Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0048358: mucilage pectin biosynthetic process3.73E-06
2GO:0010393: galacturonan metabolic process3.73E-06
3GO:0071217: cellular response to external biotic stimulus1.03E-05
4GO:0046740: transport of virus in host, cell to cell1.03E-05
5GO:0046898: response to cycloheximide1.03E-05
6GO:0010272: response to silver ion1.93E-05
7GO:0010071: root meristem specification3.02E-05
8GO:0080001: mucilage extrusion from seed coat3.02E-05
9GO:1902183: regulation of shoot apical meristem development5.67E-05
10GO:0048359: mucilage metabolic process involved in seed coat development5.67E-05
11GO:0047484: regulation of response to osmotic stress7.20E-05
12GO:1901001: negative regulation of response to salt stress8.84E-05
13GO:1902074: response to salt1.06E-04
14GO:0045995: regulation of embryonic development1.06E-04
15GO:0019375: galactolipid biosynthetic process1.24E-04
16GO:0010078: maintenance of root meristem identity1.24E-04
17GO:0010492: maintenance of shoot apical meristem identity1.24E-04
18GO:0016559: peroxisome fission1.24E-04
19GO:0006367: transcription initiation from RNA polymerase II promoter1.44E-04
20GO:0009827: plant-type cell wall modification1.44E-04
21GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.63E-04
22GO:2000024: regulation of leaf development1.63E-04
23GO:0010192: mucilage biosynthetic process2.05E-04
24GO:0000266: mitochondrial fission2.49E-04
25GO:0007031: peroxisome organization3.19E-04
26GO:0009944: polarity specification of adaxial/abaxial axis3.67E-04
27GO:0010073: meristem maintenance3.93E-04
28GO:0080022: primary root development5.49E-04
29GO:0010501: RNA secondary structure unwinding5.49E-04
30GO:0008654: phospholipid biosynthetic process6.32E-04
31GO:0009791: post-embryonic development6.32E-04
32GO:0001666: response to hypoxia8.38E-04
33GO:0006974: cellular response to DNA damage stimulus8.99E-04
34GO:0031347: regulation of defense response1.54E-03
35GO:0006364: rRNA processing1.65E-03
36GO:0009909: regulation of flower development1.77E-03
37GO:0009620: response to fungus1.97E-03
38GO:0009624: response to nematode2.09E-03
39GO:0009790: embryo development2.70E-03
40GO:0016036: cellular response to phosphate starvation2.88E-03
41GO:0009793: embryo development ending in seed dormancy2.94E-03
42GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.26E-03
43GO:0009617: response to bacterium3.41E-03
44GO:0010468: regulation of gene expression3.41E-03
45GO:0007049: cell cycle4.38E-03
46GO:0045892: negative regulation of transcription, DNA-templated5.38E-03
47GO:0006629: lipid metabolic process6.15E-03
48GO:0009908: flower development8.55E-03
49GO:0009611: response to wounding9.31E-03
50GO:0051301: cell division9.74E-03
51GO:0045893: positive regulation of transcription, DNA-templated1.01E-02
52GO:0006511: ubiquitin-dependent protein catabolic process1.14E-02
53GO:0009414: response to water deprivation1.48E-02
54GO:0006979: response to oxidative stress1.52E-02
55GO:0030154: cell differentiation1.60E-02
56GO:0009733: response to auxin1.64E-02
57GO:0015031: protein transport1.79E-02
58GO:0007275: multicellular organism development2.45E-02
59GO:0006355: regulation of transcription, DNA-templated2.75E-02
RankGO TermAdjusted P value
1GO:0008195: phosphatidate phosphatase activity8.84E-05
2GO:0003924: GTPase activity3.83E-04
3GO:0003713: transcription coactivator activity5.76E-04
4GO:0004004: ATP-dependent RNA helicase activity9.29E-04
5GO:0004222: metalloendopeptidase activity1.06E-03
6GO:0005525: GTP binding1.07E-03
7GO:0008017: microtubule binding3.12E-03
8GO:0046982: protein heterodimerization activity4.01E-03
9GO:0042803: protein homodimerization activity5.50E-03
10GO:0016887: ATPase activity8.34E-03
11GO:0005515: protein binding9.51E-03
12GO:0003723: RNA binding9.88E-03
13GO:0016787: hydrolase activity2.60E-02
14GO:0003676: nucleic acid binding4.15E-02
RankGO TermAdjusted P value
1GO:0005672: transcription factor TFIIA complex1.93E-05
2GO:0031595: nuclear proteasome complex1.06E-04
3GO:0008541: proteasome regulatory particle, lid subcomplex2.27E-04
4GO:0031902: late endosome membrane1.29E-03
5GO:0000502: proteasome complex1.65E-03
6GO:0005634: nucleus3.17E-03
7GO:0005829: cytosol3.58E-03
8GO:0005777: peroxisome1.01E-02
9GO:0009536: plastid1.75E-02
10GO:0005774: vacuolar membrane3.67E-02
11GO:0048046: apoplast3.80E-02
Gene type



Gene DE type