Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G51660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006105: succinate metabolic process0.00E+00
2GO:0019484: beta-alanine catabolic process0.00E+00
3GO:0046459: short-chain fatty acid metabolic process0.00E+00
4GO:0019481: L-alanine catabolic process, by transamination0.00E+00
5GO:0010398: xylogalacturonan metabolic process0.00E+00
6GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
7GO:0042344: indole glucosinolate catabolic process1.18E-05
8GO:0052544: defense response by callose deposition in cell wall2.71E-05
9GO:0010184: cytokinin transport2.68E-04
10GO:1902265: abscisic acid homeostasis2.68E-04
11GO:0009865: pollen tube adhesion2.68E-04
12GO:0071366: cellular response to indolebutyric acid stimulus2.68E-04
13GO:0006540: glutamate decarboxylation to succinate2.68E-04
14GO:0046167: glycerol-3-phosphate biosynthetic process2.68E-04
15GO:0035266: meristem growth2.68E-04
16GO:0009450: gamma-aminobutyric acid catabolic process2.68E-04
17GO:0007292: female gamete generation2.68E-04
18GO:1990641: response to iron ion starvation2.68E-04
19GO:0030187: melatonin biosynthetic process5.89E-04
20GO:0051788: response to misfolded protein5.89E-04
21GO:0009308: amine metabolic process5.89E-04
22GO:0009257: 10-formyltetrahydrofolate biosynthetic process5.89E-04
23GO:0010033: response to organic substance5.89E-04
24GO:0006641: triglyceride metabolic process5.89E-04
25GO:0009727: detection of ethylene stimulus5.89E-04
26GO:0006101: citrate metabolic process5.89E-04
27GO:0002237: response to molecule of bacterial origin8.84E-04
28GO:0019563: glycerol catabolic process9.55E-04
29GO:1900140: regulation of seedling development9.55E-04
30GO:0042256: mature ribosome assembly9.55E-04
31GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway9.55E-04
32GO:0060968: regulation of gene silencing9.55E-04
33GO:0006468: protein phosphorylation1.27E-03
34GO:0006072: glycerol-3-phosphate metabolic process1.36E-03
35GO:0015749: monosaccharide transport1.36E-03
36GO:1901332: negative regulation of lateral root development1.36E-03
37GO:0006809: nitric oxide biosynthetic process1.36E-03
38GO:0009399: nitrogen fixation1.36E-03
39GO:0009963: positive regulation of flavonoid biosynthetic process1.36E-03
40GO:0006882: cellular zinc ion homeostasis1.36E-03
41GO:0019438: aromatic compound biosynthetic process1.36E-03
42GO:0006624: vacuolar protein processing1.36E-03
43GO:0048194: Golgi vesicle budding1.36E-03
44GO:0006020: inositol metabolic process1.36E-03
45GO:0070301: cellular response to hydrogen peroxide1.36E-03
46GO:0072334: UDP-galactose transmembrane transport1.36E-03
47GO:0009113: purine nucleobase biosynthetic process1.36E-03
48GO:0071215: cellular response to abscisic acid stimulus1.74E-03
49GO:0010600: regulation of auxin biosynthetic process1.83E-03
50GO:0010188: response to microbial phytotoxin1.83E-03
51GO:0006878: cellular copper ion homeostasis1.83E-03
52GO:0006542: glutamine biosynthetic process1.83E-03
53GO:0006646: phosphatidylethanolamine biosynthetic process1.83E-03
54GO:0009687: abscisic acid metabolic process1.83E-03
55GO:0015743: malate transport1.83E-03
56GO:1902584: positive regulation of response to water deprivation1.83E-03
57GO:0006536: glutamate metabolic process1.83E-03
58GO:0042273: ribosomal large subunit biogenesis1.83E-03
59GO:0007165: signal transduction1.85E-03
60GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA2.33E-03
61GO:0043097: pyrimidine nucleoside salvage2.33E-03
62GO:0046323: glucose import2.39E-03
63GO:0048367: shoot system development2.45E-03
64GO:0048544: recognition of pollen2.56E-03
65GO:0008654: phospholipid biosynthetic process2.75E-03
66GO:0006206: pyrimidine nucleobase metabolic process2.88E-03
67GO:0050665: hydrogen peroxide biosynthetic process2.88E-03
68GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.88E-03
69GO:0000741: karyogamy2.88E-03
70GO:0015691: cadmium ion transport2.88E-03
71GO:0048827: phyllome development2.88E-03
72GO:0016070: RNA metabolic process2.88E-03
73GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.88E-03
74GO:0048232: male gamete generation2.88E-03
75GO:0043248: proteasome assembly2.88E-03
76GO:0042732: D-xylose metabolic process2.88E-03
77GO:0046686: response to cadmium ion2.91E-03
78GO:0006635: fatty acid beta-oxidation2.94E-03
79GO:0080167: response to karrikin3.04E-03
80GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.46E-03
81GO:0006694: steroid biosynthetic process3.46E-03
82GO:0042742: defense response to bacterium3.72E-03
83GO:0010286: heat acclimation3.78E-03
84GO:0009396: folic acid-containing compound biosynthetic process4.08E-03
85GO:0010044: response to aluminum ion4.08E-03
86GO:0009395: phospholipid catabolic process4.08E-03
87GO:0001666: response to hypoxia4.25E-03
88GO:0009690: cytokinin metabolic process4.73E-03
89GO:0009819: drought recovery4.73E-03
90GO:0009415: response to water4.73E-03
91GO:0010078: maintenance of root meristem identity4.73E-03
92GO:0006102: isocitrate metabolic process4.73E-03
93GO:0016559: peroxisome fission4.73E-03
94GO:0006644: phospholipid metabolic process4.73E-03
95GO:0009061: anaerobic respiration4.73E-03
96GO:0010928: regulation of auxin mediated signaling pathway4.73E-03
97GO:0010262: somatic embryogenesis5.42E-03
98GO:0001510: RNA methylation5.42E-03
99GO:0009808: lignin metabolic process5.42E-03
100GO:0009817: defense response to fungus, incompatible interaction5.54E-03
101GO:0006811: ion transport6.11E-03
102GO:0046916: cellular transition metal ion homeostasis6.14E-03
103GO:0006098: pentose-phosphate shunt6.14E-03
104GO:0009631: cold acclimation6.40E-03
105GO:0010119: regulation of stomatal movement6.40E-03
106GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.90E-03
107GO:0035999: tetrahydrofolate interconversion6.90E-03
108GO:0045087: innate immune response7.02E-03
109GO:0006099: tricarboxylic acid cycle7.34E-03
110GO:0009970: cellular response to sulfate starvation7.68E-03
111GO:0006535: cysteine biosynthetic process from serine7.68E-03
112GO:0006995: cellular response to nitrogen starvation7.68E-03
113GO:0048829: root cap development7.68E-03
114GO:0009641: shade avoidance7.68E-03
115GO:0055062: phosphate ion homeostasis7.68E-03
116GO:0051555: flavonol biosynthetic process7.68E-03
117GO:0009682: induced systemic resistance8.50E-03
118GO:0006378: mRNA polyadenylation8.50E-03
119GO:0010015: root morphogenesis8.50E-03
120GO:0042542: response to hydrogen peroxide8.70E-03
121GO:0010105: negative regulation of ethylene-activated signaling pathway9.35E-03
122GO:0071365: cellular response to auxin stimulus9.35E-03
123GO:2000012: regulation of auxin polar transport1.02E-02
124GO:0006807: nitrogen compound metabolic process1.02E-02
125GO:0000165: MAPK cascade1.10E-02
126GO:0006541: glutamine metabolic process1.11E-02
127GO:0009933: meristem structural organization1.11E-02
128GO:0005985: sucrose metabolic process1.21E-02
129GO:0090351: seedling development1.21E-02
130GO:0010030: positive regulation of seed germination1.21E-02
131GO:0009969: xyloglucan biosynthetic process1.21E-02
132GO:0007031: peroxisome organization1.21E-02
133GO:0009809: lignin biosynthetic process1.22E-02
134GO:0009723: response to ethylene1.26E-02
135GO:0051603: proteolysis involved in cellular protein catabolic process1.27E-02
136GO:0034976: response to endoplasmic reticulum stress1.30E-02
137GO:0006863: purine nucleobase transport1.30E-02
138GO:0000162: tryptophan biosynthetic process1.30E-02
139GO:0019344: cysteine biosynthetic process1.40E-02
140GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.43E-02
141GO:0009733: response to auxin1.48E-02
142GO:0006825: copper ion transport1.50E-02
143GO:0009651: response to salt stress1.51E-02
144GO:0044550: secondary metabolite biosynthetic process1.53E-02
145GO:0009626: plant-type hypersensitive response1.54E-02
146GO:0009269: response to desiccation1.61E-02
147GO:0031408: oxylipin biosynthetic process1.61E-02
148GO:0009737: response to abscisic acid1.62E-02
149GO:0030433: ubiquitin-dependent ERAD pathway1.71E-02
150GO:0035428: hexose transmembrane transport1.71E-02
151GO:0031348: negative regulation of defense response1.71E-02
152GO:0071456: cellular response to hypoxia1.71E-02
153GO:0006396: RNA processing1.80E-02
154GO:0009693: ethylene biosynthetic process1.82E-02
155GO:0001944: vasculature development1.82E-02
156GO:0009625: response to insect1.82E-02
157GO:0055114: oxidation-reduction process2.08E-02
158GO:0080022: primary root development2.17E-02
159GO:0042391: regulation of membrane potential2.17E-02
160GO:0015991: ATP hydrolysis coupled proton transport2.17E-02
161GO:0042631: cellular response to water deprivation2.17E-02
162GO:0009408: response to heat2.24E-02
163GO:0045489: pectin biosynthetic process2.29E-02
164GO:0010154: fruit development2.29E-02
165GO:0010197: polar nucleus fusion2.29E-02
166GO:0010182: sugar mediated signaling pathway2.29E-02
167GO:0008360: regulation of cell shape2.29E-02
168GO:0006885: regulation of pH2.29E-02
169GO:0006520: cellular amino acid metabolic process2.29E-02
170GO:0048364: root development2.37E-02
171GO:0009646: response to absence of light2.41E-02
172GO:0010183: pollen tube guidance2.53E-02
173GO:0009790: embryo development2.56E-02
174GO:0010583: response to cyclopentenone2.78E-02
175GO:0071281: cellular response to iron ion2.91E-02
176GO:0010150: leaf senescence3.02E-02
177GO:0010252: auxin homeostasis3.04E-02
178GO:0006914: autophagy3.04E-02
179GO:0019760: glucosinolate metabolic process3.04E-02
180GO:0051607: defense response to virus3.31E-02
181GO:0007166: cell surface receptor signaling pathway3.45E-02
182GO:0016126: sterol biosynthetic process3.45E-02
183GO:0009617: response to bacterium3.60E-02
184GO:0010468: regulation of gene expression3.60E-02
185GO:0009627: systemic acquired resistance3.73E-02
186GO:0042128: nitrate assimilation3.73E-02
187GO:0048573: photoperiodism, flowering3.88E-02
188GO:0006950: response to stress3.88E-02
189GO:0016049: cell growth4.02E-02
190GO:0008219: cell death4.17E-02
191GO:0010311: lateral root formation4.32E-02
192GO:0006499: N-terminal protein myristoylation4.47E-02
193GO:0010043: response to zinc ion4.62E-02
194GO:0035556: intracellular signal transduction4.88E-02
195GO:0016051: carbohydrate biosynthetic process4.93E-02
RankGO TermAdjusted P value
1GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
2GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
3GO:0004370: glycerol kinase activity0.00E+00
4GO:0015211: purine nucleoside transmembrane transporter activity0.00E+00
5GO:0030755: quercetin 3-O-methyltransferase activity0.00E+00
6GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
7GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
8GO:0033799: myricetin 3'-O-methyltransferase activity0.00E+00
9GO:0047205: quinate O-hydroxycinnamoyltransferase activity0.00E+00
10GO:0047172: shikimate O-hydroxycinnamoyltransferase activity0.00E+00
11GO:0047763: caffeate O-methyltransferase activity0.00E+00
12GO:0030744: luteolin O-methyltransferase activity0.00E+00
13GO:0009045: xylose isomerase activity0.00E+00
14GO:0050897: cobalt ion binding5.51E-06
15GO:0005524: ATP binding2.21E-05
16GO:0016301: kinase activity9.15E-05
17GO:0004525: ribonuclease III activity2.55E-04
18GO:0052595: aliphatic-amine oxidase activity2.68E-04
19GO:0004112: cyclic-nucleotide phosphodiesterase activity2.68E-04
20GO:0003867: 4-aminobutyrate transaminase activity2.68E-04
21GO:0017096: acetylserotonin O-methyltransferase activity2.68E-04
22GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.68E-04
23GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity2.68E-04
24GO:0009679: hexose:proton symporter activity2.68E-04
25GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity2.68E-04
26GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity2.68E-04
27GO:0046870: cadmium ion binding2.68E-04
28GO:0050200: plasmalogen synthase activity2.68E-04
29GO:0005507: copper ion binding5.07E-04
30GO:0004329: formate-tetrahydrofolate ligase activity5.89E-04
31GO:0019200: carbohydrate kinase activity5.89E-04
32GO:0047209: coniferyl-alcohol glucosyltransferase activity5.89E-04
33GO:0004352: glutamate dehydrogenase (NAD+) activity5.89E-04
34GO:0004353: glutamate dehydrogenase [NAD(P)+] activity5.89E-04
35GO:0004566: beta-glucuronidase activity5.89E-04
36GO:0032791: lead ion binding5.89E-04
37GO:0004609: phosphatidylserine decarboxylase activity5.89E-04
38GO:0003994: aconitate hydratase activity5.89E-04
39GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity5.89E-04
40GO:0004477: methenyltetrahydrofolate cyclohydrolase activity5.89E-04
41GO:0004839: ubiquitin activating enzyme activity5.89E-04
42GO:0038199: ethylene receptor activity5.89E-04
43GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity5.89E-04
44GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.86E-04
45GO:0017150: tRNA dihydrouridine synthase activity9.55E-04
46GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.55E-04
47GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity9.55E-04
48GO:0004383: guanylate cyclase activity9.55E-04
49GO:0004096: catalase activity9.55E-04
50GO:0019829: cation-transporting ATPase activity9.55E-04
51GO:0015086: cadmium ion transmembrane transporter activity1.36E-03
52GO:0004108: citrate (Si)-synthase activity1.36E-03
53GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.36E-03
54GO:0000339: RNA cap binding1.36E-03
55GO:0051740: ethylene binding1.36E-03
56GO:0001653: peptide receptor activity1.36E-03
57GO:0048027: mRNA 5'-UTR binding1.36E-03
58GO:0004707: MAP kinase activity1.46E-03
59GO:0005253: anion channel activity1.83E-03
60GO:0004576: oligosaccharyl transferase activity1.83E-03
61GO:0004834: tryptophan synthase activity1.83E-03
62GO:0004737: pyruvate decarboxylase activity1.83E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.83E-03
64GO:0003995: acyl-CoA dehydrogenase activity1.83E-03
65GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.33E-03
66GO:0003997: acyl-CoA oxidase activity2.33E-03
67GO:0004356: glutamate-ammonia ligase activity2.33E-03
68GO:0010294: abscisic acid glucosyltransferase activity2.33E-03
69GO:0005459: UDP-galactose transmembrane transporter activity2.33E-03
70GO:0015145: monosaccharide transmembrane transporter activity2.33E-03
71GO:0008641: small protein activating enzyme activity2.33E-03
72GO:0019137: thioglucosidase activity2.88E-03
73GO:0035252: UDP-xylosyltransferase activity2.88E-03
74GO:0000293: ferric-chelate reductase activity2.88E-03
75GO:0036402: proteasome-activating ATPase activity2.88E-03
76GO:0030976: thiamine pyrophosphate binding2.88E-03
77GO:0070300: phosphatidic acid binding3.46E-03
78GO:0004012: phospholipid-translocating ATPase activity3.46E-03
79GO:0004124: cysteine synthase activity3.46E-03
80GO:0004849: uridine kinase activity3.46E-03
81GO:0015140: malate transmembrane transporter activity4.08E-03
82GO:0004620: phospholipase activity4.08E-03
83GO:0016831: carboxy-lyase activity4.08E-03
84GO:0005375: copper ion transmembrane transporter activity5.42E-03
85GO:0004674: protein serine/threonine kinase activity5.61E-03
86GO:0005351: sugar:proton symporter activity5.81E-03
87GO:0000989: transcription factor activity, transcription factor binding6.14E-03
88GO:0071949: FAD binding6.14E-03
89GO:0047617: acyl-CoA hydrolase activity6.90E-03
90GO:0008422: beta-glucosidase activity7.67E-03
91GO:0004713: protein tyrosine kinase activity7.68E-03
92GO:0004673: protein histidine kinase activity7.68E-03
93GO:0008171: O-methyltransferase activity7.68E-03
94GO:0015020: glucuronosyltransferase activity7.68E-03
95GO:0042626: ATPase activity, coupled to transmembrane movement of substances8.11E-03
96GO:0042802: identical protein binding8.11E-03
97GO:0004177: aminopeptidase activity8.50E-03
98GO:0047372: acylglycerol lipase activity8.50E-03
99GO:0008081: phosphoric diester hydrolase activity1.02E-02
100GO:0000155: phosphorelay sensor kinase activity1.02E-02
101GO:0008131: primary amine oxidase activity1.11E-02
102GO:0004175: endopeptidase activity1.11E-02
103GO:0030552: cAMP binding1.21E-02
104GO:0030553: cGMP binding1.21E-02
105GO:0017025: TBP-class protein binding1.21E-02
106GO:0004497: monooxygenase activity1.37E-02
107GO:0043424: protein histidine kinase binding1.50E-02
108GO:0005216: ion channel activity1.50E-02
109GO:0005345: purine nucleobase transmembrane transporter activity1.50E-02
110GO:0080043: quercetin 3-O-glucosyltransferase activity1.59E-02
111GO:0080044: quercetin 7-O-glucosyltransferase activity1.59E-02
112GO:0016740: transferase activity1.77E-02
113GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.90E-02
114GO:0004722: protein serine/threonine phosphatase activity1.94E-02
115GO:0003756: protein disulfide isomerase activity1.94E-02
116GO:0030551: cyclic nucleotide binding2.17E-02
117GO:0005451: monovalent cation:proton antiporter activity2.17E-02
118GO:0005249: voltage-gated potassium channel activity2.17E-02
119GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.25E-02
120GO:0004672: protein kinase activity2.33E-02
121GO:0015299: solute:proton antiporter activity2.41E-02
122GO:0010181: FMN binding2.41E-02
123GO:0005355: glucose transmembrane transporter activity2.41E-02
124GO:0030170: pyridoxal phosphate binding2.43E-02
125GO:0015144: carbohydrate transmembrane transporter activity2.62E-02
126GO:0020037: heme binding2.63E-02
127GO:0048038: quinone binding2.65E-02
128GO:0004197: cysteine-type endopeptidase activity2.78E-02
129GO:0000156: phosphorelay response regulator activity2.91E-02
130GO:0015385: sodium:proton antiporter activity2.91E-02
131GO:0016791: phosphatase activity3.04E-02
132GO:0005509: calcium ion binding3.32E-02
133GO:0008194: UDP-glycosyltransferase activity3.38E-02
134GO:0005506: iron ion binding3.65E-02
135GO:0008375: acetylglucosaminyltransferase activity3.73E-02
136GO:0016887: ATPase activity3.87E-02
137GO:0004721: phosphoprotein phosphatase activity3.88E-02
138GO:0030247: polysaccharide binding3.88E-02
139GO:0102483: scopolin beta-glucosidase activity3.88E-02
140GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.02E-02
141GO:0005215: transporter activity4.31E-02
142GO:0005096: GTPase activator activity4.32E-02
143GO:0046982: protein heterodimerization activity4.57E-02
144GO:0000287: magnesium ion binding4.57E-02
145GO:0030145: manganese ion binding4.62E-02
146GO:0016788: hydrolase activity, acting on ester bonds4.74E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane5.49E-09
2GO:0016021: integral component of membrane1.13E-06
3GO:0005777: peroxisome6.16E-05
4GO:0016020: membrane4.30E-04
5GO:0005783: endoplasmic reticulum9.30E-04
6GO:0005849: mRNA cleavage factor complex1.36E-03
7GO:0000323: lytic vacuole1.36E-03
8GO:0005776: autophagosome1.83E-03
9GO:0033179: proton-transporting V-type ATPase, V0 domain1.83E-03
10GO:0005773: vacuole2.69E-03
11GO:0009506: plasmodesma2.97E-03
12GO:0031597: cytosolic proteasome complex3.46E-03
13GO:0030173: integral component of Golgi membrane3.46E-03
14GO:0005794: Golgi apparatus3.66E-03
15GO:0031595: nuclear proteasome complex4.08E-03
16GO:0030687: preribosome, large subunit precursor4.08E-03
17GO:0009514: glyoxysome5.42E-03
18GO:0005779: integral component of peroxisomal membrane5.42E-03
19GO:0000786: nucleosome6.71E-03
20GO:0008540: proteasome regulatory particle, base subcomplex6.90E-03
21GO:0005765: lysosomal membrane8.50E-03
22GO:0005789: endoplasmic reticulum membrane8.52E-03
23GO:0016602: CCAAT-binding factor complex1.02E-02
24GO:0030176: integral component of endoplasmic reticulum membrane1.21E-02
25GO:0010008: endosome membrane1.50E-02
26GO:0005774: vacuolar membrane1.61E-02
27GO:0005829: cytosol1.65E-02
28GO:0031410: cytoplasmic vesicle1.71E-02
29GO:0009505: plant-type cell wall1.78E-02
30GO:0005618: cell wall2.13E-02
31GO:0031965: nuclear membrane2.53E-02
32GO:0005802: trans-Golgi network2.65E-02
33GO:0009705: plant-type vacuole membrane3.02E-02
34GO:0005778: peroxisomal membrane3.18E-02
35GO:0000932: P-body3.45E-02
Gene type



Gene DE type