co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0007172: signal complex assembly	0.00E+00
3	GO:0015995: chlorophyll biosynthetic process	6.06E-09
4	GO:0006782: protoporphyrinogen IX biosynthetic process	4.56E-06
5	GO:0043007: maintenance of rDNA	1.13E-05
6	GO:1901679: nucleotide transmembrane transport	3.00E-05
7	GO:0005977: glycogen metabolic process	5.40E-05
8	GO:0080121: AMP transport	5.40E-05
9	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.23E-05
10	GO:0010021: amylopectin biosynthetic process	1.14E-04
11	GO:0015867: ATP transport	1.14E-04
12	GO:0010438: cellular response to sulfur starvation	1.49E-04
13	GO:0009640: photomorphogenesis	1.50E-04
14	GO:0009759: indole glucosinolate biosynthetic process	1.86E-04
15	GO:0015866: ADP transport	1.86E-04
16	GO:0010315: auxin efflux	1.86E-04
17	GO:1901371: regulation of leaf morphogenesis	1.86E-04
18	GO:0035435: phosphate ion transmembrane transport	1.86E-04
19	GO:0098655: cation transmembrane transport	2.25E-04
20	GO:0010189: vitamin E biosynthetic process	2.25E-04
21	GO:0051510: regulation of unidimensional cell growth	2.66E-04
22	GO:0045893: positive regulation of transcription, DNA-templated	2.79E-04
23	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.08E-04
24	GO:0006783: heme biosynthetic process	3.97E-04
25	GO:0098656: anion transmembrane transport	3.97E-04
26	GO:0006779: porphyrin-containing compound biosynthetic process	4.44E-04
27	GO:0008361: regulation of cell size	5.89E-04
28	GO:0002213: defense response to insect	5.89E-04
29	GO:0009934: regulation of meristem structural organization	6.92E-04
30	GO:0000162: tryptophan biosynthetic process	7.99E-04
31	GO:0051017: actin filament bundle assembly	8.54E-04
32	GO:0015979: photosynthesis	1.07E-03
33	GO:0048443: stamen development	1.14E-03
34	GO:0009958: positive gravitropism	1.33E-03
35	GO:0009741: response to brassinosteroid	1.33E-03
36	GO:0007018: microtubule-based movement	1.39E-03
37	GO:0019252: starch biosynthetic process	1.46E-03
38	GO:0009556: microsporogenesis	1.46E-03
39	GO:0009791: post-embryonic development	1.46E-03
40	GO:0009639: response to red or far red light	1.73E-03
41	GO:0009555: pollen development	2.38E-03
42	GO:0007568: aging	2.56E-03
43	GO:0009637: response to blue light	2.72E-03
44	GO:0006839: mitochondrial transport	2.97E-03
45	GO:0055085: transmembrane transport	3.01E-03
46	GO:0009926: auxin polar transport	3.23E-03
47	GO:0042545: cell wall modification	4.93E-03
48	GO:0009624: response to nematode	5.03E-03
49	GO:0030154: cell differentiation	5.20E-03
50	GO:0009742: brassinosteroid mediated signaling pathway	5.24E-03
51	GO:0045490: pectin catabolic process	7.34E-03
52	GO:0006351: transcription, DNA-templated	8.01E-03
53	GO:0009826: unidimensional cell growth	9.69E-03
54	GO:0048366: leaf development	1.12E-02
55	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.19E-02
56	GO:0006281: DNA repair	1.53E-02
57	GO:0009753: response to jasmonic acid	1.60E-02
58	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.86E-02
59	GO:0009734: auxin-activated signaling pathway	1.95E-02
60	GO:0009908: flower development	2.14E-02
61	GO:0009738: abscisic acid-activated signaling pathway	2.24E-02
62	GO:0006468: protein phosphorylation	3.71E-02
63	GO:0009733: response to auxin	4.12E-02
64	GO:0009409: response to cold	4.71E-02
65	GO:0006810: transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0001158: enhancer sequence-specific DNA binding	0.00E+00
3	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.13E-05
4	GO:0004853: uroporphyrinogen decarboxylase activity	1.13E-05
5	GO:0019156: isoamylase activity	3.00E-05
6	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.23E-05
7	GO:0016851: magnesium chelatase activity	8.23E-05
8	GO:0010328: auxin influx transmembrane transporter activity	1.14E-04
9	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.49E-04
10	GO:0080122: AMP transmembrane transporter activity	1.49E-04
11	GO:0004556: alpha-amylase activity	1.86E-04
12	GO:0005347: ATP transmembrane transporter activity	2.25E-04
13	GO:0015217: ADP transmembrane transporter activity	2.25E-04
14	GO:0008017: microtubule binding	5.29E-04
15	GO:0015114: phosphate ion transmembrane transporter activity	6.40E-04
16	GO:0010329: auxin efflux transmembrane transporter activity	6.40E-04
17	GO:0033612: receptor serine/threonine kinase binding	9.65E-04
18	GO:0051015: actin filament binding	1.66E-03
19	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.80E-03
20	GO:0004721: phosphoprotein phosphatase activity	2.17E-03
21	GO:0043621: protein self-association	3.41E-03
22	GO:0005516: calmodulin binding	3.56E-03
23	GO:0003777: microtubule motor activity	4.24E-03
24	GO:0045330: aspartyl esterase activity	4.24E-03
25	GO:0043565: sequence-specific DNA binding	4.42E-03
26	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.53E-03
27	GO:0005524: ATP binding	4.72E-03
28	GO:0030599: pectinesterase activity	4.83E-03
29	GO:0003779: actin binding	4.93E-03
30	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.65E-03
31	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.67E-03
32	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.32E-02
33	GO:0042803: protein homodimerization activity	1.36E-02
34	GO:0004871: signal transducer activity	1.36E-02
35	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.42E-02
36	GO:0016301: kinase activity	2.00E-02
37	GO:0016887: ATPase activity	2.08E-02
38	GO:0004674: protein serine/threonine kinase activity	2.36E-02
39	GO:0005515: protein binding	2.63E-02
40	GO:0016740: transferase activity	2.64E-02
41	GO:0005509: calcium ion binding	3.58E-02
42	GO:0044212: transcription regulatory region DNA binding	3.80E-02
43	GO:0004842: ubiquitin-protein transferase activity	4.78E-02
44	GO:0004672: protein kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.30E-08
3	GO:0010007: magnesium chelatase complex	5.40E-05
4	GO:0009507: chloroplast	8.27E-05
5	GO:0009574: preprophase band	6.40E-04
6	GO:0009941: chloroplast envelope	6.66E-04
7	GO:0005871: kinesin complex	1.20E-03
8	GO:0009535: chloroplast thylakoid membrane	1.56E-03
9	GO:0000325: plant-type vacuole	2.56E-03
10	GO:0005819: spindle	2.89E-03
11	GO:0009506: plasmodesma	3.16E-03
12	GO:0009706: chloroplast inner membrane	5.03E-03
13	GO:0009505: plant-type cell wall	5.98E-03
14	GO:0009524: phragmoplast	6.09E-03
15	GO:0005874: microtubule	1.13E-02
16	GO:0031969: chloroplast membrane	1.16E-02
17	GO:0005743: mitochondrial inner membrane	1.45E-02
18	GO:0016021: integral component of membrane	2.32E-02
19	GO:0009570: chloroplast stroma	3.15E-02