co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000188: inactivation of MAPK activity	0.00E+00
2	GO:0016236: macroautophagy	0.00E+00
3	GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly	0.00E+00
4	GO:0035420: MAPK cascade involved in innate immune response	0.00E+00
5	GO:0017126: nucleologenesis	0.00E+00
6	GO:0006903: vesicle targeting	0.00E+00
7	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
8	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
9	GO:0048312: intracellular distribution of mitochondria	0.00E+00
10	GO:0090352: regulation of nitrate assimilation	0.00E+00
11	GO:0010247: detection of phosphate ion	0.00E+00
12	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
13	GO:0048589: developmental growth	2.45E-07
14	GO:0006886: intracellular protein transport	9.21E-06
15	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.72E-05
16	GO:0055047: generative cell mitosis	5.34E-05
17	GO:0030242: pexophagy	5.34E-05
18	GO:0010113: negative regulation of systemic acquired resistance	5.34E-05
19	GO:0055071: manganese ion homeostasis	5.34E-05
20	GO:0034620: cellular response to unfolded protein	5.34E-05
21	GO:0009846: pollen germination	9.66E-05
22	GO:0051258: protein polymerization	1.30E-04
23	GO:2000071: regulation of defense response by callose deposition	1.30E-04
24	GO:0006517: protein deglycosylation	2.22E-04
25	GO:0006013: mannose metabolic process	2.22E-04
26	GO:0008360: regulation of cell shape	2.81E-04
27	GO:0009556: microsporogenesis	3.25E-04
28	GO:2000114: regulation of establishment of cell polarity	3.25E-04
29	GO:0048194: Golgi vesicle budding	3.25E-04
30	GO:1901000: regulation of response to salt stress	3.25E-04
31	GO:0043207: response to external biotic stimulus	3.25E-04
32	GO:0072583: clathrin-dependent endocytosis	3.25E-04
33	GO:0080119: ER body organization	3.25E-04
34	GO:0006612: protein targeting to membrane	3.25E-04
35	GO:0006893: Golgi to plasma membrane transport	3.25E-04
36	GO:0071323: cellular response to chitin	3.25E-04
37	GO:0045324: late endosome to vacuole transport	4.35E-04
38	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	4.35E-04
39	GO:0007029: endoplasmic reticulum organization	5.52E-04
40	GO:0010225: response to UV-C	5.52E-04
41	GO:0032876: negative regulation of DNA endoreduplication	5.52E-04
42	GO:0034052: positive regulation of plant-type hypersensitive response	5.52E-04
43	GO:0006888: ER to Golgi vesicle-mediated transport	5.86E-04
44	GO:0016049: cell growth	6.16E-04
45	GO:0006751: glutathione catabolic process	6.76E-04
46	GO:0048232: male gamete generation	6.76E-04
47	GO:0006828: manganese ion transport	6.76E-04
48	GO:0010337: regulation of salicylic acid metabolic process	6.76E-04
49	GO:0033962: cytoplasmic mRNA processing body assembly	8.05E-04
50	GO:0017148: negative regulation of translation	8.05E-04
51	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.40E-04
52	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	9.40E-04
53	GO:2000070: regulation of response to water deprivation	1.08E-03
54	GO:0052543: callose deposition in cell wall	1.08E-03
55	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.08E-03
56	GO:0006491: N-glycan processing	1.08E-03
57	GO:1900150: regulation of defense response to fungus	1.08E-03
58	GO:0048766: root hair initiation	1.08E-03
59	GO:0006875: cellular metal ion homeostasis	1.08E-03
60	GO:0006605: protein targeting	1.08E-03
61	GO:0009699: phenylpropanoid biosynthetic process	1.23E-03
62	GO:0060321: acceptance of pollen	1.23E-03
63	GO:0010224: response to UV-B	1.42E-03
64	GO:0006397: mRNA processing	1.43E-03
65	GO:0048364: root development	1.43E-03
66	GO:0010018: far-red light signaling pathway	1.54E-03
67	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.54E-03
68	GO:0008202: steroid metabolic process	1.54E-03
69	GO:0048367: shoot system development	1.66E-03
70	GO:0006298: mismatch repair	1.71E-03
71	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.71E-03
72	GO:0006816: calcium ion transport	1.88E-03
73	GO:0000266: mitochondrial fission	2.06E-03
74	GO:0008361: regulation of cell size	2.06E-03
75	GO:0016925: protein sumoylation	2.06E-03
76	GO:0000398: mRNA splicing, via spliceosome	2.22E-03
77	GO:0050826: response to freezing	2.25E-03
78	GO:0034605: cellular response to heat	2.43E-03
79	GO:0007030: Golgi organization	2.63E-03
80	GO:0080188: RNA-directed DNA methylation	2.63E-03
81	GO:0009555: pollen development	2.78E-03
82	GO:0042753: positive regulation of circadian rhythm	2.83E-03
83	GO:0006487: protein N-linked glycosylation	3.03E-03
84	GO:0006289: nucleotide-excision repair	3.03E-03
85	GO:0051302: regulation of cell division	3.24E-03
86	GO:0016575: histone deacetylation	3.24E-03
87	GO:0080092: regulation of pollen tube growth	3.68E-03
88	GO:0070417: cellular response to cold	4.36E-03
89	GO:0006623: protein targeting to vacuole	5.34E-03
90	GO:0010183: pollen tube guidance	5.34E-03
91	GO:0009639: response to red or far red light	6.39E-03
92	GO:0006914: autophagy	6.39E-03
93	GO:0010286: heat acclimation	6.66E-03
94	GO:0006904: vesicle docking involved in exocytosis	6.66E-03
95	GO:0046777: protein autophosphorylation	6.74E-03
96	GO:0051607: defense response to virus	6.94E-03
97	GO:0016579: protein deubiquitination	6.94E-03
98	GO:0009816: defense response to bacterium, incompatible interaction	7.50E-03
99	GO:0006869: lipid transport	8.28E-03
100	GO:0008219: cell death	8.68E-03
101	GO:0048481: plant ovule development	8.68E-03
102	GO:0015031: protein transport	9.22E-03
103	GO:0006499: N-terminal protein myristoylation	9.30E-03
104	GO:0009910: negative regulation of flower development	9.61E-03
105	GO:0006887: exocytosis	1.16E-02
106	GO:0006897: endocytosis	1.16E-02
107	GO:0008283: cell proliferation	1.23E-02
108	GO:0000209: protein polyubiquitination	1.26E-02
109	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.40E-02
110	GO:0042538: hyperosmotic salinity response	1.44E-02
111	GO:0009908: flower development	1.50E-02
112	GO:0009809: lignin biosynthetic process	1.51E-02
113	GO:0009585: red, far-red light phototransduction	1.51E-02
114	GO:0006417: regulation of translation	1.63E-02
115	GO:0006096: glycolytic process	1.70E-02
116	GO:0009626: plant-type hypersensitive response	1.78E-02
117	GO:0009553: embryo sac development	1.90E-02
118	GO:0009845: seed germination	2.41E-02
119	GO:0009790: embryo development	2.55E-02
120	GO:0016036: cellular response to phosphate starvation	2.73E-02
121	GO:0040008: regulation of growth	2.77E-02
122	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.11E-02
123	GO:0006470: protein dephosphorylation	3.15E-02
124	GO:0008380: RNA splicing	3.25E-02
125	GO:0009860: pollen tube growth	4.12E-02
126	GO:0048366: leaf development	4.39E-02
127	GO:0010200: response to chitin	4.67E-02
128	GO:0016192: vesicle-mediated transport	4.73E-02
129	GO:0006810: transport	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0015410: manganese-transporting ATPase activity	0.00E+00
2	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
3	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
4	GO:0005548: phospholipid transporter activity	0.00E+00
5	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
6	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
7	GO:0030276: clathrin binding	7.81E-06
8	GO:0003729: mRNA binding	8.32E-06
9	GO:0004012: phospholipid-translocating ATPase activity	1.16E-05
10	GO:0003843: 1,3-beta-D-glucan synthase activity	2.72E-05
11	GO:0005515: protein binding	7.34E-05
12	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.17E-05
13	GO:0005198: structural molecule activity	8.19E-05
14	GO:0005047: signal recognition particle binding	2.22E-04
15	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	3.25E-04
16	GO:0019789: SUMO transferase activity	3.25E-04
17	GO:0001106: RNA polymerase II transcription corepressor activity	4.35E-04
18	GO:0004709: MAP kinase kinase kinase activity	6.76E-04
19	GO:0004559: alpha-mannosidase activity	8.05E-04
20	GO:0008143: poly(A) binding	9.40E-04
21	GO:0008142: oxysterol binding	1.23E-03
22	GO:0004386: helicase activity	2.10E-03
23	GO:0005388: calcium-transporting ATPase activity	2.25E-03
24	GO:0004725: protein tyrosine phosphatase activity	2.83E-03
25	GO:0004407: histone deacetylase activity	3.03E-03
26	GO:0043130: ubiquitin binding	3.03E-03
27	GO:0008270: zinc ion binding	3.16E-03
28	GO:0051087: chaperone binding	3.24E-03
29	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.46E-03
30	GO:0005516: calmodulin binding	4.67E-03
31	GO:0000287: magnesium ion binding	4.99E-03
32	GO:0004843: thiol-dependent ubiquitin-specific protease activity	5.60E-03
33	GO:0003684: damaged DNA binding	6.39E-03
34	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	6.66E-03
35	GO:0003924: GTPase activity	9.31E-03
36	GO:0003697: single-stranded DNA binding	1.02E-02
37	GO:0035091: phosphatidylinositol binding	1.30E-02
38	GO:0015171: amino acid transmembrane transporter activity	1.63E-02
39	GO:0016874: ligase activity	1.86E-02
40	GO:0016746: transferase activity, transferring acyl groups	1.98E-02
41	GO:0008026: ATP-dependent helicase activity	2.02E-02
42	GO:0005524: ATP binding	2.17E-02
43	GO:0005525: GTP binding	2.73E-02
44	GO:0008017: microtubule binding	2.96E-02
45	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.40E-02
46	GO:0005215: transporter activity	3.71E-02
47	GO:0004497: monooxygenase activity	4.56E-02
48	GO:0061630: ubiquitin protein ligase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0071561: nucleus-vacuole junction	0.00E+00
4	GO:0071942: XPC complex	0.00E+00
5	GO:0000139: Golgi membrane	6.15E-06
6	GO:0030127: COPII vesicle coat	8.00E-06
7	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.59E-05
8	GO:0000148: 1,3-beta-D-glucan synthase complex	2.72E-05
9	GO:0009506: plasmodesma	3.85E-05
10	GO:0005829: cytosol	4.61E-05
11	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	5.34E-05
12	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	5.34E-05
13	GO:0045334: clathrin-coated endocytic vesicle	5.34E-05
14	GO:0045254: pyruvate dehydrogenase complex	1.30E-04
15	GO:0005681: spliceosomal complex	1.37E-04
16	GO:0030130: clathrin coat of trans-Golgi network vesicle	2.22E-04
17	GO:0030132: clathrin coat of coated pit	2.22E-04
18	GO:0005794: Golgi apparatus	4.32E-04
19	GO:0030126: COPI vesicle coat	5.52E-04
20	GO:0005886: plasma membrane	6.32E-04
21	GO:0000118: histone deacetylase complex	8.05E-04
22	GO:0005802: trans-Golgi network	9.20E-04
23	GO:0031902: late endosome membrane	9.55E-04
24	GO:0005768: endosome	1.11E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.23E-03
26	GO:0010494: cytoplasmic stress granule	1.38E-03
27	GO:0015030: Cajal body	1.54E-03
28	GO:0019013: viral nucleocapsid	2.25E-03
29	GO:0005789: endoplasmic reticulum membrane	2.48E-03
30	GO:0030136: clathrin-coated vesicle	4.36E-03
31	GO:0005770: late endosome	4.84E-03
32	GO:0009504: cell plate	5.34E-03
33	GO:0000145: exocyst	5.86E-03
34	GO:0000785: chromatin	5.86E-03
35	GO:0000932: P-body	7.22E-03
36	GO:0030529: intracellular ribonucleoprotein complex	7.22E-03
37	GO:0005643: nuclear pore	8.68E-03
38	GO:0005634: nucleus	1.14E-02
39	GO:0005856: cytoskeleton	1.33E-02
40	GO:0016607: nuclear speck	1.74E-02
41	GO:0012505: endomembrane system	1.90E-02
42	GO:0009524: phragmoplast	2.37E-02
43	GO:0005783: endoplasmic reticulum	2.45E-02
44	GO:0005759: mitochondrial matrix	2.68E-02
45	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.18E-02
46	GO:0005874: microtubule	4.45E-02