co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0009658: chloroplast organization	5.05E-09
8	GO:0032544: plastid translation	2.22E-07
9	GO:0006457: protein folding	8.24E-07
10	GO:0006412: translation	1.55E-06
11	GO:0009790: embryo development	2.50E-05
12	GO:0010027: thylakoid membrane organization	2.62E-05
13	GO:0045036: protein targeting to chloroplast	5.94E-05
14	GO:0042254: ribosome biogenesis	8.18E-05
15	GO:0006423: cysteinyl-tRNA aminoacylation	1.44E-04
16	GO:0006568: tryptophan metabolic process	1.44E-04
17	GO:0010270: photosystem II oxygen evolving complex assembly	1.44E-04
18	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.46E-04
19	GO:0009793: embryo development ending in seed dormancy	2.98E-04
20	GO:0000413: protein peptidyl-prolyl isomerization	3.00E-04
21	GO:0006241: CTP biosynthetic process	3.57E-04
22	GO:0019048: modulation by virus of host morphology or physiology	3.57E-04
23	GO:0043572: plastid fission	3.57E-04
24	GO:2001141: regulation of RNA biosynthetic process	3.57E-04
25	GO:0006165: nucleoside diphosphate phosphorylation	3.57E-04
26	GO:0006228: UTP biosynthetic process	3.57E-04
27	GO:0031048: chromatin silencing by small RNA	3.57E-04
28	GO:0051085: chaperone mediated protein folding requiring cofactor	3.57E-04
29	GO:0006424: glutamyl-tRNA aminoacylation	3.57E-04
30	GO:0006808: regulation of nitrogen utilization	4.78E-04
31	GO:0051567: histone H3-K9 methylation	4.78E-04
32	GO:0006183: GTP biosynthetic process	4.78E-04
33	GO:0045038: protein import into chloroplast thylakoid membrane	6.05E-04
34	GO:0048359: mucilage metabolic process involved in seed coat development	6.05E-04
35	GO:0032543: mitochondrial translation	6.05E-04
36	GO:0015995: chlorophyll biosynthetic process	6.71E-04
37	GO:0016458: gene silencing	7.40E-04
38	GO:0009817: defense response to fungus, incompatible interaction	7.40E-04
39	GO:0006828: manganese ion transport	7.40E-04
40	GO:0042549: photosystem II stabilization	7.40E-04
41	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.40E-04
42	GO:0042026: protein refolding	8.82E-04
43	GO:0010555: response to mannitol	8.82E-04
44	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.03E-03
45	GO:0009642: response to light intensity	1.18E-03
46	GO:0009657: plastid organization	1.35E-03
47	GO:0071482: cellular response to light stimulus	1.35E-03
48	GO:0006783: heme biosynthetic process	1.52E-03
49	GO:0015780: nucleotide-sugar transport	1.52E-03
50	GO:0042742: defense response to bacterium	1.62E-03
51	GO:0043067: regulation of programmed cell death	1.69E-03
52	GO:0006779: porphyrin-containing compound biosynthetic process	1.69E-03
53	GO:0030422: production of siRNA involved in RNA interference	1.88E-03
54	GO:0006782: protoporphyrinogen IX biosynthetic process	1.88E-03
55	GO:0006352: DNA-templated transcription, initiation	2.07E-03
56	GO:0006816: calcium ion transport	2.07E-03
57	GO:0006415: translational termination	2.07E-03
58	GO:0009073: aromatic amino acid family biosynthetic process	2.07E-03
59	GO:0045037: protein import into chloroplast stroma	2.27E-03
60	GO:0009409: response to cold	2.56E-03
61	GO:0010020: chloroplast fission	2.68E-03
62	GO:0010207: photosystem II assembly	2.68E-03
63	GO:0000027: ribosomal large subunit assembly	3.34E-03
64	GO:0019344: cysteine biosynthetic process	3.34E-03
65	GO:0006418: tRNA aminoacylation for protein translation	3.57E-03
66	GO:0006306: DNA methylation	3.81E-03
67	GO:0016114: terpenoid biosynthetic process	3.81E-03
68	GO:0007005: mitochondrion organization	4.05E-03
69	GO:0009411: response to UV	4.30E-03
70	GO:0016117: carotenoid biosynthetic process	4.81E-03
71	GO:0010197: polar nucleus fusion	5.34E-03
72	GO:0006342: chromatin silencing	5.34E-03
73	GO:0007018: microtubule-based movement	5.61E-03
74	GO:0016310: phosphorylation	6.32E-03
75	GO:0016032: viral process	6.46E-03
76	GO:0051607: defense response to virus	7.65E-03
77	GO:0009816: defense response to bacterium, incompatible interaction	8.28E-03
78	GO:0009627: systemic acquired resistance	8.60E-03
79	GO:0045454: cell redox homeostasis	8.70E-03
80	GO:0008219: cell death	9.59E-03
81	GO:0048481: plant ovule development	9.59E-03
82	GO:0009637: response to blue light	1.13E-02
83	GO:0042542: response to hydrogen peroxide	1.32E-02
84	GO:0010114: response to red light	1.35E-02
85	GO:0008643: carbohydrate transport	1.43E-02
86	GO:0006364: rRNA processing	1.67E-02
87	GO:0009585: red, far-red light phototransduction	1.67E-02
88	GO:0009735: response to cytokinin	1.75E-02
89	GO:0006417: regulation of translation	1.80E-02
90	GO:0006414: translational elongation	2.85E-02
91	GO:0006633: fatty acid biosynthetic process	2.97E-02
92	GO:0040008: regulation of growth	3.07E-02

Rank	GO Term	Adjusted P value
1	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0019843: rRNA binding	1.54E-08
10	GO:0003735: structural constituent of ribosome	3.32E-06
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.02E-06
12	GO:0051920: peroxiredoxin activity	1.38E-05
13	GO:0016209: antioxidant activity	2.51E-05
14	GO:0004655: porphobilinogen synthase activity	5.94E-05
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.94E-05
16	GO:0000774: adenyl-nucleotide exchange factor activity	1.44E-04
17	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.44E-04
18	GO:0004817: cysteine-tRNA ligase activity	1.44E-04
19	GO:0051082: unfolded protein binding	2.16E-04
20	GO:0017150: tRNA dihydrouridine synthase activity	2.46E-04
21	GO:0030267: glyoxylate reductase (NADP) activity	2.46E-04
22	GO:0002161: aminoacyl-tRNA editing activity	2.46E-04
23	GO:0004550: nucleoside diphosphate kinase activity	3.57E-04
24	GO:0043023: ribosomal large subunit binding	3.57E-04
25	GO:0035197: siRNA binding	3.57E-04
26	GO:0016149: translation release factor activity, codon specific	3.57E-04
27	GO:0016987: sigma factor activity	4.78E-04
28	GO:0001053: plastid sigma factor activity	4.78E-04
29	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.78E-04
30	GO:0008237: metallopeptidase activity	5.12E-04
31	GO:0016773: phosphotransferase activity, alcohol group as acceptor	6.05E-04
32	GO:0004040: amidase activity	6.05E-04
33	GO:0004222: metalloendopeptidase activity	8.13E-04
34	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.82E-04
35	GO:0003746: translation elongation factor activity	9.27E-04
36	GO:0016831: carboxy-lyase activity	1.03E-03
37	GO:0008312: 7S RNA binding	1.18E-03
38	GO:0003747: translation release factor activity	1.52E-03
39	GO:0003924: GTPase activity	1.62E-03
40	GO:0005384: manganese ion transmembrane transporter activity	1.69E-03
41	GO:0044183: protein binding involved in protein folding	2.07E-03
42	GO:0000049: tRNA binding	2.27E-03
43	GO:0004521: endoribonuclease activity	2.27E-03
44	GO:0005524: ATP binding	2.46E-03
45	GO:0015095: magnesium ion transmembrane transporter activity	2.47E-03
46	GO:0008081: phosphoric diester hydrolase activity	2.47E-03
47	GO:0016887: ATPase activity	2.81E-03
48	GO:0003729: mRNA binding	2.96E-03
49	GO:0051087: chaperone binding	3.57E-03
50	GO:0004176: ATP-dependent peptidase activity	3.81E-03
51	GO:0008514: organic anion transmembrane transporter activity	4.55E-03
52	GO:0004812: aminoacyl-tRNA ligase activity	4.81E-03
53	GO:0008080: N-acetyltransferase activity	5.34E-03
54	GO:0000287: magnesium ion binding	5.75E-03
55	GO:0004601: peroxidase activity	5.86E-03
56	GO:0005525: GTP binding	6.26E-03
57	GO:0042803: protein homodimerization activity	9.11E-03
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.59E-03
59	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.67E-02
60	GO:0003777: microtubule motor activity	1.80E-02
61	GO:0005507: copper ion binding	2.72E-02
62	GO:0008565: protein transporter activity	2.86E-02
63	GO:0008017: microtubule binding	3.28E-02
64	GO:0042802: identical protein binding	3.76E-02
65	GO:0003682: chromatin binding	4.50E-02
66	GO:0050660: flavin adenine dinucleotide binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009507: chloroplast	3.46E-38
3	GO:0009570: chloroplast stroma	3.00E-32
4	GO:0009941: chloroplast envelope	2.65E-20
5	GO:0005840: ribosome	2.97E-07
6	GO:0009579: thylakoid	9.96E-06
7	GO:0009535: chloroplast thylakoid membrane	4.47E-05
8	GO:0009534: chloroplast thylakoid	1.10E-04
9	GO:0080085: signal recognition particle, chloroplast targeting	1.44E-04
10	GO:0009706: chloroplast inner membrane	2.16E-04
11	GO:0009543: chloroplast thylakoid lumen	2.92E-04
12	GO:0005623: cell	3.02E-04
13	GO:0005719: nuclear euchromatin	3.57E-04
14	GO:0009536: plastid	4.45E-04
15	GO:0010319: stromule	5.12E-04
16	GO:0022626: cytosolic ribosome	5.26E-04
17	GO:0009533: chloroplast stromal thylakoid	1.03E-03
18	GO:0022625: cytosolic large ribosomal subunit	1.06E-03
19	GO:0031977: thylakoid lumen	1.09E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.35E-03
21	GO:0015030: Cajal body	1.69E-03
22	GO:0000311: plastid large ribosomal subunit	2.27E-03
23	GO:0005739: mitochondrion	2.56E-03
24	GO:0005759: mitochondrial matrix	3.46E-03
25	GO:0009532: plastid stroma	3.81E-03
26	GO:0005871: kinesin complex	4.81E-03
27	GO:0005622: intracellular	6.90E-03
28	GO:0031969: chloroplast membrane	7.26E-03
29	GO:0030529: intracellular ribonucleoprotein complex	7.97E-03
30	GO:0009707: chloroplast outer membrane	9.59E-03
31	GO:0010287: plastoglobule	2.43E-02
32	GO:0005654: nucleoplasm	2.47E-02
33	GO:0016020: membrane	2.49E-02
34	GO:0046658: anchored component of plasma membrane	3.87E-02
35	GO:0048046: apoplast	4.13E-02
36	GO:0005874: microtubule	4.92E-02