Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0051493: regulation of cytoskeleton organization0.00E+00
5GO:0044154: histone H3-K14 acetylation0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0006223: uracil salvage0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0015805: S-adenosyl-L-methionine transport0.00E+00
12GO:0006642: triglyceride mobilization0.00E+00
13GO:0042407: cristae formation0.00E+00
14GO:0043972: histone H3-K23 acetylation0.00E+00
15GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
16GO:0042371: vitamin K biosynthetic process0.00E+00
17GO:0006399: tRNA metabolic process0.00E+00
18GO:0009658: chloroplast organization6.16E-08
19GO:0006412: translation6.13E-07
20GO:0006457: protein folding3.09E-06
21GO:0006695: cholesterol biosynthetic process3.83E-06
22GO:0032544: plastid translation1.04E-05
23GO:0051085: chaperone mediated protein folding requiring cofactor3.07E-05
24GO:0015979: photosynthesis3.13E-05
25GO:0010020: chloroplast fission6.11E-05
26GO:0015995: chlorophyll biosynthetic process7.13E-05
27GO:0009793: embryo development ending in seed dormancy1.04E-04
28GO:0006418: tRNA aminoacylation for protein translation1.18E-04
29GO:0007017: microtubule-based process1.18E-04
30GO:0042372: phylloquinone biosynthetic process1.74E-04
31GO:0009735: response to cytokinin2.35E-04
32GO:0000413: protein peptidyl-prolyl isomerization2.47E-04
33GO:0048564: photosystem I assembly2.87E-04
34GO:0006430: lysyl-tRNA aminoacylation2.89E-04
35GO:0043971: histone H3-K18 acetylation2.89E-04
36GO:0043489: RNA stabilization2.89E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process2.89E-04
38GO:0006426: glycyl-tRNA aminoacylation2.89E-04
39GO:1904964: positive regulation of phytol biosynthetic process2.89E-04
40GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.89E-04
41GO:0071482: cellular response to light stimulus3.53E-04
42GO:0045337: farnesyl diphosphate biosynthetic process4.25E-04
43GO:0033384: geranyl diphosphate biosynthetic process4.25E-04
44GO:0042254: ribosome biogenesis5.66E-04
45GO:0045036: protein targeting to chloroplast5.88E-04
46GO:0006568: tryptophan metabolic process6.34E-04
47GO:0010270: photosystem II oxygen evolving complex assembly6.34E-04
48GO:0043039: tRNA aminoacylation6.34E-04
49GO:1902326: positive regulation of chlorophyll biosynthetic process6.34E-04
50GO:0006423: cysteinyl-tRNA aminoacylation6.34E-04
51GO:0071258: cellular response to gravity6.34E-04
52GO:0043085: positive regulation of catalytic activity6.77E-04
53GO:0006352: DNA-templated transcription, initiation6.77E-04
54GO:0032504: multicellular organism reproduction1.03E-03
55GO:0019563: glycerol catabolic process1.03E-03
56GO:0010581: regulation of starch biosynthetic process1.03E-03
57GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.03E-03
58GO:0006241: CTP biosynthetic process1.47E-03
59GO:0019048: modulation by virus of host morphology or physiology1.47E-03
60GO:0006424: glutamyl-tRNA aminoacylation1.47E-03
61GO:0006165: nucleoside diphosphate phosphorylation1.47E-03
62GO:0006228: UTP biosynthetic process1.47E-03
63GO:0031048: chromatin silencing by small RNA1.47E-03
64GO:0010088: phloem development1.47E-03
65GO:0043572: plastid fission1.47E-03
66GO:0016556: mRNA modification1.47E-03
67GO:0006986: response to unfolded protein1.47E-03
68GO:2001141: regulation of RNA biosynthetic process1.47E-03
69GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.95E-03
70GO:0006085: acetyl-CoA biosynthetic process1.97E-03
71GO:0006183: GTP biosynthetic process1.97E-03
72GO:0042991: transcription factor import into nucleus1.97E-03
73GO:0051567: histone H3-K9 methylation1.97E-03
74GO:0071483: cellular response to blue light1.97E-03
75GO:0044206: UMP salvage1.97E-03
76GO:0006808: regulation of nitrogen utilization1.97E-03
77GO:0042335: cuticle development2.48E-03
78GO:0032543: mitochondrial translation2.52E-03
79GO:0048359: mucilage metabolic process involved in seed coat development2.52E-03
80GO:0006564: L-serine biosynthetic process2.52E-03
81GO:0010236: plastoquinone biosynthetic process2.52E-03
82GO:0045038: protein import into chloroplast thylakoid membrane2.52E-03
83GO:0043097: pyrimidine nucleoside salvage2.52E-03
84GO:0031365: N-terminal protein amino acid modification2.52E-03
85GO:0042549: photosystem II stabilization3.11E-03
86GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.11E-03
87GO:0000470: maturation of LSU-rRNA3.11E-03
88GO:0006555: methionine metabolic process3.11E-03
89GO:1904668: positive regulation of ubiquitin protein ligase activity3.11E-03
90GO:0010190: cytochrome b6f complex assembly3.11E-03
91GO:0006828: manganese ion transport3.11E-03
92GO:0006206: pyrimidine nucleobase metabolic process3.11E-03
93GO:0016458: gene silencing3.11E-03
94GO:0006014: D-ribose metabolic process3.11E-03
95GO:0010555: response to mannitol3.74E-03
96GO:0042026: protein refolding3.74E-03
97GO:0048280: vesicle fusion with Golgi apparatus3.74E-03
98GO:0009854: oxidative photosynthetic carbon pathway3.74E-03
99GO:0009828: plant-type cell wall loosening3.99E-03
100GO:0045995: regulation of embryonic development4.41E-03
101GO:0009772: photosynthetic electron transport in photosystem II4.41E-03
102GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.41E-03
103GO:0010027: thylakoid membrane organization4.76E-03
104GO:0045454: cell redox homeostasis4.77E-03
105GO:0045292: mRNA cis splicing, via spliceosome5.12E-03
106GO:0010928: regulation of auxin mediated signaling pathway5.12E-03
107GO:0009642: response to light intensity5.12E-03
108GO:0009627: systemic acquired resistance5.32E-03
109GO:0019430: removal of superoxide radicals5.87E-03
110GO:0009657: plastid organization5.87E-03
111GO:0044030: regulation of DNA methylation5.87E-03
112GO:0006508: proteolysis6.14E-03
113GO:0048481: plant ovule development6.21E-03
114GO:0015780: nucleotide-sugar transport6.65E-03
115GO:0006783: heme biosynthetic process6.65E-03
116GO:0000373: Group II intron splicing6.65E-03
117GO:0009451: RNA modification7.13E-03
118GO:0043067: regulation of programmed cell death7.48E-03
119GO:0006779: porphyrin-containing compound biosynthetic process7.48E-03
120GO:0035999: tetrahydrofolate interconversion7.48E-03
121GO:0042761: very long-chain fatty acid biosynthetic process7.48E-03
122GO:0010380: regulation of chlorophyll biosynthetic process7.48E-03
123GO:0006949: syncytium formation8.33E-03
124GO:0006896: Golgi to vacuole transport8.33E-03
125GO:0006782: protoporphyrinogen IX biosynthetic process8.33E-03
126GO:0030422: production of siRNA involved in RNA interference8.33E-03
127GO:0006816: calcium ion transport9.22E-03
128GO:0009773: photosynthetic electron transport in photosystem I9.22E-03
129GO:0009073: aromatic amino acid family biosynthetic process9.22E-03
130GO:0006415: translational termination9.22E-03
131GO:0006631: fatty acid metabolic process9.37E-03
132GO:0045037: protein import into chloroplast stroma1.01E-02
133GO:0006094: gluconeogenesis1.11E-02
134GO:0010207: photosystem II assembly1.21E-02
135GO:0019253: reductive pentose-phosphate cycle1.21E-02
136GO:0009664: plant-type cell wall organization1.28E-02
137GO:0080188: RNA-directed DNA methylation1.31E-02
138GO:0090351: seedling development1.31E-02
139GO:0010025: wax biosynthetic process1.41E-02
140GO:0019344: cysteine biosynthetic process1.52E-02
141GO:0009116: nucleoside metabolic process1.52E-02
142GO:0000027: ribosomal large subunit assembly1.52E-02
143GO:0007010: cytoskeleton organization1.52E-02
144GO:0008299: isoprenoid biosynthetic process1.63E-02
145GO:0006306: DNA methylation1.75E-02
146GO:0016226: iron-sulfur cluster assembly1.86E-02
147GO:0006730: one-carbon metabolic process1.86E-02
148GO:0007005: mitochondrion organization1.86E-02
149GO:0009411: response to UV1.98E-02
150GO:0016117: carotenoid biosynthetic process2.23E-02
151GO:0042147: retrograde transport, endosome to Golgi2.23E-02
152GO:0080022: primary root development2.35E-02
153GO:0006342: chromatin silencing2.48E-02
154GO:0008360: regulation of cell shape2.48E-02
155GO:0009958: positive gravitropism2.48E-02
156GO:0006662: glycerol ether metabolic process2.48E-02
157GO:0010197: polar nucleus fusion2.48E-02
158GO:0009409: response to cold2.48E-02
159GO:0006629: lipid metabolic process2.60E-02
160GO:0006623: protein targeting to vacuole2.75E-02
161GO:0048825: cotyledon development2.75E-02
162GO:0019252: starch biosynthetic process2.75E-02
163GO:0009790: embryo development2.87E-02
164GO:0006891: intra-Golgi vesicle-mediated transport2.88E-02
165GO:0032502: developmental process3.02E-02
166GO:0007264: small GTPase mediated signal transduction3.02E-02
167GO:0016032: viral process3.02E-02
168GO:0006633: fatty acid biosynthetic process3.09E-02
169GO:0051607: defense response to virus3.60E-02
170GO:0009816: defense response to bacterium, incompatible interaction3.90E-02
171GO:0006888: ER to Golgi vesicle-mediated transport4.21E-02
172GO:0018298: protein-chromophore linkage4.53E-02
173GO:0008219: cell death4.53E-02
174GO:0006811: ion transport4.85E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0019843: rRNA binding9.37E-14
13GO:0003735: structural constituent of ribosome5.52E-09
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.30E-08
15GO:0008237: metallopeptidase activity4.16E-05
16GO:0001053: plastid sigma factor activity5.52E-05
17GO:0016987: sigma factor activity5.52E-05
18GO:0051082: unfolded protein binding7.88E-05
19GO:0004176: ATP-dependent peptidase activity1.36E-04
20GO:0051920: peroxiredoxin activity1.74E-04
21GO:0004812: aminoacyl-tRNA ligase activity2.22E-04
22GO:0016209: antioxidant activity2.87E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.89E-04
24GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.89E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity2.89E-04
26GO:0004824: lysine-tRNA ligase activity2.89E-04
27GO:0004807: triose-phosphate isomerase activity2.89E-04
28GO:0004831: tyrosine-tRNA ligase activity2.89E-04
29GO:0004655: porphobilinogen synthase activity2.89E-04
30GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.89E-04
31GO:0004820: glycine-tRNA ligase activity2.89E-04
32GO:0004337: geranyltranstransferase activity4.25E-04
33GO:0005200: structural constituent of cytoskeleton5.05E-04
34GO:0008047: enzyme activator activity5.88E-04
35GO:0004617: phosphoglycerate dehydrogenase activity6.34E-04
36GO:0004817: cysteine-tRNA ligase activity6.34E-04
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.34E-04
38GO:0000774: adenyl-nucleotide exchange factor activity6.34E-04
39GO:0016630: protochlorophyllide reductase activity6.34E-04
40GO:0004161: dimethylallyltranstransferase activity6.77E-04
41GO:0016887: ATPase activity8.88E-04
42GO:0004222: metalloendopeptidase activity9.24E-04
43GO:0008266: poly(U) RNA binding9.86E-04
44GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.03E-03
45GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.03E-03
46GO:0070330: aromatase activity1.03E-03
47GO:0017150: tRNA dihydrouridine synthase activity1.03E-03
48GO:0002161: aminoacyl-tRNA editing activity1.03E-03
49GO:0004148: dihydrolipoyl dehydrogenase activity1.03E-03
50GO:0005524: ATP binding1.03E-03
51GO:0030267: glyoxylate reductase (NADP) activity1.03E-03
52GO:0005528: FK506 binding1.35E-03
53GO:0008097: 5S rRNA binding1.47E-03
54GO:0003878: ATP citrate synthase activity1.47E-03
55GO:0016149: translation release factor activity, codon specific1.47E-03
56GO:0035197: siRNA binding1.47E-03
57GO:0016851: magnesium chelatase activity1.47E-03
58GO:0004550: nucleoside diphosphate kinase activity1.47E-03
59GO:0051087: chaperone binding1.49E-03
60GO:0042802: identical protein binding1.93E-03
61GO:0004845: uracil phosphoribosyltransferase activity1.97E-03
62GO:0010385: double-stranded methylated DNA binding1.97E-03
63GO:0043495: protein anchor1.97E-03
64GO:0004659: prenyltransferase activity1.97E-03
65GO:0003959: NADPH dehydrogenase activity2.52E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor2.52E-03
67GO:0018685: alkane 1-monooxygenase activity2.52E-03
68GO:0004040: amidase activity2.52E-03
69GO:0004791: thioredoxin-disulfide reductase activity2.87E-03
70GO:0005525: GTP binding3.10E-03
71GO:0016208: AMP binding3.11E-03
72GO:0097027: ubiquitin-protein transferase activator activity3.11E-03
73GO:0003729: mRNA binding3.39E-03
74GO:0010997: anaphase-promoting complex binding3.74E-03
75GO:0004849: uridine kinase activity3.74E-03
76GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.74E-03
77GO:0102391: decanoate--CoA ligase activity3.74E-03
78GO:0004747: ribokinase activity3.74E-03
79GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.74E-03
80GO:0019900: kinase binding3.74E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-03
82GO:0016831: carboxy-lyase activity4.41E-03
83GO:0008235: metalloexopeptidase activity4.41E-03
84GO:0019899: enzyme binding4.41E-03
85GO:0004467: long-chain fatty acid-CoA ligase activity4.41E-03
86GO:0008312: 7S RNA binding5.12E-03
87GO:0004033: aldo-keto reductase (NADP) activity5.12E-03
88GO:0008865: fructokinase activity5.12E-03
89GO:0042803: protein homodimerization activity5.12E-03
90GO:0003924: GTPase activity6.56E-03
91GO:0003747: translation release factor activity6.65E-03
92GO:0005384: manganese ion transmembrane transporter activity7.48E-03
93GO:0047617: acyl-CoA hydrolase activity7.48E-03
94GO:0003746: translation elongation factor activity7.88E-03
95GO:0044183: protein binding involved in protein folding9.22E-03
96GO:0005089: Rho guanyl-nucleotide exchange factor activity9.22E-03
97GO:0004177: aminopeptidase activity9.22E-03
98GO:0004521: endoribonuclease activity1.01E-02
99GO:0000049: tRNA binding1.01E-02
100GO:0003723: RNA binding1.04E-02
101GO:0043621: protein self-association1.10E-02
102GO:0015095: magnesium ion transmembrane transporter activity1.11E-02
103GO:0031072: heat shock protein binding1.11E-02
104GO:0008081: phosphoric diester hydrolase activity1.11E-02
105GO:0016788: hydrolase activity, acting on ester bonds1.24E-02
106GO:0005509: calcium ion binding1.29E-02
107GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.38E-02
108GO:0051536: iron-sulfur cluster binding1.52E-02
109GO:0008324: cation transmembrane transporter activity1.63E-02
110GO:0019706: protein-cysteine S-palmitoyltransferase activity1.75E-02
111GO:0022891: substrate-specific transmembrane transporter activity1.98E-02
112GO:0008514: organic anion transmembrane transporter activity2.10E-02
113GO:0047134: protein-disulfide reductase activity2.23E-02
114GO:0004402: histone acetyltransferase activity2.35E-02
115GO:0008080: N-acetyltransferase activity2.48E-02
116GO:0050662: coenzyme binding2.61E-02
117GO:0004519: endonuclease activity2.88E-02
118GO:0008565: protein transporter activity2.94E-02
119GO:0016597: amino acid binding3.60E-02
120GO:0016168: chlorophyll binding3.90E-02
121GO:0008236: serine-type peptidase activity4.37E-02
122GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.37E-02
123GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.53E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0070971: endoplasmic reticulum exit site0.00E+00
3GO:0009507: chloroplast6.16E-65
4GO:0009570: chloroplast stroma1.23E-54
5GO:0009941: chloroplast envelope1.37E-40
6GO:0009579: thylakoid1.77E-16
7GO:0031977: thylakoid lumen2.11E-16
8GO:0009543: chloroplast thylakoid lumen2.74E-15
9GO:0009535: chloroplast thylakoid membrane1.82E-14
10GO:0005840: ribosome5.05E-07
11GO:0019898: extrinsic component of membrane7.59E-07
12GO:0000311: plastid large ribosomal subunit9.09E-07
13GO:0031969: chloroplast membrane2.04E-06
14GO:0009534: chloroplast thylakoid2.28E-06
15GO:0009654: photosystem II oxygen evolving complex4.42E-06
16GO:0045298: tubulin complex1.45E-05
17GO:0009536: plastid4.35E-05
18GO:0009547: plastid ribosome2.89E-04
19GO:0033597: mitotic checkpoint complex2.89E-04
20GO:0080085: signal recognition particle, chloroplast targeting6.34E-04
21GO:0030095: chloroplast photosystem II9.86E-04
22GO:0000312: plastid small ribosomal subunit9.86E-04
23GO:0010007: magnesium chelatase complex1.03E-03
24GO:0005719: nuclear euchromatin1.47E-03
25GO:0009346: citrate lyase complex1.47E-03
26GO:0042651: thylakoid membrane1.49E-03
27GO:0009532: plastid stroma1.64E-03
28GO:0005739: mitochondrion2.01E-03
29GO:0046658: anchored component of plasma membrane2.06E-03
30GO:0000793: condensed chromosome3.11E-03
31GO:0009706: chloroplast inner membrane3.45E-03
32GO:0005762: mitochondrial large ribosomal subunit3.74E-03
33GO:0022625: cytosolic large ribosomal subunit3.92E-03
34GO:0022626: cytosolic ribosome4.01E-03
35GO:0010319: stromule4.24E-03
36GO:0009533: chloroplast stromal thylakoid4.41E-03
37GO:0000794: condensed nuclear chromosome4.41E-03
38GO:0005623: cell4.75E-03
39GO:0030529: intracellular ribonucleoprotein complex4.76E-03
40GO:0012507: ER to Golgi transport vesicle membrane5.12E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.87E-03
42GO:0005759: mitochondrial matrix6.14E-03
43GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.65E-03
44GO:0015030: Cajal body7.48E-03
45GO:0043231: intracellular membrane-bounded organelle7.61E-03
46GO:0016020: membrane9.92E-03
47GO:0030659: cytoplasmic vesicle membrane1.21E-02
48GO:0005875: microtubule associated complex1.41E-02
49GO:0005874: microtubule1.52E-02
50GO:0015935: small ribosomal subunit1.75E-02
51GO:0009523: photosystem II2.75E-02
52GO:0009295: nucleoid3.45E-02
53GO:0005778: peroxisomal membrane3.45E-02
54GO:0022627: cytosolic small ribosomal subunit4.48E-02
55GO:0009707: chloroplast outer membrane4.53E-02
Gene type



Gene DE type