-02
37	GO:0031977: thylakoid lumen	2.40E-02
38	GO:0005856: cytoskeleton	2.76E-02
39	GO:0005887: integral component of plasma membrane	3.56E-02
40	GO:0005747: mitochondrial respiratory chain complex I	3.63E-02
41	GO:0005834: heterotrimeric G-protein complex	3.71E-02
42	GO:0009706: chloroplast inner membrane	4.04E-02
43	GO:0022626: cytosolic ribosome	4.44E-02
44	GO:0005623: cell	4.83E-02