Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
2GO:0016236: macroautophagy0.00E+00
3GO:0009594: detection of nutrient0.00E+00
4GO:0010111: glyoxysome organization0.00E+00
5GO:0006144: purine nucleobase metabolic process2.53E-05
6GO:1900424: regulation of defense response to bacterium2.53E-05
7GO:0009966: regulation of signal transduction2.53E-05
8GO:0019628: urate catabolic process2.53E-05
9GO:0030242: pexophagy2.53E-05
10GO:0019395: fatty acid oxidation6.44E-05
11GO:0045324: late endosome to vacuole transport2.30E-04
12GO:0070534: protein K63-linked ubiquitination2.30E-04
13GO:0018344: protein geranylgeranylation2.95E-04
14GO:0006656: phosphatidylcholine biosynthetic process2.95E-04
15GO:0003006: developmental process involved in reproduction3.65E-04
16GO:0006301: postreplication repair3.65E-04
17GO:0070814: hydrogen sulfide biosynthetic process3.65E-04
18GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway5.11E-04
19GO:0010050: vegetative phase change5.11E-04
20GO:1900150: regulation of defense response to fungus5.89E-04
21GO:2000031: regulation of salicylic acid mediated signaling pathway6.69E-04
22GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.52E-04
23GO:0000103: sulfate assimilation9.24E-04
24GO:0006633: fatty acid biosynthetic process1.19E-03
25GO:0010039: response to iron ion1.40E-03
26GO:0010053: root epidermal cell differentiation1.40E-03
27GO:0007031: peroxisome organization1.40E-03
28GO:0006071: glycerol metabolic process1.50E-03
29GO:0009695: jasmonic acid biosynthetic process1.72E-03
30GO:0031408: oxylipin biosynthetic process1.83E-03
31GO:0016226: iron-sulfur cluster assembly1.95E-03
32GO:0030433: ubiquitin-dependent ERAD pathway1.95E-03
33GO:0009306: protein secretion2.18E-03
34GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.30E-03
35GO:0080022: primary root development2.42E-03
36GO:0010182: sugar mediated signaling pathway2.55E-03
37GO:0015031: protein transport2.73E-03
38GO:0006623: protein targeting to vacuole2.80E-03
39GO:0006635: fatty acid beta-oxidation2.94E-03
40GO:0002229: defense response to oomycetes2.94E-03
41GO:0007264: small GTPase mediated signal transduction3.07E-03
42GO:0006464: cellular protein modification process3.34E-03
43GO:0006904: vesicle docking involved in exocytosis3.48E-03
44GO:0000910: cytokinesis3.63E-03
45GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.91E-03
46GO:0042128: nitrate assimilation4.06E-03
47GO:0008219: cell death4.52E-03
48GO:0009910: negative regulation of flower development4.99E-03
49GO:0006631: fatty acid metabolic process5.98E-03
50GO:0009738: abscisic acid-activated signaling pathway6.16E-03
51GO:0000209: protein polyubiquitination6.50E-03
52GO:0035556: intracellular signal transduction6.72E-03
53GO:0000165: MAPK cascade7.22E-03
54GO:0009846: pollen germination7.40E-03
55GO:0010224: response to UV-B7.97E-03
56GO:0006417: regulation of translation8.35E-03
57GO:0006511: ubiquitin-dependent protein catabolic process8.65E-03
58GO:0009620: response to fungus9.34E-03
59GO:0000398: mRNA splicing, via spliceosome1.10E-02
60GO:0009058: biosynthetic process1.21E-02
61GO:0010150: leaf senescence1.46E-02
62GO:0006470: protein dephosphorylation1.61E-02
63GO:0009617: response to bacterium1.66E-02
64GO:0007049: cell cycle2.16E-02
65GO:0009723: response to ethylene2.21E-02
66GO:0016192: vesicle-mediated transport2.41E-02
67GO:0046777: protein autophosphorylation2.44E-02
68GO:0006886: intracellular protein transport2.70E-02
69GO:0009873: ethylene-activated signaling pathway3.68E-02
70GO:0009555: pollen development4.62E-02
71GO:0009611: response to wounding4.69E-02
72GO:0051301: cell division4.91E-02
RankGO TermAdjusted P value
1GO:0004846: urate oxidase activity0.00E+00
2GO:0005092: GDP-dissociation inhibitor activity0.00E+00
3GO:0034450: ubiquitin-ubiquitin ligase activity2.53E-05
4GO:0004371: glycerone kinase activity2.53E-05
5GO:0004105: choline-phosphate cytidylyltransferase activity2.53E-05
6GO:0003988: acetyl-CoA C-acyltransferase activity6.44E-05
7GO:0004781: sulfate adenylyltransferase (ATP) activity1.13E-04
8GO:0005093: Rab GDP-dissociation inhibitor activity1.13E-04
9GO:0004180: carboxypeptidase activity1.13E-04
10GO:0017137: Rab GTPase binding2.95E-04
11GO:0004709: MAP kinase kinase kinase activity3.65E-04
12GO:0102391: decanoate--CoA ligase activity4.36E-04
13GO:0004467: long-chain fatty acid-CoA ligase activity5.11E-04
14GO:0004143: diacylglycerol kinase activity5.11E-04
15GO:0003951: NAD+ kinase activity6.69E-04
16GO:0047617: acyl-CoA hydrolase activity8.38E-04
17GO:0019888: protein phosphatase regulator activity1.20E-03
18GO:0005509: calcium ion binding1.82E-03
19GO:0008536: Ran GTPase binding2.55E-03
20GO:0008236: serine-type peptidase activity4.36E-03
21GO:0005096: GTPase activator activity4.67E-03
22GO:0005524: ATP binding4.86E-03
23GO:0003746: translation elongation factor activity5.31E-03
24GO:0004712: protein serine/threonine/tyrosine kinase activity5.64E-03
25GO:0031625: ubiquitin protein ligase binding8.35E-03
26GO:0008565: protein transporter activity1.32E-02
27GO:0004672: protein kinase activity1.90E-02
28GO:0003729: mRNA binding1.93E-02
29GO:0016788: hydrolase activity, acting on ester bonds2.02E-02
30GO:0061630: ubiquitin protein ligase activity2.41E-02
31GO:0004722: protein serine/threonine phosphatase activity2.82E-02
32GO:0003924: GTPase activity3.07E-02
33GO:0016887: ATPase activity4.19E-02
34GO:0000166: nucleotide binding4.62E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0005684: U2-type spliceosomal complex0.00E+00
3GO:0071561: nucleus-vacuole junction0.00E+00
4GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I2.53E-05
5GO:0000152: nuclear ubiquitin ligase complex2.53E-05
6GO:0012510: trans-Golgi network transport vesicle membrane2.53E-05
7GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II2.53E-05
8GO:0005968: Rab-protein geranylgeranyltransferase complex1.69E-04
9GO:0031372: UBC13-MMS2 complex2.30E-04
10GO:0009514: glyoxysome6.69E-04
11GO:0005686: U2 snRNP9.24E-04
12GO:0005777: peroxisome9.96E-04
13GO:0005769: early endosome1.50E-03
14GO:0005770: late endosome2.55E-03
15GO:0019898: extrinsic component of membrane2.80E-03
16GO:0005773: vacuole3.76E-03
17GO:0000151: ubiquitin ligase complex4.52E-03
18GO:0005643: nuclear pore4.52E-03
19GO:0031902: late endosome membrane5.98E-03
20GO:0005829: cytosol6.46E-03
21GO:0005856: cytoskeleton6.85E-03
22GO:0000502: proteasome complex7.78E-03
23GO:0005834: heterotrimeric G-protein complex9.13E-03
24GO:0005802: trans-Golgi network1.02E-02
25GO:0005768: endosome1.16E-02
26GO:0009524: phragmoplast1.21E-02
27GO:0005737: cytoplasm1.31E-02
28GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.13E-02
29GO:0005730: nucleolus2.19E-02
30GO:0005794: Golgi apparatus2.35E-02
31GO:0005774: vacuolar membrane4.47E-02
Gene type



Gene DE type