co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0009913: epidermal cell differentiation	8.76E-06
4	GO:1901259: chloroplast rRNA processing	1.27E-05
5	GO:0034337: RNA folding	5.64E-05
6	GO:0090391: granum assembly	2.34E-04
7	GO:0010239: chloroplast mRNA processing	3.41E-04
8	GO:0048825: cotyledon development	3.49E-04
9	GO:0010109: regulation of photosynthesis	4.56E-04
10	GO:0010027: thylakoid membrane organization	5.36E-04
11	GO:0048497: maintenance of floral organ identity	5.78E-04
12	GO:0015995: chlorophyll biosynthetic process	6.28E-04
13	GO:0009959: negative gravitropism	7.07E-04
14	GO:0010444: guard mother cell differentiation	9.85E-04
15	GO:0010196: nonphotochemical quenching	9.85E-04
16	GO:0015979: photosynthesis	1.08E-03
17	GO:0006605: protein targeting	1.13E-03
18	GO:0010492: maintenance of shoot apical meristem identity	1.13E-03
19	GO:0048564: photosystem I assembly	1.13E-03
20	GO:0045292: mRNA cis splicing, via spliceosome	1.13E-03
21	GO:0006353: DNA-templated transcription, termination	1.13E-03
22	GO:0032544: plastid translation	1.29E-03
23	GO:0000373: Group II intron splicing	1.45E-03
24	GO:0048507: meristem development	1.45E-03
25	GO:0006364: rRNA processing	1.47E-03
26	GO:0009638: phototropism	1.62E-03
27	GO:0046856: phosphatidylinositol dephosphorylation	1.97E-03
28	GO:0050826: response to freezing	2.36E-03
29	GO:0009785: blue light signaling pathway	2.36E-03
30	GO:0010207: photosystem II assembly	2.56E-03
31	GO:0090351: seedling development	2.76E-03
32	GO:0009845: seed germination	2.79E-03
33	GO:0051017: actin filament bundle assembly	3.18E-03
34	GO:0009451: RNA modification	3.63E-03
35	GO:0042335: cuticle development	4.83E-03
36	GO:0009646: response to absence of light	5.35E-03
37	GO:0000302: response to reactive oxygen species	5.88E-03
38	GO:0016032: viral process	6.15E-03
39	GO:0010090: trichome morphogenesis	6.43E-03
40	GO:0009639: response to red or far red light	6.71E-03
41	GO:0008152: metabolic process	1.10E-02
42	GO:0034599: cellular response to oxidative stress	1.11E-02
43	GO:0006855: drug transmembrane transport	1.44E-02
44	GO:0009735: response to cytokinin	1.63E-02
45	GO:0051603: proteolysis involved in cellular protein catabolic process	1.63E-02
46	GO:0006857: oligopeptide transport	1.67E-02
47	GO:0009416: response to light stimulus	1.78E-02
48	GO:0006396: RNA processing	2.09E-02
49	GO:0016310: phosphorylation	2.32E-02
50	GO:0042744: hydrogen peroxide catabolic process	2.63E-02
51	GO:0007623: circadian rhythm	3.02E-02
52	GO:0007166: cell surface receptor signaling pathway	3.32E-02
53	GO:0008380: RNA splicing	3.42E-02
54	GO:0009658: chloroplast organization	4.12E-02
55	GO:0042254: ribosome biogenesis	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0016851: magnesium chelatase activity	1.75E-06
4	GO:0004856: xylulokinase activity	5.64E-05
5	GO:0005528: FK506 binding	1.46E-04
6	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.34E-04
7	GO:0019843: rRNA binding	2.66E-04
8	GO:0004445: inositol-polyphosphate 5-phosphatase activity	3.41E-04
9	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.78E-04
10	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	7.07E-04
11	GO:0004130: cytochrome-c peroxidase activity	7.07E-04
12	GO:0003723: RNA binding	8.30E-04
13	GO:0016787: hydrolase activity	1.04E-03
14	GO:0004525: ribonuclease III activity	1.13E-03
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.28E-03
16	GO:0047372: acylglycerol lipase activity	1.97E-03
17	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.16E-03
18	GO:0010181: FMN binding	5.35E-03
19	GO:0051015: actin filament binding	6.43E-03
20	GO:0016597: amino acid binding	7.29E-03
21	GO:0004871: signal transducer activity	8.50E-03
22	GO:0003746: translation elongation factor activity	1.08E-02
23	GO:0004519: endonuclease activity	1.09E-02
24	GO:0004185: serine-type carboxypeptidase activity	1.29E-02
25	GO:0043621: protein self-association	1.36E-02
26	GO:0008289: lipid binding	1.40E-02
27	GO:0016887: ATPase activity	1.55E-02
28	GO:0003777: microtubule motor activity	1.71E-02
29	GO:0016874: ligase activity	1.96E-02
30	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.87E-02
31	GO:0005525: GTP binding	2.93E-02
32	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.58E-02
33	GO:0008168: methyltransferase activity	4.01E-02
34	GO:0004601: peroxidase activity	4.12E-02
35	GO:0016788: hydrolase activity, acting on ester bonds	4.17E-02
36	GO:0016491: oxidoreductase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	1.33E-13
3	GO:0009534: chloroplast thylakoid	1.02E-09
4	GO:0009535: chloroplast thylakoid membrane	3.25E-07
5	GO:0009570: chloroplast stroma	3.34E-07
6	GO:0010007: magnesium chelatase complex	7.23E-07
7	GO:0009543: chloroplast thylakoid lumen	1.59E-05
8	GO:0009515: granal stacked thylakoid	5.64E-05
9	GO:0031977: thylakoid lumen	6.78E-05
10	GO:0009941: chloroplast envelope	2.62E-04
11	GO:0042646: plastid nucleoid	3.41E-04
12	GO:0009579: thylakoid	6.63E-04
13	GO:0016363: nuclear matrix	8.44E-04
14	GO:0042644: chloroplast nucleoid	1.45E-03
15	GO:0032040: small-subunit processome	2.16E-03
16	GO:0009508: plastid chromosome	2.36E-03
17	GO:0015629: actin cytoskeleton	4.10E-03
18	GO:0009522: photosystem I	5.35E-03
19	GO:0009295: nucleoid	7.00E-03
20	GO:0030529: intracellular ribonucleoprotein complex	7.59E-03
21	GO:0043231: intracellular membrane-bounded organelle	1.10E-02
22	GO:0005856: cytoskeleton	1.40E-02
23	GO:0009706: chloroplast inner membrane	2.04E-02
24	GO:0009705: plant-type vacuole membrane	3.02E-02
25	GO:0009536: plastid	4.41E-02