co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50685

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0009773: photosynthetic electron transport in photosystem I	1.74E-09
3	GO:0015979: photosynthesis	4.10E-07
4	GO:0010196: nonphotochemical quenching	1.82E-06
5	GO:0090391: granum assembly	6.80E-06
6	GO:0009913: epidermal cell differentiation	6.86E-05
7	GO:0071588: hydrogen peroxide mediated signaling pathway	1.98E-04
8	GO:1902025: nitrate import	1.98E-04
9	GO:0080051: cutin transport	1.98E-04
10	GO:0090548: response to nitrate starvation	1.98E-04
11	GO:0010027: thylakoid membrane organization	2.88E-04
12	GO:0010205: photoinhibition	2.92E-04
13	GO:0015995: chlorophyll biosynthetic process	3.58E-04
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.43E-04
15	GO:0015908: fatty acid transport	4.43E-04
16	GO:0035304: regulation of protein dephosphorylation	4.43E-04
17	GO:0043255: regulation of carbohydrate biosynthetic process	4.43E-04
18	GO:0010115: regulation of abscisic acid biosynthetic process	4.43E-04
19	GO:0001736: establishment of planar polarity	4.43E-04
20	GO:0016024: CDP-diacylglycerol biosynthetic process	4.56E-04
21	GO:0010207: photosystem II assembly	5.82E-04
22	GO:0010167: response to nitrate	6.52E-04
23	GO:0015675: nickel cation transport	7.22E-04
24	GO:0015714: phosphoenolpyruvate transport	7.22E-04
25	GO:0071484: cellular response to light intensity	1.03E-03
26	GO:0010239: chloroplast mRNA processing	1.03E-03
27	GO:1901332: negative regulation of lateral root development	1.03E-03
28	GO:0009306: protein secretion	1.24E-03
29	GO:0045727: positive regulation of translation	1.37E-03
30	GO:0015994: chlorophyll metabolic process	1.37E-03
31	GO:0015713: phosphoglycerate transport	1.37E-03
32	GO:0010222: stem vascular tissue pattern formation	1.37E-03
33	GO:0009735: response to cytokinin	1.40E-03
34	GO:0042335: cuticle development	1.45E-03
35	GO:0030308: negative regulation of cell growth	1.74E-03
36	GO:0080110: sporopollenin biosynthetic process	1.74E-03
37	GO:0009697: salicylic acid biosynthetic process	1.74E-03
38	GO:0006564: L-serine biosynthetic process	1.74E-03
39	GO:0000302: response to reactive oxygen species	1.92E-03
40	GO:0042549: photosystem II stabilization	2.14E-03
41	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.14E-03
42	GO:0006655: phosphatidylglycerol biosynthetic process	2.14E-03
43	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.14E-03
44	GO:0010337: regulation of salicylic acid metabolic process	2.14E-03
45	GO:0006561: proline biosynthetic process	2.14E-03
46	GO:1901259: chloroplast rRNA processing	2.57E-03
47	GO:0042372: phylloquinone biosynthetic process	2.57E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	2.57E-03
49	GO:0042744: hydrogen peroxide catabolic process	2.69E-03
50	GO:0016042: lipid catabolic process	2.70E-03
51	GO:0009395: phospholipid catabolic process	3.03E-03
52	GO:0009772: photosynthetic electron transport in photosystem II	3.03E-03
53	GO:1900057: positive regulation of leaf senescence	3.03E-03
54	GO:0010444: guard mother cell differentiation	3.03E-03
55	GO:0006400: tRNA modification	3.03E-03
56	GO:0006633: fatty acid biosynthetic process	3.05E-03
57	GO:0008610: lipid biosynthetic process	3.51E-03
58	GO:0006353: DNA-templated transcription, termination	3.51E-03
59	GO:0006605: protein targeting	3.51E-03
60	GO:0010492: maintenance of shoot apical meristem identity	3.51E-03
61	GO:0055075: potassium ion homeostasis	3.51E-03
62	GO:0010311: lateral root formation	3.77E-03
63	GO:0022900: electron transport chain	4.02E-03
64	GO:0032544: plastid translation	4.02E-03
65	GO:0048507: meristem development	4.54E-03
66	GO:0010206: photosystem II repair	4.54E-03
67	GO:0034765: regulation of ion transmembrane transport	4.54E-03
68	GO:0034599: cellular response to oxidative stress	4.74E-03
69	GO:0006032: chitin catabolic process	5.67E-03
70	GO:0009688: abscisic acid biosynthetic process	5.67E-03
71	GO:0048829: root cap development	5.67E-03
72	GO:0046856: phosphatidylinositol dephosphorylation	6.27E-03
73	GO:0000038: very long-chain fatty acid metabolic process	6.27E-03
74	GO:0019684: photosynthesis, light reaction	6.27E-03
75	GO:0009750: response to fructose	6.27E-03
76	GO:0018119: peptidyl-cysteine S-nitrosylation	6.27E-03
77	GO:0048765: root hair cell differentiation	6.27E-03
78	GO:0009737: response to abscisic acid	6.89E-03
79	GO:0015706: nitrate transport	6.89E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	7.52E-03
81	GO:0010628: positive regulation of gene expression	7.52E-03
82	GO:0009718: anthocyanin-containing compound biosynthetic process	7.52E-03
83	GO:0080167: response to karrikin	7.86E-03
84	GO:0009809: lignin biosynthetic process	7.88E-03
85	GO:0010143: cutin biosynthetic process	8.19E-03
86	GO:0045893: positive regulation of transcription, DNA-templated	8.33E-03
87	GO:0009825: multidimensional cell growth	8.87E-03
88	GO:0071732: cellular response to nitric oxide	8.87E-03
89	GO:0010053: root epidermal cell differentiation	8.87E-03
90	GO:0010025: wax biosynthetic process	9.57E-03
91	GO:0006636: unsaturated fatty acid biosynthetic process	9.57E-03
92	GO:2000377: regulation of reactive oxygen species metabolic process	1.03E-02
93	GO:0019953: sexual reproduction	1.10E-02
94	GO:0007017: microtubule-based process	1.10E-02
95	GO:0009695: jasmonic acid biosynthetic process	1.10E-02
96	GO:0009624: response to nematode	1.12E-02
97	GO:0009269: response to desiccation	1.18E-02
98	GO:0031408: oxylipin biosynthetic process	1.18E-02
99	GO:0003333: amino acid transmembrane transport	1.18E-02
100	GO:0016998: cell wall macromolecule catabolic process	1.18E-02
101	GO:0030245: cellulose catabolic process	1.26E-02
102	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.34E-02
103	GO:0071369: cellular response to ethylene stimulus	1.34E-02
104	GO:0010584: pollen exine formation	1.42E-02
105	GO:0042127: regulation of cell proliferation	1.42E-02
106	GO:0042391: regulation of membrane potential	1.59E-02
107	GO:0080022: primary root development	1.59E-02
108	GO:0000413: protein peptidyl-prolyl isomerization	1.59E-02
109	GO:0071472: cellular response to salt stress	1.67E-02
110	GO:0010305: leaf vascular tissue pattern formation	1.67E-02
111	GO:0009958: positive gravitropism	1.67E-02
112	GO:0010182: sugar mediated signaling pathway	1.67E-02
113	GO:0048544: recognition of pollen	1.76E-02
114	GO:0015986: ATP synthesis coupled proton transport	1.76E-02
115	GO:0048825: cotyledon development	1.85E-02
116	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.94E-02
117	GO:0045490: pectin catabolic process	1.95E-02
118	GO:0009734: auxin-activated signaling pathway	1.99E-02
119	GO:0016032: viral process	2.04E-02
120	GO:0055114: oxidation-reduction process	2.07E-02
121	GO:0071281: cellular response to iron ion	2.13E-02
122	GO:0009828: plant-type cell wall loosening	2.23E-02
123	GO:0071805: potassium ion transmembrane transport	2.33E-02
124	GO:0048573: photoperiodism, flowering	2.84E-02
125	GO:0009658: chloroplast organization	3.02E-02
126	GO:0030244: cellulose biosynthetic process	3.05E-02
127	GO:0009631: cold acclimation	3.38E-02
128	GO:0007568: aging	3.38E-02
129	GO:0006810: transport	3.45E-02
130	GO:0006865: amino acid transport	3.50E-02
131	GO:0005975: carbohydrate metabolic process	3.61E-02
132	GO:0009637: response to blue light	3.61E-02
133	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.86E-02
134	GO:0009926: auxin polar transport	4.32E-02
135	GO:0009651: response to salt stress	4.42E-02
136	GO:0006855: drug transmembrane transport	4.82E-02
137	GO:0006869: lipid transport	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0004130: cytochrome-c peroxidase activity	6.86E-05
5	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.98E-04
6	GO:0010242: oxygen evolving activity	1.98E-04
7	GO:0045485: omega-6 fatty acid desaturase activity	1.98E-04
8	GO:0004321: fatty-acyl-CoA synthase activity	1.98E-04
9	GO:0008909: isochorismate synthase activity	1.98E-04
10	GO:0015245: fatty acid transporter activity	1.98E-04
11	GO:0016788: hydrolase activity, acting on ester bonds	2.02E-04
12	GO:0016746: transferase activity, transferring acyl groups	2.58E-04
13	GO:0052689: carboxylic ester hydrolase activity	3.55E-04
14	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
15	GO:0016630: protochlorophyllide reductase activity	4.43E-04
16	GO:0015099: nickel cation transmembrane transporter activity	4.43E-04
17	GO:0047746: chlorophyllase activity	4.43E-04
18	GO:0004565: beta-galactosidase activity	5.18E-04
19	GO:0008266: poly(U) RNA binding	5.82E-04
20	GO:0005528: FK506 binding	8.01E-04
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.23E-04
22	GO:0016851: magnesium chelatase activity	1.03E-03
23	GO:0030570: pectate lyase activity	1.14E-03
24	GO:0010011: auxin binding	1.37E-03
25	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.37E-03
26	GO:0010328: auxin influx transmembrane transporter activity	1.37E-03
27	GO:0042277: peptide binding	1.37E-03
28	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.37E-03
29	GO:0015120: phosphoglycerate transmembrane transporter activity	1.37E-03
30	GO:0050662: coenzyme binding	1.67E-03
31	GO:0003959: NADPH dehydrogenase activity	1.74E-03
32	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.14E-03
33	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.14E-03
34	GO:0016688: L-ascorbate peroxidase activity	2.14E-03
35	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.14E-03
36	GO:0016787: hydrolase activity	2.22E-03
37	GO:0019843: rRNA binding	2.28E-03
38	GO:0005242: inward rectifier potassium channel activity	2.57E-03
39	GO:0016597: amino acid binding	2.61E-03
40	GO:0016491: oxidoreductase activity	2.68E-03
41	GO:0030246: carbohydrate binding	2.75E-03
42	GO:0009055: electron carrier activity	3.14E-03
43	GO:0052747: sinapyl alcohol dehydrogenase activity	3.51E-03
44	GO:0016207: 4-coumarate-CoA ligase activity	4.54E-03
45	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.65E-03
46	GO:0015112: nitrate transmembrane transporter activity	5.10E-03
47	GO:0004568: chitinase activity	5.67E-03
48	GO:0047372: acylglycerol lipase activity	6.27E-03
49	GO:0015293: symporter activity	6.57E-03
50	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.89E-03
51	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.89E-03
52	GO:0004022: alcohol dehydrogenase (NAD) activity	7.52E-03
53	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.57E-03
54	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.57E-03
55	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.57E-03
56	GO:0016874: ligase activity	1.06E-02
57	GO:0043424: protein histidine kinase binding	1.10E-02
58	GO:0004176: ATP-dependent peptidase activity	1.18E-02
59	GO:0008810: cellulase activity	1.34E-02
60	GO:0016829: lyase activity	1.53E-02
61	GO:0030551: cyclic nucleotide binding	1.59E-02
62	GO:0005249: voltage-gated potassium channel activity	1.59E-02
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.67E-02
64	GO:0016791: phosphatase activity	2.23E-02
65	GO:0005200: structural constituent of cytoskeleton	2.33E-02
66	GO:0042802: identical protein binding	2.48E-02
67	GO:0016168: chlorophyll binding	2.63E-02
68	GO:0030247: polysaccharide binding	2.84E-02
69	GO:0004601: peroxidase activity	3.02E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.05E-02
71	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.27E-02
72	GO:0003746: translation elongation factor activity	3.61E-02
73	GO:0003993: acid phosphatase activity	3.73E-02
74	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.75E-02
75	GO:0051539: 4 iron, 4 sulfur cluster binding	3.96E-02
76	GO:0051537: 2 iron, 2 sulfur cluster binding	4.57E-02
77	GO:0043621: protein self-association	4.57E-02
78	GO:0051287: NAD binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009534: chloroplast thylakoid	1.67E-21
4	GO:0009535: chloroplast thylakoid membrane	2.24E-19
5	GO:0009507: chloroplast	7.53E-18
6	GO:0009543: chloroplast thylakoid lumen	1.37E-13
7	GO:0009579: thylakoid	2.21E-13
8	GO:0031977: thylakoid lumen	3.58E-09
9	GO:0009941: chloroplast envelope	2.74E-07
10	GO:0009570: chloroplast stroma	3.60E-07
11	GO:0030095: chloroplast photosystem II	4.84E-07
12	GO:0009654: photosystem II oxygen evolving complex	5.18E-05
13	GO:0019898: extrinsic component of membrane	1.57E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-04
15	GO:0048046: apoplast	2.61E-04
16	GO:0030093: chloroplast photosystem I	4.43E-04
17	GO:0016021: integral component of membrane	5.05E-04
18	GO:0010007: magnesium chelatase complex	7.22E-04
19	GO:0009897: external side of plasma membrane	7.22E-04
20	GO:0033281: TAT protein transport complex	7.22E-04
21	GO:0015630: microtubule cytoskeleton	1.03E-03
22	GO:0010287: plastoglobule	2.13E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.14E-03
24	GO:0009533: chloroplast stromal thylakoid	3.03E-03
25	GO:0009986: cell surface	3.03E-03
26	GO:0009538: photosystem I reaction center	3.51E-03
27	GO:0008180: COP9 signalosome	4.54E-03
28	GO:0005578: proteinaceous extracellular matrix	7.52E-03
29	GO:0009508: plastid chromosome	7.52E-03
30	GO:0031969: chloroplast membrane	7.86E-03
31	GO:0005618: cell wall	8.40E-03
32	GO:0009522: photosystem I	1.76E-02
33	GO:0005576: extracellular region	1.80E-02
34	GO:0009523: photosystem II	1.85E-02
35	GO:0010319: stromule	2.33E-02
36	GO:0009295: nucleoid	2.33E-02
37	GO:0046658: anchored component of plasma membrane	2.58E-02
38	GO:0009505: plant-type cell wall	2.73E-02
39	GO:0019005: SCF ubiquitin ligase complex	3.05E-02