Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006182: cGMP biosynthetic process0.00E+00
2GO:0072722: response to amitrole0.00E+00
3GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
4GO:0015690: aluminum cation transport0.00E+00
5GO:0009617: response to bacterium1.97E-09
6GO:0042742: defense response to bacterium3.64E-07
7GO:0010120: camalexin biosynthetic process6.05E-07
8GO:0071456: cellular response to hypoxia1.03E-06
9GO:0006099: tricarboxylic acid cycle3.86E-06
10GO:0051707: response to other organism7.23E-06
11GO:0000162: tryptophan biosynthetic process1.22E-05
12GO:0055114: oxidation-reduction process1.89E-05
13GO:0006102: isocitrate metabolic process2.30E-05
14GO:0010150: leaf senescence2.39E-05
15GO:0009407: toxin catabolic process3.49E-05
16GO:0010112: regulation of systemic acquired resistance4.43E-05
17GO:0046686: response to cadmium ion9.08E-05
18GO:0009636: response to toxic substance1.10E-04
19GO:0009697: salicylic acid biosynthetic process1.87E-04
20GO:0006952: defense response1.96E-04
21GO:0009627: systemic acquired resistance2.21E-04
22GO:0002238: response to molecule of fungal origin2.65E-04
23GO:0006468: protein phosphorylation3.27E-04
24GO:0032491: detection of molecule of fungal origin4.62E-04
25GO:0010230: alternative respiration4.62E-04
26GO:0006643: membrane lipid metabolic process4.62E-04
27GO:0042759: long-chain fatty acid biosynthetic process4.62E-04
28GO:0080120: CAAX-box protein maturation4.62E-04
29GO:0034975: protein folding in endoplasmic reticulum4.62E-04
30GO:0071586: CAAX-box protein processing4.62E-04
31GO:1990641: response to iron ion starvation4.62E-04
32GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.62E-04
33GO:0010726: positive regulation of hydrogen peroxide metabolic process4.62E-04
34GO:0055081: anion homeostasis4.62E-04
35GO:0009700: indole phytoalexin biosynthetic process4.62E-04
36GO:1901183: positive regulation of camalexin biosynthetic process4.62E-04
37GO:0030091: protein repair5.71E-04
38GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.71E-04
39GO:0010204: defense response signaling pathway, resistance gene-independent6.96E-04
40GO:0009851: auxin biosynthetic process8.03E-04
41GO:0090333: regulation of stomatal closure8.33E-04
42GO:0000302: response to reactive oxygen species8.75E-04
43GO:0019441: tryptophan catabolic process to kynurenine9.96E-04
44GO:0060919: auxin influx9.96E-04
45GO:0015914: phospholipid transport9.96E-04
46GO:0010155: regulation of proton transport9.96E-04
47GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.96E-04
48GO:0009866: induced systemic resistance, ethylene mediated signaling pathway9.96E-04
49GO:0019374: galactolipid metabolic process9.96E-04
50GO:0006101: citrate metabolic process9.96E-04
51GO:0002240: response to molecule of oomycetes origin9.96E-04
52GO:0044419: interspecies interaction between organisms9.96E-04
53GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine9.96E-04
54GO:0031349: positive regulation of defense response9.96E-04
55GO:0010252: auxin homeostasis1.11E-03
56GO:0009688: abscisic acid biosynthetic process1.14E-03
57GO:0043069: negative regulation of programmed cell death1.14E-03
58GO:0006032: chitin catabolic process1.14E-03
59GO:0009651: response to salt stress1.25E-03
60GO:0009682: induced systemic resistance1.32E-03
61GO:0009816: defense response to bacterium, incompatible interaction1.49E-03
62GO:0002230: positive regulation of defense response to virus by host1.62E-03
63GO:0051176: positive regulation of sulfur metabolic process1.62E-03
64GO:0010272: response to silver ion1.62E-03
65GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.62E-03
66GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening1.62E-03
67GO:0080055: low-affinity nitrate transport1.62E-03
68GO:0002237: response to molecule of bacterial origin1.93E-03
69GO:0009817: defense response to fungus, incompatible interaction1.95E-03
70GO:0050832: defense response to fungus2.14E-03
71GO:0070588: calcium ion transmembrane transport2.17E-03
72GO:1902290: positive regulation of defense response to oomycetes2.35E-03
73GO:0046513: ceramide biosynthetic process2.35E-03
74GO:0010116: positive regulation of abscisic acid biosynthetic process2.35E-03
75GO:0019438: aromatic compound biosynthetic process2.35E-03
76GO:0048194: Golgi vesicle budding2.35E-03
77GO:0034976: response to endoplasmic reticulum stress2.42E-03
78GO:0080147: root hair cell development2.68E-03
79GO:0010200: response to chitin2.90E-03
80GO:0080142: regulation of salicylic acid biosynthetic process3.16E-03
81GO:1901141: regulation of lignin biosynthetic process3.16E-03
82GO:1900864: mitochondrial RNA modification3.16E-03
83GO:0010107: potassium ion import3.16E-03
84GO:0042273: ribosomal large subunit biogenesis3.16E-03
85GO:0010600: regulation of auxin biosynthetic process3.16E-03
86GO:0016998: cell wall macromolecule catabolic process3.25E-03
87GO:0006097: glyoxylate cycle4.05E-03
88GO:0000304: response to singlet oxygen4.05E-03
89GO:0034052: positive regulation of plant-type hypersensitive response4.05E-03
90GO:0018279: protein N-linked glycosylation via asparagine4.05E-03
91GO:0006564: L-serine biosynthetic process4.05E-03
92GO:0032259: methylation5.02E-03
93GO:0006561: proline biosynthetic process5.02E-03
94GO:0010942: positive regulation of cell death5.02E-03
95GO:0006796: phosphate-containing compound metabolic process5.02E-03
96GO:0010315: auxin efflux5.02E-03
97GO:1900425: negative regulation of defense response to bacterium5.02E-03
98GO:0016042: lipid catabolic process5.15E-03
99GO:0009737: response to abscisic acid5.43E-03
100GO:0048544: recognition of pollen5.75E-03
101GO:0006694: steroid biosynthetic process6.06E-03
102GO:0009414: response to water deprivation6.26E-03
103GO:0002229: defense response to oomycetes6.61E-03
104GO:0006979: response to oxidative stress6.70E-03
105GO:0009630: gravitropism7.06E-03
106GO:1902074: response to salt7.16E-03
107GO:0010044: response to aluminum ion7.16E-03
108GO:0046470: phosphatidylcholine metabolic process7.16E-03
109GO:0009395: phospholipid catabolic process7.16E-03
110GO:0043090: amino acid import7.16E-03
111GO:1900056: negative regulation of leaf senescence7.16E-03
112GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway7.16E-03
113GO:1900057: positive regulation of leaf senescence7.16E-03
114GO:0009626: plant-type hypersensitive response7.19E-03
115GO:0009620: response to fungus7.48E-03
116GO:0006644: phospholipid metabolic process8.33E-03
117GO:0009787: regulation of abscisic acid-activated signaling pathway8.33E-03
118GO:0009819: drought recovery8.33E-03
119GO:0043562: cellular response to nitrogen levels9.57E-03
120GO:0009808: lignin metabolic process9.57E-03
121GO:0009699: phenylpropanoid biosynthetic process9.57E-03
122GO:0006075: (1->3)-beta-D-glucan biosynthetic process9.57E-03
123GO:0080167: response to karrikin1.05E-02
124GO:0034765: regulation of ion transmembrane transport1.09E-02
125GO:1900426: positive regulation of defense response to bacterium1.22E-02
126GO:0010205: photoinhibition1.22E-02
127GO:0043067: regulation of programmed cell death1.22E-02
128GO:1900865: chloroplast RNA modification1.22E-02
129GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.22E-02
130GO:0008219: cell death1.25E-02
131GO:0009735: response to cytokinin1.26E-02
132GO:0048767: root hair elongation1.32E-02
133GO:0010162: seed dormancy process1.37E-02
134GO:0009870: defense response signaling pathway, resistance gene-dependent1.37E-02
135GO:0045454: cell redox homeostasis1.38E-02
136GO:0010043: response to zinc ion1.45E-02
137GO:0007568: aging1.45E-02
138GO:0000272: polysaccharide catabolic process1.51E-02
139GO:0030148: sphingolipid biosynthetic process1.51E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.51E-02
141GO:0052544: defense response by callose deposition in cell wall1.51E-02
142GO:0010582: floral meristem determinacy1.67E-02
143GO:0015706: nitrate transport1.67E-02
144GO:0002213: defense response to insect1.67E-02
145GO:0055046: microgametogenesis1.82E-02
146GO:0009718: anthocyanin-containing compound biosynthetic process1.82E-02
147GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.82E-02
148GO:0010540: basipetal auxin transport1.99E-02
149GO:0010143: cutin biosynthetic process1.99E-02
150GO:0006541: glutamine metabolic process1.99E-02
151GO:0007166: cell surface receptor signaling pathway2.00E-02
152GO:0010053: root epidermal cell differentiation2.16E-02
153GO:0010025: wax biosynthetic process2.33E-02
154GO:2000377: regulation of reactive oxygen species metabolic process2.51E-02
155GO:0005992: trehalose biosynthetic process2.51E-02
156GO:0006487: protein N-linked glycosylation2.51E-02
157GO:0009846: pollen germination2.59E-02
158GO:0006813: potassium ion transport2.78E-02
159GO:0010431: seed maturation2.88E-02
160GO:0006508: proteolysis3.06E-02
161GO:0031348: negative regulation of defense response3.07E-02
162GO:0009814: defense response, incompatible interaction3.07E-02
163GO:0016226: iron-sulfur cluster assembly3.07E-02
164GO:0009625: response to insect3.27E-02
165GO:0010227: floral organ abscission3.27E-02
166GO:0006012: galactose metabolic process3.27E-02
167GO:0010584: pollen exine formation3.47E-02
168GO:0009561: megagametogenesis3.47E-02
169GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.67E-02
170GO:0070417: cellular response to cold3.67E-02
171GO:0042391: regulation of membrane potential3.88E-02
172GO:0010197: polar nucleus fusion4.09E-02
173GO:0008360: regulation of cell shape4.09E-02
174GO:0006885: regulation of pH4.09E-02
175GO:0010154: fruit development4.09E-02
176GO:0046777: protein autophosphorylation4.15E-02
177GO:0042752: regulation of circadian rhythm4.31E-02
178GO:0009646: response to absence of light4.31E-02
179GO:0010193: response to ozone4.75E-02
RankGO TermAdjusted P value
1GO:0035885: exochitinase activity0.00E+00
2GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
3GO:0052642: lysophosphatidic acid phosphatase activity0.00E+00
4GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
5GO:0008843: endochitinase activity0.00E+00
6GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
7GO:0010279: indole-3-acetic acid amido synthetase activity1.35E-06
8GO:0004674: protein serine/threonine kinase activity2.49E-06
9GO:0004364: glutathione transferase activity6.42E-06
10GO:0050660: flavin adenine dinucleotide binding1.94E-05
11GO:0004049: anthranilate synthase activity3.23E-05
12GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.90E-05
13GO:0004449: isocitrate dehydrogenase (NAD+) activity6.96E-05
14GO:0016301: kinase activity7.92E-05
15GO:0005524: ATP binding9.25E-05
16GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.87E-04
17GO:0005507: copper ion binding2.99E-04
18GO:0004656: procollagen-proline 4-dioxygenase activity3.55E-04
19GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.55E-04
20GO:0004012: phospholipid-translocating ATPase activity3.55E-04
21GO:0043295: glutathione binding4.58E-04
22GO:2001147: camalexin binding4.62E-04
23GO:0010285: L,L-diaminopimelate aminotransferase activity4.62E-04
24GO:0031957: very long-chain fatty acid-CoA ligase activity4.62E-04
25GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.62E-04
26GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity4.62E-04
27GO:2001227: quercitrin binding4.62E-04
28GO:0004425: indole-3-glycerol-phosphate synthase activity4.62E-04
29GO:0033984: indole-3-glycerol-phosphate lyase activity4.62E-04
30GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity4.62E-04
31GO:0009055: electron carrier activity4.63E-04
32GO:0003756: protein disulfide isomerase activity4.96E-04
33GO:0048531: beta-1,3-galactosyltransferase activity9.96E-04
34GO:0004776: succinate-CoA ligase (GDP-forming) activity9.96E-04
35GO:0050291: sphingosine N-acyltransferase activity9.96E-04
36GO:0003994: aconitate hydratase activity9.96E-04
37GO:0045140: inositol phosphoceramide synthase activity9.96E-04
38GO:0004775: succinate-CoA ligase (ADP-forming) activity9.96E-04
39GO:0004061: arylformamidase activity9.96E-04
40GO:0008171: O-methyltransferase activity1.14E-03
41GO:0008559: xenobiotic-transporting ATPase activity1.32E-03
42GO:0004383: guanylate cyclase activity1.62E-03
43GO:0016805: dipeptidase activity1.62E-03
44GO:0080054: low-affinity nitrate transmembrane transporter activity1.62E-03
45GO:0004324: ferredoxin-NADP+ reductase activity1.62E-03
46GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.62E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.62E-03
48GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.71E-03
49GO:0005388: calcium-transporting ATPase activity1.71E-03
50GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.83E-03
51GO:0004190: aspartic-type endopeptidase activity2.17E-03
52GO:0008061: chitin binding2.17E-03
53GO:0035529: NADH pyrophosphatase activity2.35E-03
54GO:0050897: cobalt ion binding2.35E-03
55GO:0016656: monodehydroascorbate reductase (NADH) activity2.35E-03
56GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.64E-03
57GO:0030246: carbohydrate binding2.71E-03
58GO:0004834: tryptophan synthase activity3.16E-03
59GO:0010328: auxin influx transmembrane transporter activity3.16E-03
60GO:0004031: aldehyde oxidase activity3.16E-03
61GO:0050302: indole-3-acetaldehyde oxidase activity3.16E-03
62GO:0005516: calmodulin binding3.46E-03
63GO:0005496: steroid binding4.05E-03
64GO:0047631: ADP-ribose diphosphatase activity4.05E-03
65GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity4.05E-03
66GO:0045431: flavonol synthase activity4.05E-03
67GO:0005546: phosphatidylinositol-4,5-bisphosphate binding4.05E-03
68GO:0030976: thiamine pyrophosphate binding5.02E-03
69GO:0000210: NAD+ diphosphatase activity5.02E-03
70GO:0004029: aldehyde dehydrogenase (NAD) activity5.02E-03
71GO:0008113: peptide-methionine (S)-S-oxide reductase activity6.06E-03
72GO:0005242: inward rectifier potassium channel activity6.06E-03
73GO:0051920: peroxiredoxin activity6.06E-03
74GO:0102391: decanoate--CoA ligase activity6.06E-03
75GO:0004620: phospholipase activity7.16E-03
76GO:0004467: long-chain fatty acid-CoA ligase activity7.16E-03
77GO:0004143: diacylglycerol kinase activity7.16E-03
78GO:0008235: metalloexopeptidase activity7.16E-03
79GO:0102425: myricetin 3-O-glucosyltransferase activity7.16E-03
80GO:0102360: daphnetin 3-O-glucosyltransferase activity7.16E-03
81GO:0008320: protein transmembrane transporter activity7.16E-03
82GO:0000287: magnesium ion binding7.36E-03
83GO:0004033: aldo-keto reductase (NADP) activity8.33E-03
84GO:0016209: antioxidant activity8.33E-03
85GO:0004034: aldose 1-epimerase activity8.33E-03
86GO:0047893: flavonol 3-O-glucosyltransferase activity8.33E-03
87GO:0016746: transferase activity, transferring acyl groups8.72E-03
88GO:0003843: 1,3-beta-D-glucan synthase activity9.57E-03
89GO:0004630: phospholipase D activity9.57E-03
90GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.57E-03
91GO:0030247: polysaccharide binding1.13E-02
92GO:0016491: oxidoreductase activity1.19E-02
93GO:0047617: acyl-CoA hydrolase activity1.22E-02
94GO:0030955: potassium ion binding1.22E-02
95GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.22E-02
96GO:0004743: pyruvate kinase activity1.22E-02
97GO:0045309: protein phosphorylated amino acid binding1.22E-02
98GO:0004568: chitinase activity1.37E-02
99GO:0008047: enzyme activator activity1.37E-02
100GO:0004713: protein tyrosine kinase activity1.37E-02
101GO:0030145: manganese ion binding1.45E-02
102GO:0001054: RNA polymerase I activity1.51E-02
103GO:0004177: aminopeptidase activity1.51E-02
104GO:0005543: phospholipid binding1.51E-02
105GO:0019904: protein domain specific binding1.51E-02
106GO:0004129: cytochrome-c oxidase activity1.51E-02
107GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.55E-02
108GO:0005506: iron ion binding1.77E-02
109GO:0000175: 3'-5'-exoribonuclease activity1.82E-02
110GO:0004022: alcohol dehydrogenase (NAD) activity1.82E-02
111GO:0010329: auxin efflux transmembrane transporter activity1.82E-02
112GO:0031624: ubiquitin conjugating enzyme binding1.99E-02
113GO:0004175: endopeptidase activity1.99E-02
114GO:0004535: poly(A)-specific ribonuclease activity1.99E-02
115GO:0004867: serine-type endopeptidase inhibitor activity2.16E-02
116GO:0015293: symporter activity2.32E-02
117GO:0051287: NAD binding2.50E-02
118GO:0031418: L-ascorbic acid binding2.51E-02
119GO:0003954: NADH dehydrogenase activity2.51E-02
120GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.78E-02
121GO:0008168: methyltransferase activity2.79E-02
122GO:0008408: 3'-5' exonuclease activity2.88E-02
123GO:0016298: lipase activity2.88E-02
124GO:0035251: UDP-glucosyltransferase activity2.88E-02
125GO:0004540: ribonuclease activity2.88E-02
126GO:0045735: nutrient reservoir activity3.29E-02
127GO:0004499: N,N-dimethylaniline monooxygenase activity3.47E-02
128GO:0005451: monovalent cation:proton antiporter activity3.88E-02
129GO:0030551: cyclic nucleotide binding3.88E-02
130GO:0061630: ubiquitin protein ligase activity4.06E-02
131GO:0015035: protein disulfide oxidoreductase activity4.07E-02
132GO:0003713: transcription coactivator activity4.09E-02
133GO:0001085: RNA polymerase II transcription factor binding4.09E-02
134GO:0016853: isomerase activity4.31E-02
135GO:0015299: solute:proton antiporter activity4.31E-02
136GO:0010181: FMN binding4.31E-02
137GO:0052689: carboxylic ester hydrolase activity4.32E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005886: plasma membrane8.47E-10
3GO:0005783: endoplasmic reticulum2.04E-08
4GO:0016021: integral component of membrane1.43E-05
5GO:0005789: endoplasmic reticulum membrane8.40E-05
6GO:0008250: oligosaccharyltransferase complex1.87E-04
7GO:0005829: cytosol4.18E-04
8GO:0045252: oxoglutarate dehydrogenase complex4.62E-04
9GO:0030014: CCR4-NOT complex4.62E-04
10GO:0005950: anthranilate synthase complex9.96E-04
11GO:0031304: intrinsic component of mitochondrial inner membrane9.96E-04
12GO:0005901: caveola9.96E-04
13GO:0030134: ER to Golgi transport vesicle9.96E-04
14GO:0016020: membrane1.40E-03
15GO:0005794: Golgi apparatus2.28E-03
16GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane3.16E-03
17GO:0030660: Golgi-associated vesicle membrane3.16E-03
18GO:0005746: mitochondrial respiratory chain4.05E-03
19GO:0030687: preribosome, large subunit precursor7.16E-03
20GO:0034399: nuclear periphery8.33E-03
21GO:0045273: respiratory chain complex II8.33E-03
22GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)8.33E-03
23GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane8.33E-03
24GO:0000148: 1,3-beta-D-glucan synthase complex9.57E-03
25GO:0000326: protein storage vacuole9.57E-03
26GO:0005788: endoplasmic reticulum lumen1.01E-02
27GO:0009505: plant-type cell wall1.07E-02
28GO:0005736: DNA-directed RNA polymerase I complex1.09E-02
29GO:0000325: plant-type vacuole1.45E-02
30GO:0005765: lysosomal membrane1.51E-02
31GO:0005774: vacuolar membrane1.81E-02
32GO:0009506: plasmodesma2.06E-02
33GO:0030176: integral component of endoplasmic reticulum membrane2.16E-02
34GO:0046658: anchored component of plasma membrane2.41E-02
35GO:0005773: vacuole2.41E-02
36GO:0005618: cell wall2.50E-02
37GO:0005747: mitochondrial respiratory chain complex I3.39E-02
38GO:0005770: late endosome4.09E-02
39GO:0048046: apoplast4.40E-02
40GO:0009504: cell plate4.53E-02
Gene type



Gene DE type