Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
2GO:0045185: maintenance of protein location0.00E+00
3GO:0006182: cGMP biosynthetic process0.00E+00
4GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
5GO:0043269: regulation of ion transport0.00E+00
6GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
7GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
8GO:0010360: negative regulation of anion channel activity0.00E+00
9GO:0006105: succinate metabolic process0.00E+00
10GO:0019484: beta-alanine catabolic process0.00E+00
11GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
12GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
13GO:0019481: L-alanine catabolic process, by transamination0.00E+00
14GO:0048227: plasma membrane to endosome transport0.00E+00
15GO:0010398: xylogalacturonan metabolic process0.00E+00
16GO:0046686: response to cadmium ion1.30E-06
17GO:0000162: tryptophan biosynthetic process1.76E-06
18GO:0009399: nitrogen fixation2.38E-05
19GO:1900425: negative regulation of defense response to bacterium1.01E-04
20GO:0006014: D-ribose metabolic process1.01E-04
21GO:0010150: leaf senescence1.60E-04
22GO:0016559: peroxisome fission2.32E-04
23GO:0009819: drought recovery2.32E-04
24GO:0080120: CAAX-box protein maturation2.51E-04
25GO:0035266: meristem growth2.51E-04
26GO:0009450: gamma-aminobutyric acid catabolic process2.51E-04
27GO:0071586: CAAX-box protein processing2.51E-04
28GO:0007292: female gamete generation2.51E-04
29GO:0051245: negative regulation of cellular defense response2.51E-04
30GO:0010941: regulation of cell death2.51E-04
31GO:0009865: pollen tube adhesion2.51E-04
32GO:0032469: endoplasmic reticulum calcium ion homeostasis2.51E-04
33GO:1902361: mitochondrial pyruvate transmembrane transport2.51E-04
34GO:0006540: glutamate decarboxylation to succinate2.51E-04
35GO:0006468: protein phosphorylation3.64E-04
36GO:0008202: steroid metabolic process4.10E-04
37GO:0043069: negative regulation of programmed cell death4.80E-04
38GO:0048829: root cap development4.80E-04
39GO:0010033: response to organic substance5.53E-04
40GO:0006850: mitochondrial pyruvate transport5.53E-04
41GO:0051788: response to misfolded protein5.53E-04
42GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.53E-04
43GO:0007154: cell communication5.53E-04
44GO:0052542: defense response by callose deposition5.53E-04
45GO:0051258: protein polymerization5.53E-04
46GO:0019441: tryptophan catabolic process to kynurenine5.53E-04
47GO:0046777: protein autophosphorylation6.23E-04
48GO:0000266: mitochondrial fission6.33E-04
49GO:0010311: lateral root formation6.71E-04
50GO:0010043: response to zinc ion7.57E-04
51GO:0060968: regulation of gene silencing8.99E-04
52GO:0010359: regulation of anion channel activity8.99E-04
53GO:0061158: 3'-UTR-mediated mRNA destabilization8.99E-04
54GO:0010116: positive regulation of abscisic acid biosynthetic process1.28E-03
55GO:0019438: aromatic compound biosynthetic process1.28E-03
56GO:0048194: Golgi vesicle budding1.28E-03
57GO:0006020: inositol metabolic process1.28E-03
58GO:0006612: protein targeting to membrane1.28E-03
59GO:0009617: response to bacterium1.28E-03
60GO:0071786: endoplasmic reticulum tubular network organization1.28E-03
61GO:0006542: glutamine biosynthetic process1.71E-03
62GO:0070534: protein K63-linked ubiquitination1.71E-03
63GO:1902584: positive regulation of response to water deprivation1.71E-03
64GO:0006536: glutamate metabolic process1.71E-03
65GO:0010363: regulation of plant-type hypersensitive response1.71E-03
66GO:0042273: ribosomal large subunit biogenesis1.71E-03
67GO:0010600: regulation of auxin biosynthetic process1.71E-03
68GO:0007029: endoplasmic reticulum organization2.19E-03
69GO:0030308: negative regulation of cell growth2.19E-03
70GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA2.19E-03
71GO:0009851: auxin biosynthetic process2.51E-03
72GO:0019252: starch biosynthetic process2.51E-03
73GO:0006635: fatty acid beta-oxidation2.68E-03
74GO:0006301: postreplication repair2.70E-03
75GO:0048827: phyllome development2.70E-03
76GO:0016070: RNA metabolic process2.70E-03
77GO:0048232: male gamete generation2.70E-03
78GO:0043248: proteasome assembly2.70E-03
79GO:0070814: hydrogen sulfide biosynthetic process2.70E-03
80GO:1902456: regulation of stomatal opening2.70E-03
81GO:0010337: regulation of salicylic acid metabolic process2.70E-03
82GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.70E-03
83GO:0006561: proline biosynthetic process2.70E-03
84GO:0010200: response to chitin2.77E-03
85GO:0009630: gravitropism2.86E-03
86GO:0010583: response to cyclopentenone2.86E-03
87GO:0048280: vesicle fusion with Golgi apparatus3.24E-03
88GO:0045454: cell redox homeostasis3.46E-03
89GO:0051607: defense response to virus3.65E-03
90GO:0006955: immune response3.82E-03
91GO:1900056: negative regulation of leaf senescence3.82E-03
92GO:0070370: cellular heat acclimation3.82E-03
93GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.82E-03
94GO:1902074: response to salt3.82E-03
95GO:0001666: response to hypoxia3.87E-03
96GO:0009061: anaerobic respiration4.44E-03
97GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.44E-03
98GO:0006605: protein targeting4.44E-03
99GO:0010078: maintenance of root meristem identity4.44E-03
100GO:1900150: regulation of defense response to fungus4.44E-03
101GO:2000070: regulation of response to water deprivation4.44E-03
102GO:0006950: response to stress4.55E-03
103GO:0008219: cell death5.04E-03
104GO:0009808: lignin metabolic process5.08E-03
105GO:0010120: camalexin biosynthetic process5.08E-03
106GO:0030968: endoplasmic reticulum unfolded protein response5.08E-03
107GO:0007338: single fertilization5.75E-03
108GO:0090333: regulation of stomatal closure5.75E-03
109GO:0006099: tricarboxylic acid cycle6.68E-03
110GO:0007064: mitotic sister chromatid cohesion7.20E-03
111GO:0006896: Golgi to vacuole transport7.20E-03
112GO:0006535: cysteine biosynthetic process from serine7.20E-03
113GO:0000103: sulfate assimilation7.20E-03
114GO:0055114: oxidation-reduction process7.78E-03
115GO:0030148: sphingolipid biosynthetic process7.96E-03
116GO:0006378: mRNA polyadenylation7.96E-03
117GO:0010015: root morphogenesis7.96E-03
118GO:0052544: defense response by callose deposition in cell wall7.96E-03
119GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.75E-03
120GO:0071365: cellular response to auxin stimulus8.75E-03
121GO:0009718: anthocyanin-containing compound biosynthetic process9.57E-03
122GO:0006970: response to osmotic stress1.02E-02
123GO:0042742: defense response to bacterium1.03E-02
124GO:0042538: hyperosmotic salinity response1.04E-02
125GO:0034605: cellular response to heat1.04E-02
126GO:0006541: glutamine metabolic process1.04E-02
127GO:0009933: meristem structural organization1.04E-02
128GO:0009738: abscisic acid-activated signaling pathway1.08E-02
129GO:0006813: potassium ion transport1.11E-02
130GO:0010053: root epidermal cell differentiation1.13E-02
131GO:0007031: peroxisome organization1.13E-02
132GO:0042343: indole glucosinolate metabolic process1.13E-02
133GO:0010167: response to nitrate1.13E-02
134GO:0010039: response to iron ion1.13E-02
135GO:0005985: sucrose metabolic process1.13E-02
136GO:0090351: seedling development1.13E-02
137GO:0080167: response to karrikin1.22E-02
138GO:0035556: intracellular signal transduction1.24E-02
139GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.27E-02
140GO:0016192: vesicle-mediated transport1.30E-02
141GO:0005992: trehalose biosynthetic process1.31E-02
142GO:0019344: cysteine biosynthetic process1.31E-02
143GO:0080147: root hair cell development1.31E-02
144GO:0009863: salicylic acid mediated signaling pathway1.31E-02
145GO:2000377: regulation of reactive oxygen species metabolic process1.31E-02
146GO:0048367: shoot system development1.36E-02
147GO:0009626: plant-type hypersensitive response1.40E-02
148GO:0031408: oxylipin biosynthetic process1.50E-02
149GO:0048278: vesicle docking1.50E-02
150GO:0071456: cellular response to hypoxia1.60E-02
151GO:0030433: ubiquitin-dependent ERAD pathway1.60E-02
152GO:0035428: hexose transmembrane transport1.60E-02
153GO:0007005: mitochondrion organization1.60E-02
154GO:0018105: peptidyl-serine phosphorylation1.64E-02
155GO:0010227: floral organ abscission1.71E-02
156GO:0006012: galactose metabolic process1.71E-02
157GO:0071215: cellular response to abscisic acid stimulus1.71E-02
158GO:0042147: retrograde transport, endosome to Golgi1.92E-02
159GO:0015991: ATP hydrolysis coupled proton transport2.02E-02
160GO:0048364: root development2.10E-02
161GO:0046323: glucose import2.14E-02
162GO:0006885: regulation of pH2.14E-02
163GO:0045489: pectin biosynthetic process2.14E-02
164GO:0010154: fruit development2.14E-02
165GO:0006662: glycerol ether metabolic process2.14E-02
166GO:0061025: membrane fusion2.25E-02
167GO:0048544: recognition of pollen2.25E-02
168GO:0006623: protein targeting to vacuole2.36E-02
169GO:0010183: pollen tube guidance2.36E-02
170GO:0009749: response to glucose2.36E-02
171GO:0000302: response to reactive oxygen species2.48E-02
172GO:0002229: defense response to oomycetes2.48E-02
173GO:0006891: intra-Golgi vesicle-mediated transport2.48E-02
174GO:0007264: small GTPase mediated signal transduction2.60E-02
175GO:0009567: double fertilization forming a zygote and endosperm2.85E-02
176GO:0006914: autophagy2.85E-02
177GO:0071805: potassium ion transmembrane transport2.97E-02
178GO:0009734: auxin-activated signaling pathway3.06E-02
179GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.08E-02
180GO:0009651: response to salt stress3.17E-02
181GO:0010468: regulation of gene expression3.28E-02
182GO:0006979: response to oxidative stress3.29E-02
183GO:0010029: regulation of seed germination3.36E-02
184GO:0009816: defense response to bacterium, incompatible interaction3.36E-02
185GO:0006952: defense response3.48E-02
186GO:0042128: nitrate assimilation3.49E-02
187GO:0006906: vesicle fusion3.49E-02
188GO:0006888: ER to Golgi vesicle-mediated transport3.62E-02
189GO:0009733: response to auxin3.85E-02
190GO:0009813: flavonoid biosynthetic process4.04E-02
191GO:0006499: N-terminal protein myristoylation4.18E-02
192GO:0009407: toxin catabolic process4.18E-02
193GO:0010119: regulation of stomatal movement4.32E-02
194GO:0009631: cold acclimation4.32E-02
195GO:0009867: jasmonic acid mediated signaling pathway4.61E-02
196GO:0045087: innate immune response4.61E-02
197GO:0016051: carbohydrate biosynthetic process4.61E-02
198GO:0034599: cellular response to oxidative stress4.76E-02
RankGO TermAdjusted P value
1GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
2GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
3GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives0.00E+00
4GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
5GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
6GO:0016301: kinase activity1.64E-05
7GO:0004834: tryptophan synthase activity4.33E-05
8GO:0004356: glutamate-ammonia ligase activity6.89E-05
9GO:0005496: steroid binding6.89E-05
10GO:0004747: ribokinase activity1.39E-04
11GO:0004674: protein serine/threonine kinase activity2.13E-04
12GO:0008865: fructokinase activity2.32E-04
13GO:0004425: indole-3-glycerol-phosphate synthase activity2.51E-04
14GO:0033984: indole-3-glycerol-phosphate lyase activity2.51E-04
15GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.51E-04
16GO:0003867: 4-aminobutyrate transaminase activity2.51E-04
17GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.51E-04
18GO:0008142: oxysterol binding2.86E-04
19GO:0004750: ribulose-phosphate 3-epimerase activity5.53E-04
20GO:0045140: inositol phosphoceramide synthase activity5.53E-04
21GO:0032934: sterol binding5.53E-04
22GO:0004061: arylformamidase activity5.53E-04
23GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding5.53E-04
24GO:0016595: glutamate binding8.99E-04
25GO:0004049: anthranilate synthase activity8.99E-04
26GO:0005093: Rab GDP-dissociation inhibitor activity8.99E-04
27GO:0008430: selenium binding8.99E-04
28GO:0005047: signal recognition particle binding8.99E-04
29GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.99E-04
30GO:0050833: pyruvate transmembrane transporter activity8.99E-04
31GO:0004383: guanylate cyclase activity8.99E-04
32GO:0004781: sulfate adenylyltransferase (ATP) activity8.99E-04
33GO:0016805: dipeptidase activity8.99E-04
34GO:0005524: ATP binding1.20E-03
35GO:0004300: enoyl-CoA hydratase activity1.28E-03
36GO:0004108: citrate (Si)-synthase activity1.28E-03
37GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.28E-03
38GO:0016656: monodehydroascorbate reductase (NADH) activity1.28E-03
39GO:0000339: RNA cap binding1.28E-03
40GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.71E-03
41GO:0043015: gamma-tubulin binding1.71E-03
42GO:0045431: flavonol synthase activity2.19E-03
43GO:0035252: UDP-xylosyltransferase activity2.70E-03
44GO:0036402: proteasome-activating ATPase activity2.70E-03
45GO:0015035: protein disulfide oxidoreductase activity2.75E-03
46GO:0004124: cysteine synthase activity3.24E-03
47GO:0051920: peroxiredoxin activity3.24E-03
48GO:0004602: glutathione peroxidase activity3.24E-03
49GO:0004012: phospholipid-translocating ATPase activity3.24E-03
50GO:0004656: procollagen-proline 4-dioxygenase activity3.24E-03
51GO:0008235: metalloexopeptidase activity3.82E-03
52GO:0102425: myricetin 3-O-glucosyltransferase activity3.82E-03
53GO:0102360: daphnetin 3-O-glucosyltransferase activity3.82E-03
54GO:0043295: glutathione binding3.82E-03
55GO:0004620: phospholipase activity3.82E-03
56GO:0009931: calcium-dependent protein serine/threonine kinase activity4.32E-03
57GO:0016209: antioxidant activity4.44E-03
58GO:0047893: flavonol 3-O-glucosyltransferase activity4.44E-03
59GO:0004034: aldose 1-epimerase activity4.44E-03
60GO:0004683: calmodulin-dependent protein kinase activity4.55E-03
61GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.75E-03
62GO:0071949: FAD binding5.75E-03
63GO:0030955: potassium ion binding6.46E-03
64GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.46E-03
65GO:0004743: pyruvate kinase activity6.46E-03
66GO:0000149: SNARE binding6.98E-03
67GO:0008171: O-methyltransferase activity7.20E-03
68GO:0004713: protein tyrosine kinase activity7.20E-03
69GO:0004364: glutathione transferase activity7.91E-03
70GO:0004177: aminopeptidase activity7.96E-03
71GO:0047372: acylglycerol lipase activity7.96E-03
72GO:0008794: arsenate reductase (glutaredoxin) activity7.96E-03
73GO:0005484: SNAP receptor activity8.24E-03
74GO:0004521: endoribonuclease activity8.75E-03
75GO:0005509: calcium ion binding8.93E-03
76GO:0005262: calcium channel activity9.57E-03
77GO:0004022: alcohol dehydrogenase (NAD) activity9.57E-03
78GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.57E-03
79GO:0004175: endopeptidase activity1.04E-02
80GO:0017025: TBP-class protein binding1.13E-02
81GO:0061630: ubiquitin protein ligase activity1.30E-02
82GO:0031418: L-ascorbic acid binding1.31E-02
83GO:0043130: ubiquitin binding1.31E-02
84GO:0043424: protein histidine kinase binding1.41E-02
85GO:0015079: potassium ion transmembrane transporter activity1.41E-02
86GO:0005515: protein binding1.45E-02
87GO:0035251: UDP-glucosyltransferase activity1.50E-02
88GO:0030246: carbohydrate binding1.78E-02
89GO:0003727: single-stranded RNA binding1.81E-02
90GO:0047134: protein-disulfide reductase activity1.92E-02
91GO:0005507: copper ion binding1.94E-02
92GO:0004672: protein kinase activity1.99E-02
93GO:0003924: GTPase activity1.99E-02
94GO:0005451: monovalent cation:proton antiporter activity2.02E-02
95GO:0005516: calmodulin binding2.10E-02
96GO:0030170: pyridoxal phosphate binding2.21E-02
97GO:0004791: thioredoxin-disulfide reductase activity2.25E-02
98GO:0016853: isomerase activity2.25E-02
99GO:0005355: glucose transmembrane transporter activity2.25E-02
100GO:0015299: solute:proton antiporter activity2.25E-02
101GO:0010181: FMN binding2.25E-02
102GO:0004872: receptor activity2.36E-02
103GO:0015144: carbohydrate transmembrane transporter activity2.38E-02
104GO:0005351: sugar:proton symporter activity2.69E-02
105GO:0015385: sodium:proton antiporter activity2.72E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.72E-02
107GO:0008017: microtubule binding2.88E-02
108GO:0043565: sequence-specific DNA binding2.96E-02
109GO:0042802: identical protein binding3.49E-02
110GO:0030247: polysaccharide binding3.62E-02
111GO:0008236: serine-type peptidase activity3.76E-02
112GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.76E-02
113GO:0005096: GTPase activator activity4.04E-02
114GO:0000287: magnesium ion binding4.16E-02
115GO:0004222: metalloendopeptidase activity4.18E-02
116GO:0030145: manganese ion binding4.32E-02
117GO:0050897: cobalt ion binding4.32E-02
118GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.61E-02
119GO:0016491: oxidoreductase activity4.83E-02
120GO:0004712: protein serine/threonine/tyrosine kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0016021: integral component of membrane2.03E-05
3GO:0005886: plasma membrane3.21E-05
4GO:0005783: endoplasmic reticulum7.94E-05
5GO:0045252: oxoglutarate dehydrogenase complex2.51E-04
6GO:0005773: vacuole2.78E-04
7GO:0005778: peroxisomal membrane3.86E-04
8GO:0005950: anthranilate synthase complex5.53E-04
9GO:0042406: extrinsic component of endoplasmic reticulum membrane8.99E-04
10GO:0030176: integral component of endoplasmic reticulum membrane9.03E-04
11GO:0005849: mRNA cleavage factor complex1.28E-03
12GO:0071782: endoplasmic reticulum tubular network1.28E-03
13GO:0005737: cytoplasm1.55E-03
14GO:0031372: UBC13-MMS2 complex1.71E-03
15GO:0033179: proton-transporting V-type ATPase, V0 domain1.71E-03
16GO:0005789: endoplasmic reticulum membrane2.26E-03
17GO:0030140: trans-Golgi network transport vesicle2.70E-03
18GO:0031597: cytosolic proteasome complex3.24E-03
19GO:0005829: cytosol3.25E-03
20GO:0031595: nuclear proteasome complex3.82E-03
21GO:0030687: preribosome, large subunit precursor3.82E-03
22GO:0005777: peroxisome3.82E-03
23GO:0012507: ER to Golgi transport vesicle membrane4.44E-03
24GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.44E-03
25GO:0034399: nuclear periphery4.44E-03
26GO:0031305: integral component of mitochondrial inner membrane4.44E-03
27GO:0005779: integral component of peroxisomal membrane5.08E-03
28GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.08E-03
29GO:0005794: Golgi apparatus5.74E-03
30GO:0000325: plant-type vacuole5.83E-03
31GO:0008540: proteasome regulatory particle, base subcomplex6.46E-03
32GO:0031201: SNARE complex7.59E-03
33GO:0000502: proteasome complex1.11E-02
34GO:0016020: membrane1.47E-02
35GO:0005741: mitochondrial outer membrane1.50E-02
36GO:0005770: late endosome2.14E-02
37GO:0009570: chloroplast stroma2.15E-02
38GO:0005802: trans-Golgi network2.31E-02
39GO:0000932: P-body3.23E-02
40GO:0005774: vacuolar membrane3.36E-02
Gene type



Gene DE type