co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043269: regulation of ion transport	0.00E+00
2	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
3	GO:0000188: inactivation of MAPK activity	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0045185: maintenance of protein location	0.00E+00
6	GO:0006014: D-ribose metabolic process	2.21E-05
7	GO:0035266: meristem growth	9.88E-05
8	GO:0071586: CAAX-box protein processing	9.88E-05
9	GO:0007292: female gamete generation	9.88E-05
10	GO:0006422: aspartyl-tRNA aminoacylation	9.88E-05
11	GO:0019673: GDP-mannose metabolic process	9.88E-05
12	GO:0080120: CAAX-box protein maturation	9.88E-05
13	GO:0071365: cellular response to auxin stimulus	1.72E-04
14	GO:0007584: response to nutrient	2.32E-04
15	GO:0051788: response to misfolded protein	2.32E-04
16	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.32E-04
17	GO:0007154: cell communication	2.32E-04
18	GO:0015914: phospholipid transport	2.32E-04
19	GO:0010155: regulation of proton transport	2.32E-04
20	GO:0000162: tryptophan biosynthetic process	2.84E-04
21	GO:0060968: regulation of gene silencing	3.86E-04
22	GO:0002230: positive regulation of defense response to virus by host	3.86E-04
23	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	3.86E-04
24	GO:0006468: protein phosphorylation	4.48E-04
25	GO:0046686: response to cadmium ion	5.46E-04
26	GO:1902290: positive regulation of defense response to oomycetes	5.54E-04
27	GO:0019252: starch biosynthetic process	7.16E-04
28	GO:0033320: UDP-D-xylose biosynthetic process	7.37E-04
29	GO:0042273: ribosomal large subunit biogenesis	7.37E-04
30	GO:0010107: potassium ion import	7.37E-04
31	GO:0006891: intra-Golgi vesicle-mediated transport	7.65E-04
32	GO:0010583: response to cyclopentenone	8.14E-04
33	GO:0007029: endoplasmic reticulum organization	9.32E-04
34	GO:0010225: response to UV-C	9.32E-04
35	GO:0030308: negative regulation of cell growth	9.32E-04
36	GO:0048232: male gamete generation	1.14E-03
37	GO:0043248: proteasome assembly	1.14E-03
38	GO:0070814: hydrogen sulfide biosynthetic process	1.14E-03
39	GO:0042732: D-xylose metabolic process	1.14E-03
40	GO:0009267: cellular response to starvation	1.14E-03
41	GO:0042176: regulation of protein catabolic process	1.14E-03
42	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.14E-03
43	GO:0048827: phyllome development	1.14E-03
44	GO:0048280: vesicle fusion with Golgi apparatus	1.36E-03
45	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.59E-03
46	GO:1900057: positive regulation of leaf senescence	1.59E-03
47	GO:0007568: aging	1.61E-03
48	GO:0016559: peroxisome fission	1.84E-03
49	GO:0006099: tricarboxylic acid cycle	1.84E-03
50	GO:0006605: protein targeting	1.84E-03
51	GO:0010078: maintenance of root meristem identity	1.84E-03
52	GO:0006102: isocitrate metabolic process	1.84E-03
53	GO:0048193: Golgi vesicle transport	2.10E-03
54	GO:1900426: positive regulation of defense response to bacterium	2.65E-03
55	GO:0045454: cell redox homeostasis	2.91E-03
56	GO:0006896: Golgi to vacuole transport	2.95E-03
57	GO:0006535: cysteine biosynthetic process from serine	2.95E-03
58	GO:0000103: sulfate assimilation	2.95E-03
59	GO:0048829: root cap development	2.95E-03
60	GO:0010015: root morphogenesis	3.25E-03
61	GO:0030148: sphingolipid biosynthetic process	3.25E-03
62	GO:0000266: mitochondrial fission	3.57E-03
63	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	3.57E-03
64	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.89E-03
65	GO:0048467: gynoecium development	4.22E-03
66	GO:0009933: meristem structural organization	4.22E-03
67	GO:0009225: nucleotide-sugar metabolic process	4.57E-03
68	GO:0090351: seedling development	4.57E-03
69	GO:0034976: response to endoplasmic reticulum stress	4.92E-03
70	GO:0019344: cysteine biosynthetic process	5.28E-03
71	GO:0016226: iron-sulfur cluster assembly	6.42E-03
72	GO:0030433: ubiquitin-dependent ERAD pathway	6.42E-03
73	GO:0007005: mitochondrion organization	6.42E-03
74	GO:0080092: regulation of pollen tube growth	6.42E-03
75	GO:0006012: galactose metabolic process	6.82E-03
76	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.64E-03
77	GO:0042147: retrograde transport, endosome to Golgi	7.64E-03
78	GO:0008284: positive regulation of cell proliferation	7.64E-03
79	GO:0010118: stomatal movement	8.07E-03
80	GO:0045489: pectin biosynthetic process	8.50E-03
81	GO:0006662: glycerol ether metabolic process	8.50E-03
82	GO:0048544: recognition of pollen	8.94E-03
83	GO:0006623: protein targeting to vacuole	9.39E-03
84	GO:0010183: pollen tube guidance	9.39E-03
85	GO:0009630: gravitropism	1.03E-02
86	GO:0016032: viral process	1.03E-02
87	GO:0006888: ER to Golgi vesicle-mediated transport	1.43E-02
88	GO:0010311: lateral root formation	1.60E-02
89	GO:0006499: N-terminal protein myristoylation	1.65E-02
90	GO:0010043: response to zinc ion	1.71E-02
91	GO:0016310: phosphorylation	1.77E-02
92	GO:0045087: innate immune response	1.82E-02
93	GO:0016051: carbohydrate biosynthetic process	1.82E-02
94	GO:0034599: cellular response to oxidative stress	1.88E-02
95	GO:0006897: endocytosis	2.06E-02
96	GO:0051707: response to other organism	2.18E-02
97	GO:0006397: mRNA processing	2.21E-02
98	GO:0009733: response to auxin	2.23E-02
99	GO:0000209: protein polyubiquitination	2.24E-02
100	GO:0009965: leaf morphogenesis	2.37E-02
101	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.50E-02
102	GO:0006364: rRNA processing	2.70E-02
103	GO:0010224: response to UV-B	2.77E-02
104	GO:0009734: auxin-activated signaling pathway	2.98E-02
105	GO:0006096: glycolytic process	3.04E-02
106	GO:0048367: shoot system development	3.11E-02
107	GO:0018105: peptidyl-serine phosphorylation	3.54E-02
108	GO:0009738: abscisic acid-activated signaling pathway	3.63E-02
109	GO:0035556: intracellular signal transduction	3.95E-02
110	GO:0055085: transmembrane transport	4.74E-02
111	GO:0006633: fatty acid biosynthetic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
4	GO:0004747: ribokinase activity	3.14E-05
5	GO:0016301: kinase activity	3.44E-05
6	GO:0008865: fructokinase activity	5.57E-05
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	9.88E-05
8	GO:0004815: aspartate-tRNA ligase activity	9.88E-05
9	GO:0008446: GDP-mannose 4,6-dehydratase activity	9.88E-05
10	GO:0000386: second spliceosomal transesterification activity	9.88E-05
11	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	9.88E-05
12	GO:0005524: ATP binding	1.64E-04
13	GO:0045140: inositol phosphoceramide synthase activity	2.32E-04
14	GO:0005047: signal recognition particle binding	3.86E-04
15	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.86E-04
16	GO:0004781: sulfate adenylyltransferase (ATP) activity	3.86E-04
17	GO:0047134: protein-disulfide reductase activity	5.38E-04
18	GO:0004449: isocitrate dehydrogenase (NAD+) activity	5.54E-04
19	GO:0004791: thioredoxin-disulfide reductase activity	6.69E-04
20	GO:0016853: isomerase activity	6.69E-04
21	GO:0004834: tryptophan synthase activity	7.37E-04
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.37E-04
23	GO:0005496: steroid binding	9.32E-04
24	GO:0048040: UDP-glucuronate decarboxylase activity	1.14E-03
25	GO:0035252: UDP-xylosyltransferase activity	1.14E-03
26	GO:0036402: proteasome-activating ATPase activity	1.14E-03
27	GO:0004124: cysteine synthase activity	1.36E-03
28	GO:0070403: NAD+ binding	1.36E-03
29	GO:0008143: poly(A) binding	1.59E-03
30	GO:0004034: aldose 1-epimerase activity	1.84E-03
31	GO:0005267: potassium channel activity	2.10E-03
32	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.37E-03
33	GO:0004743: pyruvate kinase activity	2.65E-03
34	GO:0030955: potassium ion binding	2.65E-03
35	GO:0030234: enzyme regulator activity	2.95E-03
36	GO:0004713: protein tyrosine kinase activity	2.95E-03
37	GO:0005543: phospholipid binding	3.25E-03
38	GO:0004022: alcohol dehydrogenase (NAD) activity	3.89E-03
39	GO:0031624: ubiquitin conjugating enzyme binding	4.22E-03
40	GO:0004175: endopeptidase activity	4.22E-03
41	GO:0016746: transferase activity, transferring acyl groups	4.44E-03
42	GO:0017025: TBP-class protein binding	4.57E-03
43	GO:0004725: protein tyrosine phosphatase activity	4.92E-03
44	GO:0004674: protein serine/threonine kinase activity	5.28E-03
45	GO:0051536: iron-sulfur cluster binding	5.28E-03
46	GO:0003756: protein disulfide isomerase activity	7.23E-03
47	GO:0003727: single-stranded RNA binding	7.23E-03
48	GO:0001085: RNA polymerase II transcription factor binding	8.50E-03
49	GO:0010181: FMN binding	8.94E-03
50	GO:0004872: receptor activity	9.39E-03
51	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.44E-03
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.08E-02
53	GO:0030246: carbohydrate binding	1.15E-02
54	GO:0051213: dioxygenase activity	1.28E-02
55	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.38E-02
56	GO:0008233: peptidase activity	1.40E-02
57	GO:0004806: triglyceride lipase activity	1.43E-02
58	GO:0004683: calmodulin-dependent protein kinase activity	1.43E-02
59	GO:0008236: serine-type peptidase activity	1.49E-02
60	GO:0004222: metalloendopeptidase activity	1.65E-02
61	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.71E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.94E-02
63	GO:0000149: SNARE binding	1.94E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	2.00E-02
65	GO:0003924: GTPase activity	2.11E-02
66	GO:0003824: catalytic activity	2.16E-02
67	GO:0005484: SNAP receptor activity	2.18E-02
68	GO:0015171: amino acid transmembrane transporter activity	2.90E-02
69	GO:0004672: protein kinase activity	3.11E-02
70	GO:0003729: mRNA binding	3.16E-02
71	GO:0016887: ATPase activity	3.27E-02
72	GO:0015035: protein disulfide oxidoreductase activity	3.54E-02
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.15E-02
74	GO:0030170: pyridoxal phosphate binding	4.38E-02
75	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.46E-02
76	GO:0015144: carbohydrate transmembrane transporter activity	4.62E-02
77	GO:0005515: protein binding	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	7.72E-05
3	GO:0005829: cytosol	8.37E-05
4	GO:0045252: oxoglutarate dehydrogenase complex	9.88E-05
5	GO:0031902: late endosome membrane	1.98E-04
6	GO:0005789: endoplasmic reticulum membrane	5.26E-04
7	GO:0005802: trans-Golgi network	6.88E-04
8	GO:0016021: integral component of membrane	9.43E-04
9	GO:0005783: endoplasmic reticulum	1.11E-03
10	GO:0030140: trans-Golgi network transport vesicle	1.14E-03
11	GO:0030173: integral component of Golgi membrane	1.36E-03
12	GO:0031597: cytosolic proteasome complex	1.36E-03
13	GO:0005794: Golgi apparatus	1.46E-03
14	GO:0030687: preribosome, large subunit precursor	1.59E-03
15	GO:0031595: nuclear proteasome complex	1.59E-03
16	GO:0000325: plant-type vacuole	1.61E-03
17	GO:0030131: clathrin adaptor complex	1.84E-03
18	GO:0034399: nuclear periphery	1.84E-03
19	GO:0012507: ER to Golgi transport vesicle membrane	1.84E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.10E-03
21	GO:0010494: cytoplasmic stress granule	2.37E-03
22	GO:0005774: vacuolar membrane	2.64E-03
23	GO:0008540: proteasome regulatory particle, base subcomplex	2.65E-03
24	GO:0030125: clathrin vesicle coat	2.95E-03
25	GO:0000502: proteasome complex	3.04E-03
26	GO:0008541: proteasome regulatory particle, lid subcomplex	3.25E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	4.57E-03
28	GO:0005741: mitochondrial outer membrane	6.03E-03
29	GO:0005905: clathrin-coated pit	6.03E-03
30	GO:0000139: Golgi membrane	7.20E-03
31	GO:0005770: late endosome	8.50E-03
32	GO:0032580: Golgi cisterna membrane	1.13E-02
33	GO:0005778: peroxisomal membrane	1.18E-02
34	GO:0005788: endoplasmic reticulum lumen	1.33E-02
35	GO:0005667: transcription factor complex	1.38E-02
36	GO:0000151: ubiquitin ligase complex	1.54E-02
37	GO:0005768: endosome	1.68E-02
38	GO:0031201: SNARE complex	2.06E-02
39	GO:0016020: membrane	2.68E-02
40	GO:0005681: spliceosomal complex	3.04E-02
41	GO:0010008: endosome membrane	3.11E-02
42	GO:0005747: mitochondrial respiratory chain complex I	3.11E-02